View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16638_low_27 (Length: 446)

Name: NF16638_low_27
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16638_low_27
NF16638_low_27
[»] chr8 (5 HSPs)
chr8 (179-429)||(556370-556628)
chr8 (14-182)||(556683-556851)
chr8 (14-144)||(22573077-22573207)
chr8 (14-144)||(31734258-31734388)
chr8 (14-67)||(11066502-11066555)
[»] chr1 (11 HSPs)
chr1 (14-141)||(26793702-26793829)
chr1 (14-144)||(19806799-19806931)
chr1 (14-141)||(4076389-4076516)
chr1 (14-127)||(50004939-50005052)
chr1 (14-141)||(4950136-4950263)
chr1 (14-128)||(9383270-9383384)
chr1 (14-67)||(6768281-6768334)
chr1 (21-97)||(28883929-28884005)
chr1 (19-143)||(30209689-30209813)
chr1 (14-61)||(614929-614976)
chr1 (107-144)||(12855371-12855408)
[»] chr4 (6 HSPs)
chr4 (14-107)||(44125983-44126076)
chr4 (15-143)||(19181457-19181585)
chr4 (24-143)||(45413823-45413942)
chr4 (14-79)||(2183302-2183367)
chr4 (14-79)||(36625579-36625644)
chr4 (22-87)||(55945703-55945768)
[»] chr2 (6 HSPs)
chr2 (15-135)||(40626420-40626540)
chr2 (14-141)||(6457543-6457670)
chr2 (23-78)||(7670385-7670440)
chr2 (24-79)||(40054516-40054571)
chr2 (23-84)||(5256379-5256440)
chr2 (14-58)||(6452491-6452535)
[»] chr5 (3 HSPs)
chr5 (15-142)||(32529420-32529549)
chr5 (24-140)||(34731215-34731331)
chr5 (14-65)||(13109730-13109781)
[»] chr6 (2 HSPs)
chr6 (14-135)||(8573831-8573952)
chr6 (14-135)||(8547478-8547599)
[»] chr3 (4 HSPs)
chr3 (25-134)||(40416900-40417009)
chr3 (216-284)||(46713885-46713953)
chr3 (14-56)||(38457767-38457809)
chr3 (14-79)||(51976195-51976260)
[»] chr7 (7 HSPs)
chr7 (14-143)||(2334029-2334161)
chr7 (14-144)||(41482463-41482593)
chr7 (15-142)||(5784255-5784382)
chr7 (14-97)||(24429679-24429762)
chr7 (33-79)||(41147920-41147966)
chr7 (14-131)||(23318981-23319098)
chr7 (14-122)||(39594599-39594707)


Alignment Details
Target: chr8 (Bit Score: 162; Significance: 3e-86; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 179 - 429
Target Start/End: Complemental strand, 556628 - 556370
Alignment:
Q  179 tctatatattgtaatatgtaattgattatgaacttcctatttgcaggttcttccctaataaagcctcaattcttgtcgttgatattcttaatgaactcgt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  556628 tctatatattgtaatatgtaattgattatgaacttcctatttgcaggttcttccctaataaagcctcaattcttgtcgttgatattcttaatgaactcgt 556529  T
Q  279 tgag---------------gtccagattagtcaacctcaatccatgtaatctaaaaatatgatcacttaatttccttgcattgcaatattgttctcttca 363  Q
    ||||               || |||||||||||||||||||||||||||||||||||||||       | ||||||||||||||||||||||||||||||    
T  556528 tgaggtaagctttattgtagttcagattagtcaacctcaatccatgtaatctaaaaatatg-------actttccttgcattgcaatattgttctcttca 556436  T
Q  364 aataatgcacgcctgcataatctctaattcacttacccaagtgaataattatagttttattcatgt 429  Q
    ||||| |||||| |||| |||||||||||||||| |||||||||||||| ||||||||||||||||    
T  556435 aataaagcacgcatgcacaatctctaattcacttgcccaagtgaataatgatagttttattcatgt 556370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 14 - 182
Target Start/End: Complemental strand, 556851 - 556683
Alignment:
Q  14 caaagggtgaataggataggattagaaataagtttaatttatcattttctattgttgcacgaaacagcggattggatcaggatacgattggtttatcata 113  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  556851 caaagggtgaataggatatgattagaaataggtttaatttatcattttctattgttgcacgaaacagcggtttggatcaggatatgattggtttatcata 556752  T
