View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_low_40 (Length: 373)
Name: NF16638_low_40
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 362
Target Start/End: Original strand, 24726433 - 24726781
Alignment:
| Q |
17 |
ataaggttgttggttgagtacttgaatctatcaatatcatcccagtcttggtatatgaaagagtgttcccaagaaatggaattgagtttcataatcttaa |
116 |
Q |
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| T |
24726433 |
ataaggttgttggttaagtacttgaatctatcaatatcataccagccttggtatatgaaagagtgttcccaagaaatggaattgagtttcataatcttaa |
24726532 |
T |
|
| Q |
117 |
agtgttgatatactacagaaattttcctgcatttttgaaatttagtagtacgttgtattaattatcgtatgggacttagcatgtaaaaatgcctctccat |
216 |
Q |
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| T |
24726533 |
agtgttgatatactatagaaattttcctgcatttt-gaaatttagtattacgttgtattaattatcgtatgggacttagcatgtaaaaatgcctctccat |
24726631 |
T |
|
| Q |
217 |
tcaatccatcgcaagtcaattattaatggtgatatgcatgactgcaaaatgcctgacaaacatgttgtaaatgttccaa----tataaaatacgcattca |
312 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24726632 |
tcaatccatcgcaagtcaattattaatggtgatatacgtgactgcaaaatgcctgacaaacatgttgtaaatgttccaatatttataaaatacgcattca |
24726731 |
T |
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| Q |
313 |
aaggggacttagcatgtaaatgtttcctgcacagtttttgtttgattctt |
362 |
Q |
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| T |
24726732 |
aaggggacttagcatgtaaatgtttcctgcacagtttttgtttgattctt |
24726781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 24888536 - 24888402
Alignment:
| Q |
17 |
ataaggttgttggttgagtacttgaatctatcaatatcatcccagtcttggtatatgaaagagtgttcccaagaaatggaattgagtttcataatctt-a |
115 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||| | |
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| T |
24888536 |
ataagcttgttggttgagtacttgaatctatcaatatcatcccagccttggtatatgaaagagt-ttcccaataaatggaattgagtttcataatcttaa |
24888438 |
T |
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| Q |
116 |
aagtgttgatatactacagaaattttcctgcatttt |
151 |
Q |
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| T |
24888437 |
aagtgttgatatactatagaaattttcctgcatttt |
24888402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 204 - 313
Target Start/End: Complemental strand, 24888397 - 24888290
Alignment:
| Q |
204 |
aatgcctctccattcaatccatcgcaagtcaattattaatggtgatatgcatgactgcaaaatgcctgacaaacatgttgtaaatgttccaatata--aa |
301 |
Q |
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||||||||||||| |||||||| |||| |||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||||||| || |
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| T |
24888397 |
aatgcctctccatccaatccattgcaaatcaattattaccagtgat----atgactgcaaaatgcctcacaaagatgttgtaaatgttccaatatatgaa |
24888302 |
T |
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| Q |
302 |
atacgcattcaa |
313 |
Q |
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|||||||||||| |
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| T |
24888301 |
atacgcattcaa |
24888290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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