View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16638_low_3 (Length: 692)
Name: NF16638_low_3
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_low_3 |
 | |
|
| [»] chr8 (7 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 649; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 649; E-Value: 0
Query Start/End: Original strand, 20 - 692
Target Start/End: Original strand, 38320707 - 38321379
Alignment:
| Q |
20 |
tggggaatagagaaaaagatcttctctctcactttagatgattcatctgataatgacattttgcaagaactattgaaaactcaacttggtttgcaaaatg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38320707 |
tggggaatagagaaaaagatcttctctctcactttagatgattcatctgagaatgacattttgcaagaactattgaaaactcaacttggtttgcaaaatg |
38320806 |
T |
|
| Q |
120 |
ggttgttatgtgatggagagttctttcacgggcattgttatgcacgtcttttaaaattgattgttgaagaggggttgaaactagttagtgatgctgtgtc |
219 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38320807 |
ggttgttatgtgatggggagttctttcacgggcattgttatgcacgtgttttaaaattgattgttgaagaggggttgaaactagttagtgatgctgtgtc |
38320906 |
T |
|
| Q |
220 |
gaaaattagacagagcatcttgttttttagagattcaaagagtcgaagccaaaaatttaaggagtgcgttgaaaaggttggtggtgttgatagttcagtt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38320907 |
gaaaattagacagagcatcttgttttttagggattcaaagagtcgaaggcaaaaatttaaggagtgcgttgaaaaggttggtggtgttgatagttcagtt |
38321006 |
T |
|
| Q |
320 |
cgcttgcatctggacatgtctatgactgtgaactcaacttatttgatgcttgaaagtgctcttaaatataggtgtgtgtttgaaagtcttcacttgtatg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38321007 |
cgcttgcatctggacatgtctatgactgtgaactcaacttatttgatgcttgaaagtgctcttaaatataggtgtgtgtttgaaagtcttcacttgtatg |
38321106 |
T |
|
| Q |
420 |
atgataattatgagttatgtccttcggtagaagaatggaaaagagttgaaaagatttgtgcgttcttgttgcctttaagggaaactgctaacatgattaa |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38321107 |
atgataattatgagttatgtccttcggtagaagaatggaaaagagttgaaaagatttgtgtgttcttgttgcctttaagggaaactgctaacatgattaa |
38321206 |
T |
|
| Q |
520 |
tggcacagcacatcctacttcaaacatgtattttttgcaagtttggaaagttcaatgtgttttagctgatagtttgagagatgaagatgaagctataaag |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38321207 |
tggcacagcacatcctacttcaaacatgtattttttgcaagtttggaaagttcaatgtgttttagctgatagtttgagagatgaagatgaagctataaag |
38321306 |
T |
|
| Q |
620 |
agaatggctgaaaggatgatgagcaagtttgagaaatattgggatgagtatagtgttgttcttgcattgggag |
692 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38321307 |
agaatggctgaaaggatgatgagcaagtttgagaaatattgggatgagtatagtgttgttcttgcattgggag |
38321379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 20 - 692
Target Start/End: Original strand, 38325457 - 38326129
Alignment:
| Q |
20 |
tggggaatagagaaaaagatcttctctctcactttagatgattcatctgataatgacattttgcaagaactattgaaaactcaacttggtttgcaaaatg |
119 |
Q |
| |
|
|||||||||||||||||||| || ||||| ||||||||||||||| || ||| | || | ||||||| ||||||| |||| |||||||||||||||| |
|
|
| T |
38325457 |
tggggaatagagaaaaagattttttctcttactttagatgattcagtcgagaataatgttctacaagaacaattgaaatctcatcttggtttgcaaaatg |
38325556 |
