View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16638_low_43 (Length: 363)

Name: NF16638_low_43
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16638_low_43
NF16638_low_43
[»] chr4 (22 HSPs)
chr4 (18-218)||(56263143-56263343)
chr4 (241-352)||(56262403-56262521)
chr4 (284-352)||(56253947-56254015)
chr4 (284-352)||(56265611-56265679)
chr4 (20-131)||(56253787-56253889)
chr4 (223-264)||(7842539-7842580)
chr4 (70-131)||(56265492-56265553)
chr4 (205-253)||(40347538-40347586)
chr4 (216-264)||(142534-142582)
chr4 (216-264)||(20774190-20774238)
chr4 (216-264)||(44792646-44792694)
chr4 (216-263)||(53732430-53732477)
chr4 (218-264)||(53148621-53148667)
chr4 (223-264)||(30573719-30573760)
chr4 (219-264)||(56262476-56262521)
chr4 (216-264)||(7841539-7841587)
chr4 (216-264)||(19080380-19080428)
chr4 (216-264)||(24551933-24551981)
chr4 (224-264)||(26147042-26147082)
chr4 (216-264)||(40495090-40495138)
chr4 (224-264)||(53773596-53773636)
chr4 (216-264)||(55976161-55976209)
[»] chr3 (13 HSPs)
chr3 (216-264)||(48764472-48764520)
chr3 (216-264)||(13477052-13477100)
chr3 (216-264)||(37988228-37988276)
chr3 (216-264)||(21727539-21727587)
chr3 (216-264)||(27082771-27082819)
chr3 (213-264)||(11652285-11652336)
chr3 (206-260)||(11203215-11203269)
chr3 (223-264)||(14871155-14871196)
chr3 (219-264)||(48507042-48507087)
chr3 (216-264)||(17603971-17604019)
chr3 (216-264)||(20212975-20213023)
chr3 (241-269)||(48507042-48507070)
chr3 (216-264)||(48648198-48648246)
[»] chr7 (20 HSPs)
chr7 (216-264)||(15305250-15305298)
chr7 (216-263)||(23901105-23901152)
chr7 (216-264)||(13785603-13785651)
chr7 (216-264)||(19068405-19068453)
chr7 (216-264)||(30661465-30661513)
chr7 (217-264)||(1417603-1417650)
chr7 (217-264)||(47719714-47719761)
chr7 (223-264)||(21496993-21497034)
chr7 (219-264)||(37949602-37949647)
chr7 (219-264)||(38225985-38226030)
chr7 (223-264)||(45099139-45099180)
chr7 (224-264)||(3029208-3029248)
chr7 (216-264)||(14305084-14305132)
chr7 (224-264)||(24389626-24389666)
chr7 (241-269)||(25343249-25343277)
chr7 (224-264)||(27948448-27948488)
chr7 (241-269)||(40273574-40273602)
chr7 (216-264)||(45099903-45099951)
chr7 (216-264)||(46428181-46428229)
chr7 (226-258)||(48669804-48669836)
[»] chr6 (8 HSPs)
chr6 (216-264)||(19323776-19323824)
chr6 (224-264)||(3623177-3623217)
chr6 (219-264)||(1366965-1367010)
chr6 (216-264)||(2512432-2512480)
chr6 (224-264)||(8488471-8488511)
chr6 (216-264)||(9441989-9442037)
chr6 (216-264)||(9442070-9442118)
chr6 (216-264)||(10171270-10171318)
[»] chr2 (19 HSPs)
chr2 (216-264)||(9540326-9540374)
chr2 (216-264)||(38361062-38361110)
chr2 (219-264)||(24933834-24933879)
chr2 (216-264)||(9276339-9276387)
chr2 (224-264)||(18174679-18174719)
chr2 (216-264)||(18820427-18820475)
chr2 (216-264)||(27177907-27177955)
chr2 (216-264)||(29719441-29719489)
chr2 (223-264)||(1296381-1296422)
chr2 (223-264)||(18821240-18821281)
chr2 (223-264)||(22560577-22560618)
chr2 (219-264)||(29513156-29513201)
chr2 (223-264)||(36237633-36237674)
chr2 (223-263)||(8541753-8541793)
chr2 (226-262)||(8667431-8667467)
chr2 (224-264)||(11750260-11750300)
chr2 (224-264)||(22301879-22301919)
chr2 (216-260)||(24121303-24121347)
chr2 (216-264)||(36238739-36238787)