Q  114 tcctatctccttatcatgtgcatcaaacgggaccaatgttatgactgattgctcattgttttatttcta 182  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  556751 tcctatctccttatcatgtgcatcaaacgggcccaatgttatgactgatttctcattgttttatttcta 556683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 22573207 - 22573077
Alignment:
Q  14 caaagggtgaataggataggattagaaataagtttaatttatcattttctattgttgcacgaaacagcggattggatcaggatacgattggtttatcata 113  Q
    |||||| | ||||||||||||||||||| | ||| || ||||||||| || ||| ||||| ||||| |||||||  |||||||| |||    | ||||||    
T  22573207 caaaggttcaataggataggattagaaacaggttaaacttatcatttcctgttggtgcaccaaacaacggattgagtcaggataggatattctaatcata 22573108  T
Q  114 tcctatctccttatcatgtgcatcaaacggg 144  Q
    || | ||||||||||||| ||| ||||||||    
T  22573107 tcatgtctccttatcatgcgcaccaaacggg 22573077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 31734388 - 31734258
Alignment:
Q  14 caaagggtgaataggataggattagaaataagtttaatttatcattttctattgttgcacgaaacagcggattggatcaggatacgattggtttatcata 113  Q
    ||||||||| || ||||| |||| |||||| ||||||||||||||||  ||||| ||||| ||||| ||||||  | ||||||| ||  |   |||||||    
T  31734388 caaagggtggatgggataagattggaaataggtttaatttatcatttcttattggtgcaccaaacaacggattaaagcaggataggaaagtcctatcata 31734289  T
Q  114 tcctatctccttatcatgtgcatcaaacggg 144  Q
    || | ||||  ||||||||||| ||||||||    
T  31734288 tcatgtctctctatcatgtgcaccaaacggg 31734258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 11066555 - 11066502
Alignment:
Q  14 caaagggtgaataggataggattagaaataagtttaatttatcattttctattg 67  Q
    |||||| ||| ||||||||||||||||||| |||||| ||||| ||| ||||||    
T  11066555 caaaggctgagtaggataggattagaaataggtttaagttatcctttcctattg 11066502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 8e-28; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 26793829 - 26793702
Alignment:
Q  14 caaagggtgaataggataggattagaaataagtttaatttatcattttctattgttgcacgaaacagcggattggatcaggatacgattggtttatcata 113  Q
    |||||| ||| |||||||||||||||||||||||||| ||||| |||||||||| ||||| ||||| ||||||| ||||||||| ||| | | |||||||    
T  26793829 caaaggttgattaggataggattagaaataagtttaagttatccttttctattggtgcaccaaacaacggattgaatcaggatatgatagttctatcata 26793730  T
Q  114 tcctatctccttatcatgtgcatcaaac 141  Q
    || | ||| ||||||||||||| |||||    
T  26793729 tcatgtcttcttatcatgtgcaccaaac 26793702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 19806799 - 19806931
Alignment:
Q  14 caaagggtgaataggataggattagaaataagtttaatttatcattttctattgttgc--acgaaacagcggattggatcaggatacgattggtttatca 111  Q
    ||||| |||||||||||||||||||||||| |||||||||||| ||| |||||| |||  || ||||| | ||||| || |||||| ||| |  ||||||    
T  19806799 caaagagtgaataggataggattagaaataggtttaatttatcctttcctattgatgcaaaccaaacaccagattgaataaggataggatagtgttatca 19806898  T
Q  112 tatcctatctccttatcatgtgcatcaaacggg 144  Q
    |||||||||||||||||||||||| ||||||||    
T  19806899 tatcctatctccttatcatgtgcaccaaacggg 19806931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 14 - 141
Target Start/End: Original strand, 4076389 - 4076516
Alignment:
Q  14 caaagggtgaataggataggattagaaataagtttaatttatcattttctattgttgcacgaaacagcggattggatcaggatacgattggtttatcata 113  Q