T |
|
| Q |
120 |
ggttgttatgtgatggagagttctttcacgggcattgttatgcacgtcttttaaaattgattgttgaagaggggttgaaactagttagtgatgctgtgtc |
219 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||| ||||||| ||||||| ||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
38325557 |
ggttgttgtgtgatggagagttctttcacgggcactgttttgcacgtgttttaaatctgattgttgaagacgggttgaaactagttagtgatgccgtgtc |
38325656 |
T |
|
| Q |
220 |
gaaaattagacagagcatcttgttttttagagattcaaagagtcgaagccaaaaatttaaggagtgcgttgaaaaggttggtggtgttgatagttcagtt |
319 |
Q |
| |
|
||||||||| |||||||| ||||| | || ||||||||||| |||| | ||||||||||| ||| ||||||||||||||||||| |||||||| ||| |
|
|
| T |
38325657 |
aaaaattagagagagcatcatgtttgtgaggcattcaaagagtagaagggagaaatttaaggaatgcattgaaaaggttggtggtgtcgatagttccgtt |
38325756 |
T |
|
| Q |
320 |
cgcttgcatctggacatgtctatgactgtgaactcaacttatttgatgcttgaaagtgctcttaaatataggtgtgtgtttgaaagtcttcacttgtatg |
419 |
Q |
| |
|
|||||||||| |||| |||||||| | ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
38325757 |
cgcttgcatcaggactcgtctatgagtctgaactcaacttatttgatgcttgaaagtgctcttaaatatcggcgtgtgtttgaaagtcttcacttgtatg |
38325856 |
T |
|
| Q |
420 |
atgataattatgagttatgtccttcggtagaagaatggaaaagagttgaaaagatttgtgcgttcttgttgcctttaagggaaactgctaacatgattaa |
519 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| | ||||||||| |||||||| ||||| |||||||||||||| | |||||||||||||||||||| |
|
|
| T |
38325857 |
aggataattatgagttatgtccttcggtagaagagtagaaaagagtagaaaagatctgtgcattcttgttgcctttttgtgaaactgctaacatgattaa |
38325956 |
T |
|
| Q |
520 |
tggcacagcacatcctacttcaaacatgtattttttgcaagtttggaaagttcaatgtgttttagctgatagtttgagagatgaagatgaagctataaag |
619 |
Q |
| |
|
|| |||| | ||||||||||| || |||| |||||||||||||||||||| ||||||||| ||| || || |||| ||||||||||||||| ||||||| |
|
|
| T |
38325957 |
tgacacaacgcatcctacttccaatttgtaatttttgcaagtttggaaagtccaatgtgttctagttgctactttgggagatgaagatgaagttataaag |
38326056 |
T |
|
| Q |
620 |
agaatggctgaaaggatgatgagcaagtttgagaaatattgggatgagtatagtgttgttcttgcattgggag |
692 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||| ||||||| |||||||||||||||||||||| |
|
|
| T |
38326057 |
agaatggctgaaaggatgatgagcaagtttgacaaattttggaatgagtacagtgttgttcttgcattgggag |
38326129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 20 - 692
Target Start/End: Original strand, 38299962 - 38300634
Alignment:
| Q |
20 |
tggggaatagagaaaaagatcttctctctcactttagatgattcatctgataatgacattttgcaagaactattgaaaactcaacttggtttgcaaaatg |
119 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||| ||||||| | | ||| | |||||||||||| ||| ||| |||||||| |||||| |||| |
|
|
| T |
38299962 |
tggggaatagaggaaaagattttctctctcactttagaagattcatttaagaataaaattttgcaagaaaaatttcaaaatcaacttgttttgcataatg |
38300061 |
T |
|
| Q |
120 |
ggttgttatgtgatggagagttctttcacgggcattgttatgcacgtcttttaaaattgattgttgaagaggggttgaaactagttagtgatgctgtgtc |
219 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
38300062 |
ggttgttatgtgacggggagttctttcacgggcattgttttgcacgcattttaaaactgattgttgaagaggggttgaaactagttagggatgtcctgtg |
