View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_low_38 (Length: 374)
Name: NF16638_low_38
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 20 - 357
Target Start/End: Original strand, 23470354 - 23470697
Alignment:
| Q |
20 |
agaaagcagtaaaa-gagtattcactggttttcaattaaccctagtactactgttttggctcatacaaa--gtacatgcatcactcatcttttgttcagt |
116 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
23470354 |
agaaagcagtaaaaagagtattcactggttttcaattaaccctagtactactgttttggctcatacaaaaagtacatgcatctctcatcttttgttcagt |
23470453 |
T |
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| Q |
117 |
cacatatttatgtgtgtgtatagagaaatgtcaatttcaggtatacaatttgttacttgtatatgtgttaaattaaggaaaggaacagaaaacaacatat |
216 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23470454 |
cacatatttatgtgtgt--atagagaaatgtcaatttcaggtacacaatttgttacttgtatatgtgttaaattaaggaaaggaacagaaaacaacatat |
23470551 |
T |
|
| Q |
217 |
gaaaattttctttt-----ggatggctacatgcagattttaattcgttttggttaacaaaaacatcatctgcgtcgaactgtaaatattaatcatcatga |
311 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
23470552 |
gaaatttttcttttaatttggatggctacatgcagattttaattctttttggttaacaaaaacatcatctgcgtggaaccgtaaatattaatcatcatga |
23470651 |
T |
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| Q |
312 |
gagaactaagattcatttaagaggttgatctcttcctacaaatatt |
357 |
Q |
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|| || |||||||||||||||||||||| ||||||||||||||||| |
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| T |
23470652 |
gaaaattaagattcatttaagaggttgacctcttcctacaaatatt |
23470697 |
T |
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