    ||||| ||||||||||||||||||| |||| |||||||||||| ||| |||||| ||||| ||||| | ||||  || ||| || ||| |  ||||||||    
T  4076389 caaagagtgaataggataggattagtaataggtttaatttatcctttcctattgatgcaccaaacaccagattaaataagggtatgatagtgttatcata 4076488  T
Q  114 tcctatctccttatcatgtgcatcaaac 141  Q
    |||||||||||||||||||||| |||||    
T  4076489 tcctatctccttatcatgtgcaccaaac 4076516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 50004939 - 50005052
Alignment:
Q  14 caaagggtgaataggataggattagaaataagtttaatttatcattttctattgttgcacgaaacagcggattggatcaggatacgattggtttatcata 113  Q
    |||||||||| ||||||||||||||||||| |||||| ||||| |||| ||||| ||||| ||||| |  ||| ||| | |||| ||| | |||||||||    
T  50004939 caaagggtgattaggataggattagaaataggtttaaattatccttttttattggtgcaccaaacatcaaattagattaagatatgatagttttatcata 50005038  T
Q  114 tcctatctccttat 127  Q
    |||||||| |||||    
T  50005039 tcctatcttcttat 50005052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 4950263 - 4950136
Alignment:
Q  14 caaagggtgaataggataggattagaaataagtttaatttatcattttctattgttgcacgaaacagcggattggatcaggatacgattggtttatcata 113  Q
    |||||||| ||||||||| ||||  |||| ||||||| |||||||||||||||| ||||| ||||| |  |||| | || |||| |||  ||||||||||    
T  4950263 caaagggtaaataggatatgattgaaaatgagtttaaattatcattttctattgatgcaccaaacatcaaattgaaacaagataggatatgtttatcata 4950164  T
Q  114 tcctatctccttatcatgtgcatcaaac 141  Q
    || ||| | ||||||||||||| |||||    
T  4950163 tcttattttcttatcatgtgcaccaaac 4950136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 128
Target Start/End: Original strand, 9383270 - 9383384
Alignment:
Q  14 caaagggtgaataggataggattagaaataagtttaatttatcattttctattgttgcacgaaacagcggattggatcaggatacgattggtttatcata 113  Q
    |||||||||| ||||||| ||||||||||  ||||||||||||  || |||||| ||||| |||||  |||||  ||||||||  ||| | |||||||||    
T  9383270 caaagggtgagtaggataagattagaaattggtttaatttatccgttcctattggtgcaccaaacaatggatttaatcaggatgtgatagttttatcata 9383369  T
Q  114 tcctatctccttatc 128  Q
    || | ||||| ||||    
T  9383370 tcttttctccctatc 9383384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 6768334 - 6768281
Alignment:
Q  14 caaagggtgaataggataggattagaaataagtttaatttatcattttctattg 67  Q
    |||||| || |||| |||||||  ||||||||||||||||||||||||||||||    
T  6768334 caaaggttggatagaataggataggaaataagtttaatttatcattttctattg 6768281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 28883929 - 28884005
Alignment:
Q  21 tgaataggataggattagaaataagtttaatttatcattttctattgttgcacgaaacagcggattggatcaggata 97  Q
    |||||| ||||||||||| || |||||||||||||| | | |||||| ||||| |||||| |||||| |||| ||||    
T  28883929 tgaataagataggattaggaaaaagtttaatttatcctatactattggtgcaccaaacagtggattgaatcaagata 28884005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 30209813 - 30209689
Alignment:
Q  19 ggtgaataggataggattagaaataagtttaatttatcattttctattgttgcacgaaacagcggattggatcaggatacgattggtttatcatatccta 118  Q
    ||||||||||||||||| || ||| || ||| ||||||||||||||||| || || ||||| | ||||  |  |||||| |||   ||||||||| |||     
T  30209813 ggtgaataggataggataagtaatgagattattttatcattttctattggtgtaccaaacaacagatttaagtaggatatgataattttatcataccctg 30209714  T
Q  119 tctccttatcatgtgcatcaaacgg 143  Q
     || ||||||||||||| |||||||    