38300161 |
T |
|
| Q |
220 |
gaaaattagacagagcatcttgttttttagagattcaaagagtcgaagccaaaaatttaaggagtgcgttgaaaaggttggtggtgttgatagttcagtt |
319 |
Q |
| |
|
||||||||| | |||||| ||||| | || ||||||||||| |||| |||||||||||||||| ||| ||||||||||||||||||| |||| ||| |
|
|
| T |
38300162 |
taaaattagagatagcatcatgtttgtgaggcattcaaagagtggaagggaaaaatttaaggagtgtattgcaaaggttggtggtgttgattgttccgtt |
38300261 |
T |
|
| Q |
320 |
cgcttgcatctggacatgtctatgactgtgaactcaacttatttgatgcttgaaagtgctcttaaatataggtgtgtgtttgaaagtcttcacttgtatg |
419 |
Q |
| |
|
|||||||||||||||| | ||| | |||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
38300262 |
cgcttgcatctggacacgcctaaaagagtgaactcaacttattcaatgcttgaaagtgctcttaaatatcggcgtgtgtttgaaagtcttcacttgtatg |
38300361 |
T |
|
| Q |
420 |
atgataattatgagttatgtccttcggtagaagaatggaaaagagttgaaaagatttgtgcgttcttgttgcctttaagggaaactgctaacatgattaa |
519 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||| || |||||||| ||||||||||| |
|
|
| T |
38300362 |
atgatagttatgtgttatgtccttcggtagaagagtggaaaagagtacaaaagatttgtgtgttcttgttgccttttagtgaaactgccaacatgattaa |
38300461 |
T |
|
| Q |
520 |
tggcacagcacatcctacttcaaacatgtattttttgcaagtttggaaagttcaatgtgttttagctgatagtttgagagatgaagatgaagctataaag |
619 |
Q |
| |
|
|| |||| ||||||||||||| ||| ||||||||||||||||||||||||| ||||| |||||| |||| ||||| ||||| ||||||||| ||||||| |
|
|
| T |
38300462 |
tgccacaacacatcctacttccaacttgtattttttgcaagtttggaaagtccaatgccttttagttgattgtttgggagatcaagatgaagatataaag |
38300561 |
T |
|
| Q |
620 |
agaatggctgaaaggatgatgagcaagtttgagaaatattgggatgagtatagtgttgttcttgcattgggag |
692 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38300562 |
agaatggctgaaaggatgctgaccaagtttgagaaatattgggatgagtatagtgttgttcttgcaatgggag |
38300634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 20 - 692
Target Start/End: Original strand, 38316612 - 38317284
Alignment:
| Q |
20 |
tggggaatagagaaaaagatcttctctctcactttagatgattcatctgataatgacattttgcaagaactattgaaaactcaacttggtttgcaaaatg |
119 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||| ||| | || ||| ||||| |||||||| ||||||| |||||| ||||| |
|
|
| T |
38316612 |
tggggaatagagaaaaagattttctctctcactttagatgattcatttgagaataatgttatgctagaacaattgaaaaatcaactttgtttgcgaaatg |
38316711 |
T |
|
| Q |
120 |
ggttgttatgtgatggagagttctttcacgggcattgttatgcacgtcttttaaaattgattgttgaagaggggttgaaactagttagtgatgctgtgtc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||| |||| | |||||||| |||||| |||||||||||| ||||||||||||| ||| |||| |
|
|
| T |
38316712 |
ggttgttatgtgatggagagttctttcatgctcattgttttgcatgcgttttaaaactgattgctgaagaggggttaaaactagttagtggtgccgtgta |
38316811 |
T |
|
| Q |
220 |
gaaaattagacagagcatcttgttttttagagattcaaagagtcgaagccaaaaatttaaggagtgcgttgaaaaggttggtggtgttgatagttcagtt |
319 |
Q |
| |
|
|||| || | |||||| ||||| | || ||||||| | | |||| |||||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
38316812 |
tggaattcgagacagcatcatgtttgtgaggaattcaaaaaatagaaggacaaaatttaaggagtgcattgaaaaggttggtggtgttgatagttctgtt |
38316911 |
T |
|
| Q |
320 |
