View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16638_low_33 (Length: 413)
Name: NF16638_low_33
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 17 - 402
Target Start/End: Complemental strand, 30315680 - 30315295
Alignment:
| Q |
17 |
atttggcttatcacattgtcttcctcaccttcaattaagtagaaccaaatattttaaataatgttaacatgtcattnnnnnnnnnnnntaactaatatag |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
30315680 |
atttggcttatcacattgtcttcctcaccttcaattaagtagaaccaaatattttaaataatgttaacatgtcattaaaaataaaaaataactaatatag |
30315581 |
T |
|
| Q |
117 |
gctacattcaatttcatttaattttggtagaaaactattgtaattaggccatacagaaggaaagagactgagtgagaatatagtatataccagcaaggaa |
216 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
30315580 |
gctacattcaatttaatttaattttggtagaaaactattgtaattaggccatacagaaggaaagagaccgagtgagaatatagtatataccagcaaggaa |
30315481 |
T |
|
| Q |
217 |
gttcctctgattgttctcagcattgataccaaatccaagcaaagagagatccgaggaagcctttacgacaattggatgacctgccggaattacataaaca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
30315480 |
gttcctctgattgttctcagcattgataccaaatccaagcaaagagagatccgaggaagcctttacgacaattggatgacctgcgggaattacataaaca |
30315381 |
T |
|
| Q |
317 |
tcacctggagacaacctagccctatacctttgtacttgttggcttctttcttgttgttgttcatcttcctcatattctctctgctc |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
30315380 |
tcacctggagacaacctagccctatacctttgtacttgttggcttctttcttgttgttgttcatcttcttcatattctctctgctc |
30315295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 46 - 402
Target Start/End: Complemental strand, 30287064 - 30286714
Alignment:
| Q |
46 |
ttcaattaagtagaaccaaatattttaaataatgttaacatgtcattnnnnnnnnnnnntaactaatataggctacattcaatttcatttaattttggta |
145 |
Q |
| |
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||||||||||||||| ||||| |||||| |||||||||||||||||| | ||||| ||| |||||||||||||| |||||||||||||| |
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| T |
30287064 |
ttcaattaagtagaagcaaatcttttaattaatgttaacatgtcattaaaaataaaaaattactaacatatgctacattcaatttaatttaattttggta |
30286965 |
T |
|
| Q |
146 |
gaaaactattgtaattaggccatacagaaggaaagagactgagtgagaatatagtatataccagcaaggaagttcctctgattgttctcagcattgatac |
245 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||| ||||||||||| |||||||||| |
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|
| T |
30286964 |
ggaaactattgtaattaggccatacagaa----agagactgagtgagaatacagtata--ccagcaaggaagttcctttgattgttctccgcattgatac |
30286871 |
T |
|
| Q |
246 |
caaatccaagcaaagagagatccgaggaagcctttacgacaattggatgacctgccggaattacataaacatcacctggagacaacctagccctatacct |
345 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30286870 |
caaatccaagcaaagagagatccgaagaagcagttacgacaattggatgacctgccggaattacataaacatcacctggagacaacctagccctatacct |
30286771 |
T |
|
| Q |
346 |
ttgtacttgttggcttctttcttgttgttgttcatcttcctcatattctctctgctc |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30286770 |
ttgtacttgttggcttctttcttgttgttgttcatcttcctcatattctctctgctc |
30286714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 46 - 402
Target Start/End: Complemental strand, 30292098 - 30291748
Alignment:
| Q |
46 |
ttcaattaagtagaaccaaatattttaaataatgttaacatgtcattnnnnnnnnnnnntaactaatataggctacattcaatttcatttaattttggta |
145 |
Q |
| |
|
||||||||||||||| ||||| |||||| |||||||||||||||||| | ||||| ||| |||||||||||||| |||||||||||||| |
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|
| T |
30292098 |
ttcaattaagtagaagcaaatcttttaattaatgttaacatgtcattaaaaataaaaaattactaacatatgctacattcaatttaatttaattttggta |
30291999 |
T |
|
| Q |
146 |
gaaaactattgtaattaggccatacagaaggaaagagactgagtgagaatatagtatataccagcaaggaagttcctctgattgttctcagcattgatac |
245 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||| ||||||| ||||||||||||||||||| |
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|
| T |
30291998 |
ggaaactattgtaattaggccatacagaa----agagactgagtgagaatacagtata--ccagcaaggaagctcctctggttgttctcagcattgatac |
30291905 |
T |
|
| Q |
246 |
caaatccaagcaaagagagatccgaggaagcctttacgacaattggatgacctgccggaattacataaacatcacctggagacaacctagccctatacct |
345 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||| |||||| |||||| ||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
30291904 |
caaatccaagcaaagagagatccgacgaagcttttacgacatttggataacctgctggaattacataaacatcacctggagtcaacctagccctgtacct |
30291805 |
T |
|
| Q |
346 |
ttgtacttgttggcttctttcttgttgttgttcatcttcctcatattctctctgctc |
402 |
Q |
| |
|