T  30209713 acttcttatcatgtgcaccaaacgg 30209689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 614929 - 614976
Alignment:
Q  14 caaagggtgaataggataggattagaaataagtttaatttatcatttt 61  Q
    |||||||||| ||| ||| |||||||||| ||||||||||||||||||    
T  614929 caaagggtgagtagaataagattagaaattagtttaatttatcatttt 614976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 144
Target Start/End: Original strand, 12855371 - 12855408
Alignment:
Q  107 tatcatatcctatctccttatcatgtgcatcaaacggg 144  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  12855371 tatcatatcctgtctccttatcatgtgcaccaaacggg 12855408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 44126076 - 44125983
Alignment:
Q  14 caaagggtgaataggataggattagaaataagtttaatttatcattttctattgttgcacgaaacagcggattggatcaggatacgattggttt 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||| |||  |||||||||||||| |||||||||    
T  44126076 caaaaggtgaataggataggattagaaataagtttaatttatcatttcctattgctgcaccaaatagcatattggatcaggatatgattggttt 44125983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 19181457 - 19181585
Alignment:
Q  15 aaagggtgaataggataggattagaaataagtttaatttatcattttctattgttgcacgaaacagcggattggatcaggatacgattggtttatcatat 114  Q
    ||||| ||| ||||||||||||||||||| |||||||||||||| |  | ||| ||||| |||||   ||||||||||||||| |||   ||||||||||    
T  19181457 aaaggatgagtaggataggattagaaataggtttaatttatcatatcatgttggtgcaccaaacaatagattggatcaggataggataattttatcatat 19181556  T
Q  115 cctatctccttatcatgtgcatcaaacgg 143  Q
    | | ||||  ||||||||||| |||||||    
T  19181557 catgtctctctatcatgtgcaccaaacgg 19181585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 45413823 - 45413942
Alignment:
Q  24 ataggataggattagaaataagtttaatttatcattttctattgttgcacgaaacagcggattggatcaggatacgattggtttatcatatcctatctcc 123  Q
    ||||||||||||  |||||| |||||||||||| ||| |||||| ||||| ||||| | ||||| |||| |||| ||| | | |||| |||||| |||||    
T  45413823 ataggataggataggaaataggtttaatttatcctttcctattggtgcaccaaacaaccgattgaatcaagatatgatagttctatcctatcctgtctcc 45413922  T
Q  124 ttatcatgtgcatcaaacgg 143  Q
     ||||| ||||| |||||||    
T  45413923 ctatcaagtgcaccaaacgg 45413942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 2183367 - 2183302
Alignment:
Q  14 caaagggtgaataggataggattagaaataagtttaatttatcattttctattgttgcacgaaaca 79  Q
    |||||| || ||||||||||||| ||||| ||||||||||||| |||||||||| ||||| |||||    
T  2183367 caaaggttggataggataggattggaaatgagtttaatttatccttttctattggtgcaccaaaca 2183302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 36625579 - 36625644
Alignment:
Q  14 caaagggtgaataggataggattagaaataagtttaatttatcattttctattgttgcacgaaaca 79  Q
    ||||||||||||||||||||||| | |||| |||||||||||||| | |||||  ||||| |||||    
T  36625579 caaagggtgaataggataggattcgtaataggtttaatttatcatatcctattagtgcaccaaaca 36625644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 55945703 - 55945768
Alignment:
Q  22 gaataggataggattagaaataagtttaatttatcattttctattgttgcacgaaacagcggattg 87  Q
    ||||||||||||||||||||||  ||  ||||||| ||| |||||| ||||| ||||| |||||||    
T  55945703 gaataggataggattagaaatagattggatttatcctttcctattggtgcaccaaacaacggattg 55945768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 40626540 - 40626420
Alignment:
Q  15 aaagggtgaataggataggattagaaataagtttaatttatcattttctattgttgcacgaaacagcggattggatcaggatacgattggtttatcatat 114  Q