cgcttgcatctggacatgtctatgactgtgaactcaacttatttgatgcttgaaagtgctcttaaatataggtgtgtgtttgaaagtcttcacttgtatg |
419 |
Q |
| |
|
|| ||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||| || ||| ||||||||| |||||||||||| |
|
|
| T |
38316912 |
tgcctgcatctggacatgtctatgagtctgaactcaacttatgtgatgcttgaaagtgctcttaaatatcggcatgtatttgaaagttttcacttgtatg |
38317011 |
T |
|
| Q |
420 |
atgataattatgagttatgtccttcggtagaagaatggaaaagagttgaaaagatttgtgcgttcttgttgcctttaagggaaactgctaacatgattaa |
519 |
Q |
| |
|
|||||||||| |||||||||||| | | | || ||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| |
|
|
| T |
38317012 |
atgataattaccagttatgtcctttagcacatgagtggaaaagagttgaaaagatttgtgcgttcttgctgcctttttatgaaactgccaacatgattaa |
38317111 |
T |
|
| Q |
520 |
tggcacagcacatcctacttcaaacatgtattttttgcaagtttggaaagttcaatgtgttttagctgatagtttgagagatgaagatgaagctataaag |
619 |
Q |
| |
|
|| |||| | ||||||||||||||| ||| ||||||||||||||||||||| ||||||||| ||| |||||||||| ||||||||||| ||| ||||||| |
|
|
| T |
38317112 |
tgacacaacgcatcctacttcaaacttgtgttttttgcaagtttggaaagtccaatgtgttctagttgatagtttgggagatgaagataaagttataaag |
38317211 |
T |
|
| Q |
620 |
agaatggctgaaaggatgatgagcaagtttgagaaatattgggatgagtatagtgttgttcttgcattgggag |
692 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38317212 |
agaatggctgaaaggatgatgagcgagtttgacaaatattgggatgagtatagtgttgttcttgcactgggag |
38317284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 20 - 692
Target Start/End: Original strand, 38313203 - 38313873
Alignment:
| Q |
20 |
tggggaatagagaaaaagatcttctctctcactttagatgattcatctgataatgacattttgcaagaactattgaaaactcaacttggtttgcaaaatg |
119 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||| ||||||| |||||||||||| |
|
|
| T |
38313203 |
tggggaatagagaaaaagattttctctctcactttagatgattcatctgagaatgacattttgcaagaacaattaaaaaatcaactttgtttgcaaaatg |
38313302 |
T |
|
| Q |
120 |
ggttgttatgtgatggagagttctttcacgggcattgttatgcacgtcttttaaaattgattgttgaagaggggttgaaactagttagtga-tgctgtgt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||| ||| || ||||||| |||||||||| || ||||| ||||||||| | || || ||| | |
|
|
| T |
38313303 |
ggttgttatgtgatggagagttctttcatgtgcattgttttgcccgcgttttaaacctgattgttgatgaagggttaaaactagtt-gagagtgttgtct |
38313401 |
T |
|
| Q |
219 |
cgaaaattagacagagcatcttgttttttagagattcaaagagtcgaagccaaaaatttaaggagtgcgttgaaaaggttggtggtgttgatagttcagt |
318 |
Q |
| |
|
|| || ||| ||||||| |||||| | || |||| |||||| || | || ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
38313402 |
gtaagatcagagagagcattttgtttgtaaggcattccaagagtagatggaaattttttaaggagtgcgttgaaaaggttggtggtgttgatagttcggt |
38313501 |
T |
|
| Q |
319 |
tcgcttgcatctggacatgtctatgactgtgaactcaacttatttgatgcttgaaagtgctcttaaatataggtgtgtgtttgaaagtcttcacttgtat |
418 |
Q |
| |
|
|||||||||||| || |||||||||| |||||||||||||||||||||||| ||||||||||||||||| | ||| |||||||||||||||||||||| |
|
|
| T |
38313502 |
tcgcttgcatctagatatgtctatgagagtgaactcaacttatttgatgcttcaaagtgctcttaaatatcagcgtgcgtttgaaagtcttcacttgtat |
38313601 |
T |
|
| Q |
419 |
