View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_low_35 (Length: 410)
Name: NF16638_low_35
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 7e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 40788274 - 40788093
Alignment:
| Q |
9 |
acatcatcaataacaacaacaataagaagaacgagaataataaaaagaatgaaacgaaaccaactaacgtcattttgaaggtcgacatgcattgtgaagg |
108 |
Q |
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| T |
40788274 |
acatcatcaataacaacaacaataagaagaacgagaataataaaaataatgaaacgaaaccaactaacgtcattttgaaggtcgacatgcattgtgaagg |
40788175 |
T |
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| Q |
109 |
ttgttcttccaaaatcgtcaaattcatccaaggtttcgaaggttgctactttttctctcattcctaaattatattcatcaac |
190 |
Q |
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| T |
40788174 |
ttgttcttccaaaatcgtcaaattcatccaaggtttcgaaggttgctactttttctctcattcctaaattatattcatcaac |
40788093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 251 - 394
Target Start/End: Complemental strand, 40788033 - 40787890
Alignment:
| Q |
251 |
aactgaagcattgaaccttcttattgaaggcttcgaaaaacttgatattggtaatggcggaaagttaaccgtcaccggaaccgtcgatgctggaaaactc |
350 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40788033 |
aactgaagcattgaaccttcttattgaaggcttcgagaaacttgatattggtaatggcggaaagttaaccgtcaccggaaccgtcgatgctggaaaactc |
40787934 |
T |
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| Q |
351 |
agagataaccttgctattaaaacgaagaagaaagttgacttcat |
394 |
Q |
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| T |
40787933 |
agagataaccttactattaaaacgaagaagaaagttgacttcat |
40787890 |
T |
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