    ||||||||| |||||||||||||||||||  ||||| ||||| ||| |||||| ||||| ||||||| ||||| |||| |||| ||| | ||||||||||    
T  40626540 aaagggtgagtaggataggattagaaatatatttaaattatcctttcctattggtgcaccaaacagcagattgaatcaagatatgatagttttatcatat 40626441  T
Q  115 cctatctccttatcatgtgca 135  Q
    ||| ||| | |||||||||||    
T  40626440 cctgtcttcctatcatgtgca 40626420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 6457670 - 6457543
Alignment:
Q  14 caaagggtgaataggataggattagaaataagtttaatttatcattttctattgttgcacgaaacagcggattggatcaggatacgattggtttatcata 113  Q
    ||||||||| ||| |||| |||| |||||   |||||||||||||||||||||| ||||| ||||| | ||||| |||| |||| ||| | | |||||||    
T  6457670 caaagggtggataagatatgattggaaattgatttaatttatcattttctattggtgcaccaaacaacagattgaatcatgatatgatagttctatcata 6457571  T
Q  114 tcctatctccttatcatgtgcatcaaac 141  Q
    |||| ||||  ||||||||||| |||||    
T  6457570 tcctgtctctctatcatgtgcaccaaac 6457543  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 7670440 - 7670385
Alignment:
Q  23 aataggataggattagaaataagtttaatttatcattttctattgttgcacgaaac 78  Q
    ||||||||||||||||||| | ||| || |||||||||||||||| ||||| ||||    
T  7670440 aataggataggattagaaacaggttaaacttatcattttctattggtgcaccaaac 7670385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 40054516 - 40054571
Alignment:
Q  24 ataggataggattagaaataagtttaatttatcattttctattgttgcacgaaaca 79  Q
    ||||||||||||||  |||| ||||| ||||||||||||||||| ||||| |||||    
T  40054516 ataggataggattaacaataggtttagtttatcattttctattggtgcaccaaaca 40054571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 5256440 - 5256379
Alignment:
Q  23 aataggataggattagaaataagtttaatttatcattttctattgttgcacgaaacagcgga 84  Q
    |||||||||||||||  || |||||||||||||||||| |||  | ||||| ||||||||||    
T  5256440 aataggataggattaacaacaagtttaatttatcatttcctaccggtgcaccaaacagcgga 5256379  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 6452535 - 6452491
Alignment:
Q  14 caaagggtgaataggataggattagaaataagtttaatttatcat 58  Q
    ||||| |||||||||||| |||||| |||| ||||||||||||||    
T  6452535 caaagcgtgaataggataagattagtaataggtttaatttatcat 6452491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 142
Target Start/End: Original strand, 32529420 - 32529549
Alignment:
Q  15 aaagggtgaataggataggattagaaataagtttaatttatcattttctattgttgcacgaaacagcggattggatcagg--atacgattggtttatcat 112  Q
    ||||| |||||| |||| |||||||||||||||||||||||  |||| ||||| ||||| ||||||||||||| |  | |  ||| ||| | ||||||||    
T  32529420 aaaggatgaataagatatgattagaaataagtttaatttattcttttttattggtgcaccaaacagcggattgaagtaagatatatgatagttttatcat 32529519  T
Q  113 atcctatctccttatcatgtgcatcaaacg 142  Q
    ||| | ||| ||||||||||||||||||||    
T  32529520 atcttgtcttcttatcatgtgcatcaaacg 32529549  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 34731331 - 34731215
Alignment:
Q  24 ataggataggattagaaataagtttaatttatcattttctattgttgcacgaaacagcggattggatcaggatacgattggtttatcatatcctatctcc 123  Q
    ||||||||||||||  |||| ||||| |||||| ||| |||||| ||||| |||||  |||||  |  |||||| ||| |  |||||||||||||||||     
T  34731331 ataggataggattaacaataggtttagtttatcctttcctattggtgcaccaaacaagggatttaaataggatatgatagtgttatcatatcctatctct 34731232  T
Q  124 ttatcatgtgcatcaaa 140  Q
    |||||||| ||| ||||    