gatgataattatgagttatgtccttcggtagaagaatggaaaagagttgaaaagatttgtgcgttcttgttgcctttaagggaaactgctaacatgatta |
518 |
Q |
| |
|
|||||| ||||||| | ||||||| ||| |||||| ||||||||||| |||||||||||||| |||||||| ||||| | |||||||| |||||||||| |
|
|
| T |
38313602 |
gatgatgattatgattcatgtcctgcggcagaagactggaaaagagtagaaaagatttgtgcattcttgttacctttttgtgaaactgccaacatgatta |
38313701 |
T |
|
| Q |
519 |
atggcacagcacatcctacttcaaacatgtattttttgcaagtttggaaagttcaatgtgttttagctgatagtttgagagatgaagatgaagctataaa |
618 |
Q |
| |
|
||||| || ||||||||||||| ||| ||||||||| ||||||||||||| ||||||||||||||| |||||||||| |||||||||||||| | || |
|
|
| T |
38313702 |
atggcgcaacacatcctacttccaacttgtatttttcgcaagtttggaaacttcaatgtgttttagttgatagtttgggagatgaagatgaatttgtagc |
38313801 |
T |
|
| Q |
619 |
gagaatggctgaaaggatgatgagcaagtttgagaaatattgggatgagtatagtgttgttcttgcattgggag |
692 |
Q |
| |
|
|||||||||| |||| |||||| |||||||| ||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
38313802 |
gagaatggctaaaagtatgatgggcaagtttaagaaatattgggatgag--tagtgttgttcttgcaatgggag |
38313873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 20 - 692
Target Start/End: Original strand, 38308609 - 38309281
Alignment:
| Q |
20 |
tggggaatagagaaaaagatcttctctctcactttagatgattcatctgataatgacattttgcaagaactattgaaaactcaacttggtttgcaaaatg |
119 |
Q |
| |
|
|||||| ||||||||||||| || || | |||||||||||||||| ||| ||| | || ||||| ||| |||||| ||||||||||||||| |||||| |
|
|
| T |
38308609 |
tggggagtagagaaaaagattttttcatttactttagatgattcatttgagaataatgttctgcaacaacaattgaagactcaacttggtttggaaaatg |
38308708 |
T |
|
| Q |
120 |
ggttgttatgtgatggagagttctttcacgggcattgttatgcacgtcttttaaaattgattgttgaagaggggttgaaactagttagtgatgctgtgtc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||| ||||| | |||||||| |||||||||||||||||| ||||||||||||| ||| |||| |
|
|
| T |
38308709 |
ggttgttatgtgatggagagttctttcatgctcattgttttgcacatgttttaaaactgattgttgaagaggggtgtaaactagttagtggtgccgtgta |
38308808 |
T |
|
| Q |
220 |
gaaaattagacagagcatcttgttttttagagattcaaagagtcgaagccaaaaatttaaggagtgcgttgaaaaggttggtggtgttgatagttcagtt |
319 |
Q |
| |
|
|| |||||| |||||||| ||||| | || |||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
38308809 |
taagattagaaagagcatcatgtttgtgaggcgatcaaagagtcacagggaaaaatttaaggagtgcattgaaaaggttggtggtgttgatagttctgtt |
38308908 |
T |
|
| Q |
320 |
cgcttgcatctggacatgtctatgactgtgaactcaacttatttgatgcttgaaagtgctcttaaatataggtgtgtgtttgaaagtcttcacttgtatg |
419 |
Q |
| |
|
|| |||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| | || |||||||||||||||||||||| |
|
|
| T |
38308909 |
cgtttgcatctagacatgtctatgagagtgaactcaacttatttgatgcttcaaagtgctcttaaatatcagcttgcatttgaaagtcttcacttgtatg |
38309008 |
T |
|
| Q |
420 |
atgataattatgagttatgtccttcggtagaagaatggaaaagagttgaaaagatttgtgcgttcttgttgcctttaagggaaactgctaacatgattaa |
519 |
Q |
| |
|
| ||| |||||| | ||||||| ||| |||||| ||||||||||| |||||||||||||| |||||||||||||| || |||||||| |||| ||| || |
|
|
| T |
38309009 |
acgatggttatgattcatgtcctgcggcagaagagtggaaaagagtagaaaagatttgtgcattcttgttgccttttagcgaaactgccaacacgataaa |
38309108 |