||| |||||||||||||| |||| || |||||||||||||||||||||||||||||| |
|
|
| T |
30291804 |
ttgcacttgttggcttctctcttcttcttgttcatcttcctcatattctctctgctc |
30291748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 46 - 402
Target Start/End: Complemental strand, 30304732 - 30304382
Alignment:
| Q |
46 |
ttcaattaagtagaaccaaatattttaaataatgttaacatgtcattnnnnnnnnnnnntaactaatataggctacattcaatttcatttaattttggta |
145 |
Q |
| |
|
||||||||||||||| ||||| |||||| |||||||||||||||||| | ||||| ||| |||||||||||||| |||||||||||||| |
|
|
| T |
30304732 |
ttcaattaagtagaagcaaatcttttaattaatgttaacatgtcattaaaaataaaaaattactaacatatgctacattcaatttaatttaattttggta |
30304633 |
T |
|
| Q |
146 |
gaaaactattgtaattaggccatacagaaggaaagagactgagtgagaatatagtatataccagcaaggaagttcctctgattgttctcagcattgatac |
245 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||| ||||||| ||||||||||||||||||| |
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|
| T |
30304632 |
ggaaactattgtaattaggccatacagaa----agagactgagtgagaatacagtata--ccagcaaggaagctcctctggttgttctcagcattgatac |
30304539 |
T |
|
| Q |
246 |
caaatccaagcaaagagagatccgaggaagcctttacgacaattggatgacctgccggaattacataaacatcacctggagacaacctagccctatacct |
345 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||| |||||| |||||| ||||||||||||||||||||||||| |||||||||||| ||||| |
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|
| T |
30304538 |
caaatccaagcaaagagagatccgacgaagcttttacgacatttggataacctgctggaattacataaacatcacctggagtcaacctagccctgtacct |
30304439 |
T |
|
| Q |
346 |
ttgtacttgttggcttctttcttgttgttgttcatcttcctcatattctctctgctc |
402 |
Q |
| |
|
||| |||||||||||||| |||| || |||||||||||||||||||||||||||||| |
|
|
| T |
30304438 |
ttgcacttgttggcttctctcttcttcttgttcatcttcctcatattctctctgctc |
30304382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 204 - 384
Target Start/End: Complemental strand, 30299370 - 30299187
Alignment:
| Q |
204 |
taccagcaaggaagttcctctgattgttctcagcattgataccaaatccaagcaaagagagatccgaggaagcctttacgacaattggatgacctgccgg |
303 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||| |
|
|
| T |
30299370 |
tacctgcaaggaagttcctctcgttgttctcagcattgataccaaatccaagcaaagagagatccgaggaagcgctaacgacagttggatgacctgccgg |
30299271 |
T |
|
| Q |
304 |
aattacataaacatcacctggagacaacctagccctatacctttgtacttgttggcttct---ttcttgttgttgttcatcttc |
384 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| || |||||||| |||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
30299270 |
aattacatacacatcacctggagacaacctagctctgtacctttgcacttgttggcttctctcttcttcttgttgttcatcttc |
30299187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 30300022 - 30299989
Alignment:
| Q |
17 |
atttggcttatcacattgtcttcctcaccttcaa |
50 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
30300022 |
atttggcttatcacattgtcttcctcaccttcaa |
30299989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 30287146 - 30287113
Alignment:
| Q |
17 |
atttggcttatcacattgtcttcctcaccttcaa |
50 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
30287146 |
atttggcttatcacattgtcctcctcaccttcaa |
30287113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 30292180 - 30292147
Alignment:
| Q |
17 |
atttggcttatcacattgtcttcctcaccttcaa |
50 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
30292180 |
atttggcttatcacattgtcctcctcaccttcaa |
30292147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 30304814 - 30304781
Alignment:
| Q |
17 |
atttggcttatcacattgtcttcctcaccttcaa |
50 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
30304814 |
atttggcttatcacattgtcctcctcaccttcaa |
30304781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 202 - 336
Target Start/End: Complemental strand, 46810333 - 46810199
Alignment:
| Q |
202 |
tataccagcaaggaagttcctctgattgttctcagcattgataccaaatccaagcaaagagagatccgaggaagcctttacgacaattggatgacctgcc |
301 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||| ||| ||||| ||||||||| |||| | | | ||| ||||||||| |
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|
| T |
46810333 |
tatacctgcaagaaagtttctctgattgttctcagcattgataccaaagccaaggaaattgagattcgaggaagcatttatggctactgggtgacctgcc |
46810234 |
T |
|
| Q |
302 |
ggaattacataaacatcacctggagacaacctagc |
336 |
Q |
| |
|
||||||| | ||| || |||||||||| |||||| |
|
|
| T |
46810233 |
ggaattataacaacgtcgcctggagacagcctagc |
46810199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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