T  34731231 ttatcatgcgcaccaaa 34731215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 13109781 - 13109730
Alignment:
Q  14 caaagggtgaataggataggattagaaataagtttaatttatcattttctat 65  Q
    ||||||||| |||||||| ||||||||||| ||| || ||||||||||||||    
T  13109781 caaagggtggataggatatgattagaaatatgttaaacttatcattttctat 13109730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 8573831 - 8573952
Alignment:
Q  14 caaagggtgaataggataggattagaaataagtttaatttatcattttctattgttgcacgaaacagcggattggatcaggatacgattggtttatcata 113  Q
    ||||||||||||| |||| ||||||||||| |||||| ||||||||| |||||| ||| | |||| | |||||| | |||||||  |||| |||||||||    
T  8573831 caaagggtgaatatgataagattagaaataggtttaagttatcatttcctattgatgctccaaacggaggattgaaacaggatagaattgttttatcata 8573930  T
Q  114 tcctatctccttatcatgtgca 135  Q
    | || | | |||||||||||||    
T  8573931 ttctgttttcttatcatgtgca 8573952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 8547478 - 8547599
Alignment:
Q  14 caaagggtgaataggataggattagaaataagtttaatttatcattttctattgttgcacgaaacagcggattggatcaggatacgattggtttatcata 113  Q
    ||||||||||||| |||| ||||||||||| |||||| ||||| ||| |||||| ||| | |||| |||||||| | || ||||  |||| |||||||||    
T  8547478 caaagggtgaatatgataagattagaaataggtttaagttatcctttcctattgatgctccaaacggcggattgaaacatgatagaattgttttatcata 8547577  T
Q  114 tcctatctccttatcatgtgca 135  Q
    | || | | | |||||||||||    
T  8547578 ttctgttttcctatcatgtgca 8547599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 40417009 - 40416900
Alignment:
Q  25 taggataggattagaaataagtttaatttatcattttctattgttgcacgaaacagcggattggatcaggatacgattggtttatcatatcctatctcct 124  Q
    ||||||||||||| |||||  |||||||||||||||||| ||| ||||| ||||| ||||||| | ||||||| ||| | ||| ||||||||| ||| |     
T  40417009 taggataggattaaaaatatatttaatttatcattttctgttgatgcaccaaacaacggattgaagcaggatatgatagttttttcatatcctgtcttcc 40416910  T
Q  125 tatcatgtgc 134  Q
    ||||||||||    
T  40416909 tatcatgtgc 40416900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 46713885 - 46713953
Alignment:
Q  216 tatttgcaggttcttccctaataaagcctcaattcttgtcgttgatattcttaatgaactcgttgaggt 284  Q
    |||||| |||||||||||| |||||||| |||||| ||  ||||||||||| |||||| | ||||||||    
T  46713885 tatttgtaggttcttccctgataaagccacaattcctgcagttgatattctaaatgaattagttgaggt 46713953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 38457809 - 38457767
Alignment:
Q  14 caaagggtgaataggataggattagaaataagtttaatttatc 56  Q
    |||| |||||||||||||||||||||||| ||||||| |||||    
T  38457809 caaaaggtgaataggataggattagaaatgagtttaaattatc 38457767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 51976260 - 51976195
Alignment:
Q  14 caaagggtgaataggataggattagaaataagtttaatttatcattttctattgttgcacgaaaca 79  Q
    |||| ||||||||||||| |||||||||||   |||  |||||||||||||||| ||||| |||||    
T  51976260 caaatggtgaataggataagattagaaatagccttagcttatcattttctattggtgcaccaaaca 51976195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 143
Target Start/End: Original strand, 2334029 - 2334161
Alignment:
Q  14 caaagggtgaataggataggattagaaataagtttaatttatcattttctattgttgcacgaaacagcggattgga---tcaggatacgattggtttatc 110  Q
    |||| ||||||||||||||||||| ||||| |||||| |||||   | |||||| ||||| ||||| ||||||| |   |||||||| ||| |  |||||    
