View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16638_low_29 (Length: 439)

Name: NF16638_low_29
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16638_low_29
NF16638_low_29
[»] chr5 (5 HSPs)
chr5 (97-428)||(19601906-19602235)
chr5 (3-81)||(19602337-19602415)
chr5 (221-310)||(43100959-43101043)
chr5 (225-307)||(9622399-9622477)
chr5 (216-261)||(23418901-23418946)
[»] chr4 (5 HSPs)
chr4 (216-309)||(16529826-16529915)
chr4 (216-307)||(12832436-12832523)
chr4 (221-307)||(38476282-38476364)
chr4 (216-309)||(56192210-56192299)
chr4 (216-264)||(3534047-3534095)
[»] chr7 (4 HSPs)
chr7 (216-271)||(965262-965317)
chr7 (224-271)||(35015911-35015958)
chr7 (221-296)||(16706687-16706757)
chr7 (221-296)||(17680923-17680993)
[»] chr6 (4 HSPs)
chr6 (216-271)||(15489406-15489461)
chr6 (216-309)||(32183771-32183860)
chr6 (220-310)||(20969780-20969866)
chr6 (216-271)||(15135052-15135108)
[»] chr1 (5 HSPs)
chr1 (216-310)||(8259482-8259572)
chr1 (216-309)||(15342871-15342959)
chr1 (216-307)||(14624967-14625054)
chr1 (220-277)||(42693518-42693575)
chr1 (216-305)||(48379474-48379558)
[»] chr2 (2 HSPs)
chr2 (248-316)||(9032748-9032812)
chr2 (216-271)||(19494762-19494817)
[»] scaffold1940 (1 HSPs)
scaffold1940 (216-266)||(584-634)
[»] scaffold0001 (1 HSPs)
scaffold0001 (216-307)||(428283-428369)


Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 97 - 428
Target Start/End: Complemental strand, 19602235 - 19601906
Alignment:
Q  97 acttgacctcatgtcgtacaatgtgaatcatctatatatatatgatctcttaactgcccttagcatatctcgtcggatatctcggagttagttattccaa 196  Q
    |||||||||||||||||||||||| ||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19602235 acttgacctcatgtcgtacaatgtaaatcatccatatatat--gatctcttaactgcccttagcatatctcgtcggatatctcggagttagttatgccaa 19602138  T
Q  197 ggacagttaagagatcataatagacacccatatattatactccgcattgagggtgcctatttaatgtggttctaattaaataggtgacgcacccaccatt 296  Q
    || |||||||||||||||||||||||| ||||||||||||||   |  ||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  19602137 gggcagttaagagatcataatagacactcatatattatactctataaggagggtgtctatttaatgtggtcctaattaaataggtgacgcacccaccatt 19602038  T
Q  297 ttagatggtctaattgttgctatgcgctacaccctagatacaatcatattttcaccatttttcacacattttccttctacatttccctaatcgacttgag 396  Q
     |||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||    
T  19602037 gtagatggtctaagtgttgttatgcgccacaccctagatacgatcatattttcaccatttttcacacactttccttcaacatttctctaatcgacttgag 19601938  T
Q  397 tgtcagagtgctaatctgttttgtaggttcat 428  Q
    |||||||||||||| |||| ||||||||||||    
T  19601937 tgtcagagtgctaacctgtgttgtaggttcat 19601906  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 19602415 - 19602337
Alignment:
Q  3 ttccattggaggcggggtatacgttacaaaggacatatgaaaagcagaatgaatgcatctttggtatcaatacggtttt 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19602415 ttccattggaggcggggtatacgttacaaaggacatatgaaaagcagaatgaatgcatctttggtatcaatactgtttt 19602337  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 310
Target Start/End: Original strand, 43100959 - 43101043
Alignment:
Q  221 cacccatatattatactccgcattgagggtgcctatttaatgtggttctaattaaataggtgacgcacccaccattttagatggtctaat 310  Q
    ||||||||| ||||||||| || ||||||||| ||||||||||||| |    ||||||||| | |||||||||| ||| |||||||||||    
T  43100959 cacccatatgttatactccacaatgagggtgcttatttaatgtggtgc----taaataggttaagcacccacca-tttggatggtctaat 43101043  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 307
Target Start/End: Original strand, 9622399 - 9622477
Alignment:
Q  225 catatattatactccgcattgagggtgcctatttaatgtggttctaattaaataggtgacgcacccaccattttagatggtct 307  Q
    ||||| ||||||||| || || ||||| |||||||||||||| |    ||||||||||| |||||||||||| | ||||||||    
T  9622399 catatgttatactccacaatgggggtgtctatttaatgtggtgc----taaataggtgaagcacccaccattgtggatggtct 9622477  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 261
Target Start/End: Complemental strand, 23418946 - 23418901
Alignment:
Q  216 atagacacccatatattatactccgcattgagggtgcctatttaat 261  Q
    |||| ||||||||||||||||||| || || |||||||||||||||    
T  23418946 atagccacccatatattatactccacaatgggggtgcctatttaat 23418901  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 216 - 309
Target Start/End: Complemental strand, 16529915 - 16529826
Alignment:
Q  216 atagacacccatatattatactccgcattgagggtgcctatttaatgtggttctaattaaataggtgacgcacccaccattttagatggtctaa 309  Q
    |||| ||||||| ||||||||||| || || |||||||||||||||||||| |    ||||||||||| |||||||||||| | ||||||||||    
T  16529915 atagccacccatgtattatactccacaatgggggtgcctatttaatgtggtgc----taaataggtgaagcacccaccattgtggatggtctaa 16529826  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 307
Target Start/End: Original strand, 12832436 - 12832523
Alignment:
Q  216 atagacacccatatattatactccgcattgagggtgcctatttaatgtggttctaattaaataggtgacgcacccaccattttagatggtct 307  Q
    |||| ||||||| ||||||||||| || |  ||||||| |||||||||||| ||||    |||||||| |||||||||||| ||||||||||    
T  12832436 atagccacccatgtattatactccacaataggggtgccgatttaatgtggtgctaa----ataggtgaagcacccaccattgtagatggtct 12832523  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 307
Target Start/End: Original strand, 38476282 - 38476364
Alignment:
Q  221 cacccatatattatactccgcattgagggtgcctatttaatgtggttctaattaaataggtgacgcacccaccattttagatggtct 307  Q
    ||||||||||||||||| |  | || ||||| |||||||||||||| ||||    |||||||| |||||||||||| ||||||||||    
T  38476282 cacccatatattatacttcataatgggggtgtctatttaatgtggtgctaa----ataggtgaagcacccaccattatagatggtct 38476364  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 309
Target Start/End: Complemental strand, 56192299 - 56192210
Alignment:
Q  216 atagacacccatatattatactccgcattgagggtgcctatttaatgtggttctaattaaataggtgacgcacccaccattttagatggtctaa 309  Q
    ||||||||||||||||| |||||| ||  | ||||||||||||||||||||     |||||||||| | |||||||||||| | |||| |||||    
T  56192299 atagacacccatatattttactccacaacgggggtgcctatttaatgtggt----gttaaataggtaaagcacccaccattgtggatgatctaa 56192210  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 3534047 - 3534095
Alignment:
Q  216 atagacacccatatattatactccgcattgagggtgcctatttaatgtg 264  Q
    |||| |||||||||||||| |||| || || ||||||||||||||||||    
T  3534047 atagccacccatatattattctccacaatgggggtgcctatttaatgtg 3534095  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 965317 - 965262
Alignment:
Q  216 atagacacccatatattatactccgcattgagggtgcctatttaatgtggttctaa 271  Q
    ||||||||||||||||| |||||| || || |||||||||||||||||||| ||||    
T  965317 atagacacccatatattttactccacaatgggggtgcctatttaatgtggtgctaa 965262  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 35015911 - 35015958
Alignment:
Q  224 ccatatattatactccgcattgagggtgcctatttaatgtggttctaa 271  Q
    |||||||||||||||| || |||||||||||||||||| |||| ||||    
T  35015911 ccatatattatactccacaatgagggtgcctatttaatatggtgctaa 35015958  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 296
Target Start/End: Original strand, 16706687 - 16706757
Alignment:
Q  221 cacccatatattatactccgcattgagggtgcctatttaatgtggttctaattaaataggtgacgcacccaccatt 296  Q
    ||||||||| ||||||||| || || |||||||||||||||||||| |    ||||||||||| ||||||||||||    