T |
|
| Q |
520 |
tggcacagcacatcctacttcaaacatgtattttttgcaagtttggaaagttcaatgtgttttagctgatagtttgagagatgaagatgaagctataaag |
619 |
Q |
| |
|
||| || |||||| |||||| ||| ||||||||||||||||||||||||| ||||||||| ||| ||||| |||| ||||||||||||||| ||||||| |
|
|
| T |
38309109 |
tggtgcaacacatcgtacttccaacttgtattttttgcaagtttggaaagtccaatgtgttctagttgataatttgggagatgaagatgaagatataaag |
38309208 |
T |
|
| Q |
620 |
agaatggctgaaaggatgatgagcaagtttgagaaatattgggatgagtatagtgttgttcttgcattgggag |
692 |
Q |
| |
|
||||||| |||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38309209 |
agaatggttgaaaggatgttgaccaagtttgagaaatattgggaagagtatagtgttgttcttgcattgggag |
38309281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 20 - 685
Target Start/End: Original strand, 38305881 - 38306536
Alignment:
| Q |
20 |
tggggaatagagaaaaagatcttctctctcactttagatgattcatctgataatgacattttgcaagaactattgaaaactcaacttggtttgcaaaatg |
119 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||| || |||| | | | ||||||||||||||| |||||| |||| ||||||||| |||||| |
|
|
| T |
38305881 |
tggggaatagagaaaaagattttctctctcaatttagaggactcatttaaggacaacattttgcaagaacagttgaaatctcatcttggtttggaaaatg |
38305980 |
T |
|
| Q |
120 |
ggttgttatgtgatggagagttctttcacgggcattgttatgcacgtcttttaaaattgattgttgaagaggggttgaaactagttagtgatgctgtgtc |
219 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||||||||| |||||| |||||||| ||||||||||||||||||| ||||||||||||| || ||||| |
|
|
| T |
38305981 |
gtttgttatgtgatggagagttctttcacaggcattgttctgcacgcgttttaaaactgattgttgaagaggggttaaaactagttagtggtgacgtgtc |
38306080 |
T |
|
| Q |
220 |
gaaaattagacagagcatcttgttttttagagattcaaagagtcgaagccaaaaatttaaggagtgcgttgaaaaggttggtggtgttgatagttcagtt |
319 |
Q |
| |
|
||||||||| |||||||||||||| | || |||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
38306081 |
taaaattagagagagcatcttgtttgtgagggattcaaagagtagaaggaaaaaatttaaggagtgcgttgaaaaggttggtggtattgacagttcagtt |
38306180 |
T |
|
| Q |
320 |
cgcttgcatctggacatgtctatgactgtgaactcaacttatttgatgcttgaaagtgctcttaaatataggtgtgtgtttgaaagtcttcacttgtatg |
419 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
38306181 |
cgcttgcatatggacatgtctatgactgtgaactcaacttatttgatgctcgatagtgctcttaaatatcaacatgtgtttgaaagttttcacttgtatg |
38306280 |
T |
|
| Q |
420 |
atgataattatgagttatgtccttcggtagaagaatggaaaagagttgaaaagatttgtgcgttcttgttgcctttaagggaaactgctaacatgattaa |
519 |
Q |
| |
|
||| | |||||| | |||||||| || |||||||| |||||||||||||| ||| |||||||||| | |||||||| |||||||| || |
|
|
| T |
38306281 |
atggtgattatgtctcgtgtccttc----------tgcaaaagagtggaaaagatttgtgcattcatgttgccttttcgtgaaactgccaacatgatcaa |
38306370 |
T |
|
| Q |
520 |
tggcacagcacatcctacttcaaacatgtattttttgcaagtttggaaagttcaatgtgttttagctgatagtttgagagatgaagatgaagctataaag |
619 |
Q |
| |
|
||| || ||||||| ||||| ||| ||||||||||||||||||||||||| ||||||||| | | |||||||||| ||||||||||||||| |||| | |
|
|
| T |
38306371 |
tggtgcaacacatcccacttccaacttgtattttttgcaagtttggaaagtccaatgtgttcttgttgatagtttgggagatgaagatgaagttatagcg |
38306470 |
T |
|
| Q |
620 |