T  2334029 caaaaggtgaataggataggattaaaaataggtttaagttatccaatcctattggtgcaccaaacaccggattgaatattcaggatatgatagtgttatc 2334128  T
Q  111 atatcctatctccttatcatgtgcatcaaacgg 143  Q
    ||||| | ||||||||||||| |||||||||||    
T  2334129 atatcatgtctccttatcatgcgcatcaaacgg 2334161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 41482463 - 41482593
Alignment:
Q  14 caaagggtgaataggataggattagaaataagtttaatttatcattttctattgttgcacgaaacagcggattggatcaggatacgattggtttatcata 113  Q
    |||||||||| ||||||| ||||| ||||| |||||| ||||| ||| || ||| ||||| |||||||| |||  ||||||| | ||| | |||||| ||    
T  41482463 caaagggtgagtaggatatgattaaaaataggtttaagttatcctttcctgttggtgcaccaaacagcgcattaaatcaggagatgatagttttatccta 41482562  T
Q  114 tcctatctccttatcatgtgcatcaaacggg 144  Q
    || | ||| | ||||||||||| ||||||||    
T  41482563 tcatgtcttcctatcatgtgcaccaaacggg 41482593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 142
Target Start/End: Complemental strand, 5784382 - 5784255
Alignment:
Q  15 aaagggtgaataggataggattagaaataagtttaatttatcattttctattgttgcacgaaacagcggattggatcaggatacgattggtttatcatat 114  Q
    ||||| |||||| |||| |||||||||||||||||| ||||| |||| ||||| ||||| |||   | |||||||||| ||||  ||   || |||||||    
T  5784382 aaaggatgaatatgatacgattagaaataagtttaacttatccttttttattgatgcaccaaattactgattggatcaagatataataatttcatcatat 5784283  T
Q  115 cctatctccttatcatgtgcatcaaacg 142  Q
     ||||||| |||||||||| | ||||||    
T  5784282 gctatctctttatcatgtgtaccaaacg 5784255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 24429762 - 24429679
Alignment:
Q  14 caaagggtgaataggataggattagaaataagtttaatttatcattttctattgttgcacgaaacagcggattggatcaggata 97  Q
    |||||||||| || |||||||||| |||||  ||||| |||||||||||||||| ||||  || |||| || || |||||||||    
T  24429762 caaagggtgagtaagataggattataaatagttttaaattatcattttctattggtgcatcaagcagcagaatgaatcaggata 24429679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 41147920 - 41147966
Alignment:
Q  33 gattagaaataagtttaatttatcattttctattgttgcacgaaaca 79  Q
    ||||| |||||||||||||||||| |||||||||| ||||| |||||    
T  41147920 gattataaataagtttaatttatccttttctattgatgcaccaaaca 41147966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 23318981 - 23319098
Alignment:
Q  14 caaagggtgaataggataggattagaaataagtttaatttatcattttctattgttgcacgaaacagcggattggatcaggatacgattggtttatcata 113  Q
    |||||| | ||||||||||||||| ||||| |||||| ||||| |||  | ||| || || ||||| | ||||  ||||||||| ||| |  ||||||||    
T  23318981 caaaggctcaataggataggattaaaaataggtttaaattatcctttcatgttggtggaccaaacaacagatttaatcaggatatgatagtgttatcata 23319080  T
Q  114 tcctatctccttatcatg 131  Q
    |||| ||| |||||||||    
T  23319081 tcctgtcttcttatcatg 23319098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 39594707 - 39594599
Alignment:
Q  14 caaagggtgaataggataggattagaaataagtttaatttatcattttctattgttgcacgaaacagcggattggatcaggatacgattggtttatcata 113  Q
    |||||| |||||| |||| |||||| |||| |||||||||| ||| |  ||||| ||||| ||||| ||||||  |  |||||| ||| | |||||||||    
T  39594707 caaaggatgaatatgataagattagtaataggtttaatttagcatatcttattggtgcaccaaacaacggatttaagtaggatatgatagttttatcata 39594608  T
Q  114 tcctatctc 122  Q
    |||| ||||    
T  39594607 tcctctctc 39594599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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