T  16706687 cacccatatgttatactccacaatg-gggtgcctatttaatgtggtgc----taaataggtgaagcacccaccatt 16706757  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 296
Target Start/End: Original strand, 17680923 - 17680993
Alignment:
Q  221 cacccatatattatactccgcattgagggtgcctatttaatgtggttctaattaaataggtgacgcacccaccatt 296  Q
    ||||||||| ||||||||| || || |||||||||||||||||||| |    ||||||||||| ||||||||||||    
T  17680923 cacccatatgttatactccacaatg-gggtgcctatttaatgtggtgc----taaataggtgaagcacccaccatt 17680993  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 15489461 - 15489406
Alignment:
Q  216 atagacacccatatattatactccgcattgagggtgcctatttaatgtggttctaa 271  Q
    ||||||||||| |||||||||||| || || |||||||||||||||||||| ||||    
T  15489461 atagacacccaaatattatactccacaatgggggtgcctatttaatgtggtgctaa 15489406  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 309
Target Start/End: Complemental strand, 32183860 - 32183771
Alignment:
Q  216 atagacacccatatattatactccgcattgagggtgcctatttaatgtggttctaattaaataggtgacgcacccaccattttagatggtctaa 309  Q
    |||| ||||||||||||||||||| || || ||||||||||||||| || | |    ||||||| ||| |||||||||||| | ||||||||||    
T  32183860 atagccacccatatattatactccacaatgggggtgcctatttaatatgatgc----taaatagatgaagcacccaccattgtggatggtctaa 32183771  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 310
Target Start/End: Original strand, 20969780 - 20969866
Alignment:
Q  220 acacccatatattatactccgcattgagggtgcctatttaatgtggttctaattaaataggtgacgcacccaccattttagatggtctaat 310  Q
    |||||||||| ||||||| | || || ||||||||| |||||||||| ||||    |||||||| | |||||||||| | |||||||||||    
T  20969780 acacccatatgttatacttcacaatgggggtgcctacttaatgtggtgctaa----ataggtgaagtacccaccattgtggatggtctaat 20969866  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 15135052 - 15135108
Alignment:
Q  216 atagacacccatatattatactccgcattg-agggtgcctatttaatgtggttctaa 271  Q
    |||| ||||||| ||||||||||| || || ||||||||||||||||||||| ||||    
T  15135052 atagccacccatgtattatactccacaatggagggtgcctatttaatgtggtgctaa 15135108  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 216 - 310
Target Start/End: Original strand, 8259482 - 8259572
Alignment:
Q  216 atagacacccatatattatactccgcattgagggtgcctatttaatgtggttctaattaaataggtgacgcacccaccattttagatggtctaat 310  Q
    |||| |||||||||||||||| || || || ||||||||||||||| || | |    ||||||| ||| |||||||||||| |||||||||||||    
T  8259482 atagccacccatatattataccccacaatgggggtgcctatttaatatgatgc----taaatagatgaagcacccaccattgtagatggtctaat 8259572  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 309
Target Start/End: Original strand, 15342871 - 15342959
Alignment:
Q  216 atagacacccatatattatactccgcattgagggtgcctatttaatgtggttctaattaaataggtgacgcacccaccattttagatggtctaa 309  Q
    |||| ||||||| ||||||||||| || || |||||| ||||||||||||| ||||    |||||||| |||||||||||| |||||| |||||    
T  15342871 atagccacccatgtattatactccacaatg-gggtgcttatttaatgtggtgctaa----ataggtgaagcacccaccattgtagatgatctaa 15342959  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 307
Target Start/End: Complemental strand, 14625054 - 14624967
Alignment:
Q  216 atagacacccatatattatactccgcattgagggtgcctatttaatgtggttctaattaaataggtgacgcacccaccattttagatggtct 307  Q
    |||| |||||||||||||| |||| || |  | |||||| ||||||||||| ||||    |||||||| |||||||||||| ||||||||||    
T  14625054 atagccacccatatattattctccacaataggagtgcctctttaatgtggtgctaa----ataggtgaagcacccaccattgtagatggtct 14624967  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 277
Target Start/End: Original strand, 42693518 - 42693575
Alignment:
Q  220 acacccatatattatactccgcattgagggtgcctatttaatgtggttctaattaaat 277  Q
    |||||||||| ||||||||| |||||  |||||||||||||| |||| |||| |||||    
T  42693518 acacccatatgttatactccacattggaggtgcctatttaatatggtgctaaataaat 42693575  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 305
Target Start/End: Complemental strand, 48379558 - 48379474
Alignment:
Q  216 atagacacccatatattatactccgcattgagggtgcctatttaatgtggttctaattaaataggtgacgcacccaccattttagatggt 305  Q
    |||| ||||||| ||||||||||  || || |||||||||||||||||||| ||||    |||||||| |||||||||||| | ||||||    
T  48379558 atagccacccatgtattatactctacaatg-gggtgcctatttaatgtggtgctaa----ataggtgaagcacccaccattgtggatggt 48379474  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 316
Target Start/End: Original strand, 9032748 - 9032812
Alignment:
Q  248 ggtgcctatttaatgtggttctaattaaataggtgacgcacccaccattttagatggtctaattgttgc 316  Q
    |||||||||||||||||||     |||||||||||| |||||||||||||| |||||||| | ||||||    
T  9032748 ggtgcctatttaatgtggtg----ttaaataggtgaagcacccaccattttggatggtcttagtgttgc 9032812  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 19494817 - 19494762
Alignment:
Q  216 atagacacccatatattatactccgcattgagggtgcctatttaatgtggttctaa 271  Q
    |||| ||||||||||||||||||| || || ||||||||||||||| |||| ||||    
T  19494817 atagtcacccatatattatactccacaatgggggtgcctatttaatatggtactaa 19494762  T

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Target: scaffold1940 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1940
Description:

Target: scaffold1940; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 634 - 584
Alignment:
Q  216 atagacacccatatattatactccgcattgagggtgcctatttaatgtggt 266  Q
    |||| |||||||||||||| |||| || || ||||||||||||||||||||    
T  634 atagccacccatatattattctccacaatgggggtgcctatttaatgtggt 584  T

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Target: scaffold0001 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 307
Target Start/End: Complemental strand, 428369 - 428283
Alignment:
Q  216 atagacacccatatattatactccgcattgagggtgcctatttaatgtggttctaattaaataggtgacgcacccaccattttagatggtct 307  Q
    |||| ||||||| ||||||||||| || || ||||||||||||||| |||| ||||    |||||||| |||||||||||| | ||||||||    
T  428369 atagccacccatgtattatactccacaatg-gggtgcctatttaatctggtgctaa----ataggtgaagcacccaccattgtggatggtct 428283  T

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