agaatggctgaaaggatgatgagcaagtttgagaaatattgggatgagtatagtgttgttcttgca |
685 |
Q |
| |
|
||||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38306471 |
agaatggctaaaaggatgatgggcaagtttaagaaatattgggatgagcatagtgttgttcttgca |
38306536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 20 - 692
Target Start/End: Complemental strand, 38850733 - 38850061
Alignment:
| Q |
20 |
tggggaatagagaaaaagatcttctctctcactttagatgattcatctgataatgacattttgcaagaactattgaaaactcaacttggtttgcaaaatg |
119 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| | |||||||||||||| ||||| ||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
38850733 |
tggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgagattttgcaagaacaattgaaaactcaacttgttttgcaaaatg |
38850634 |
T |
|
| Q |
120 |
ggttgttatgtgatggagagttctttcacgggcattgttatgcacgtcttttaaaattgattgttgaagaggggttgaaactagttagtgatgctgtgtc |
219 |
Q |
| |
|
| |||||||||||||||||||||||||| | | |||||| |||||| ||||||| ||| |||||||| | ||| ||||||||||| || |||| |
|
|
| T |
38850633 |
gtttgttatgtgatggagagttctttcatgtgaattgttttgcacgcgttttaaatcagatagttgaagaagcgttaaaactagttagctgtggtgtgca |
38850534 |
T |
|
| Q |
220 |
gaaaattagacagagcatcttgttttttagagattcaaagagtcgaagccaaaaatttaaggagtgcgttgaaaaggttggtggtgttgatagttcagtt |
319 |
Q |
| |
|
|| || ||| |||| ||| ||||| | || ||||||||||| | || ||||||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
38850533 |
taagatcagagagagtatcatgtttgtgaggcattcaaagagtaggagggaaaaatttaaggagtgctttgaaaaggttggtggtgttgatagttcggtt |
38850434 |
T |
|
| Q |
320 |
cgcttgcatctggacatgtctatgactgtgaactcaacttatttgatgcttgaaagtgctcttaaatataggtgtgtgtttgaaagtcttcacttgtatg |
419 |
Q |
| |
|
| ||| ||| |||| || ||||||| | ||| ||||||||| || |||||||||| ||||||||||| |||||| |||||||||| |||||||||||| |
|
|
| T |
38850433 |
cacttacatttggatatatctatgagtttgagttcaacttatatgttgcttgaaagagctcttaaataccggtgtgcgtttgaaagttttcacttgtatg |
38850334 |
T |
|
| Q |
420 |
atgataattatgagttatgtccttcggtagaagaatggaaaagagttgaaaagatttgtgcgttcttgttgcctttaagggaaactgctaacatgattaa |
519 |
Q |
| |
|
|||||| |||||| ||||||||||||| ||||| ||||||||||| |||||||||||||| ||| |||||||||| | |||||||| ||||||||||| |
|
|
| T |
38850333 |
atgatagttatgatttatgtccttcggcggaagagtggaaaagagtagaaaagatttgtgcattcctgttgcctttttgtgaaactgccaacatgattaa |
38850234 |
T |
|
| Q |
520 |
tggcacagcacatcctacttcaaacatgtattttttgcaagtttggaaagttcaatgtgttttagctgatagtttgagagatgaagatgaagctataaag |
619 |
Q |
| |
|
| ||||| ||||||||||||| ||| |||||||||| |||||||||||||| ||||||||| ||| |||||||||| ||||||||||||||| ||||||| |
|
|
| T |
38850233 |
tagcacaacacatcctacttccaacttgtattttttacaagtttggaaagtccaatgtgttctagttgatagtttgggagatgaagatgaagatataaag |
38850134 |
T |
|
| Q |
620 |
agaatggctgaaaggatgatgagcaagtttgagaaatattgggatgagtatagtgttgttcttgcattgggag |
692 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38850133 |
aaaatggctgaaaggatgatgagcaagtttgagaaatattgggatgagtatagtgttgttcttgcattgggag |
38850061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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