[»] chr1 (15 HSPs)
chr1 (216-264)||(25468504-25468552)
chr1 (216-264)||(19172585-19172633)
chr1 (216-264)||(24991964-24992012)
chr1 (216-264)||(27256722-27256770)
chr1 (218-264)||(34309240-34309286)
chr1 (216-262)||(46391878-46391924)
chr1 (219-264)||(17171928-17171973)
chr1 (219-264)||(34308470-34308515)
chr1 (224-264)||(169637-169677)
chr1 (216-264)||(7559209-7559257)
chr1 (216-264)||(8987784-8987832)
chr1 (224-264)||(13262835-13262875)
chr1 (216-264)||(37853145-37853193)
chr1 (233-265)||(40022161-40022193)
chr1 (224-264)||(47967864-47967904)
[»] chr8 (10 HSPs)
chr8 (219-264)||(17725663-17725708)
chr8 (216-264)||(3165131-3165179)
chr8 (216-264)||(31642096-31642144)
chr8 (216-264)||(39779850-39779898)
chr8 (216-262)||(27441461-27441507)
chr8 (223-264)||(37064818-37064859)
chr8 (223-264)||(39778920-39778961)
chr8 (241-269)||(45929-45957)
chr8 (216-264)||(9197090-9197138)
chr8 (216-264)||(41974635-41974683)
[»] chr5 (17 HSPs)
chr5 (216-269)||(10554516-10554569)
chr5 (216-264)||(1281830-1281878)
chr5 (224-264)||(17071226-17071266)
chr5 (216-264)||(19360485-19360533)
chr5 (224-264)||(34600263-34600303)
chr5 (219-264)||(1554092-1554137)
chr5 (219-264)||(6476800-6476845)
chr5 (223-264)||(14478922-14478963)
chr5 (223-264)||(29087926-29087967)
chr5 (224-264)||(235594-235634)
chr5 (216-264)||(237830-237878)
chr5 (224-264)||(2313949-2313989)
chr5 (216-264)||(7632089-7632137)
chr5 (216-264)||(19128764-19128812)
chr5 (216-264)||(19359698-19359746)
chr5 (241-269)||(22799769-22799797)
chr5 (216-264)||(27364496-27364544)
[»] scaffold0085 (1 HSPs)
scaffold0085 (219-264)||(22080-22125)
[»] scaffold2007 (1 HSPs)
scaffold2007 (216-264)||(745-793)
[»] scaffold0418 (1 HSPs)
scaffold0418 (216-264)||(6894-6942)
[»] scaffold0176 (1 HSPs)
scaffold0176 (216-264)||(26586-26634)


Alignment Details
Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 56263343 - 56263143
Alignment:
Q  18 catattggagaagttcatgtgccttccgagttcgaattgctctaaacctcaaaggtctcaagtatgagtacaaagcagttgatctttttaagggagaaca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  56263343 catattggagaagttcatgtgccttccgagttcgaattgctctaaacctcaaaggtctcaagtacgagtacaaagcagttgatctttttaagggagaaca 56263244  T
Q  118 atatcatcctggttcgttcctctcttttttccttatcctttatactattatcaattacatacaactctgtatgtttaattaatcttttttattattatta 217  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||    
T  56263243 atatcatcctggttcgttcctctcttttttccttaccctttatactattatcaattacatacaaccctctatgcttaattaatcttttttattattatta 56263144  T
Q  218 t 218  Q
    |    
T  56263143 t 56263143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 241 - 352
Target Start/End: Complemental strand, 56262521 - 56262403
Alignment:
Q  241 ggtgtcaacgaattcattgacacctggtg-------atcctatctctattattattatttcattttcatatctttcagattttctcaagctcaaccctgt 333  Q
    |||||||||||||||||||||||||||||       ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56262521 ggtgtcaacgaattcattgacacctggtgtcaacggatcctgtctctattattattatttcattttcatatctttcagattttctcaagctcaaccctgt 56262422  T
Q  334 tggttttgttcctgttctt 352  Q
    |||||||||||||||||||    
T  56262421 tggttttgttcctgttctt 56262403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 56253947 - 56254015
Alignment:
Q  284 attattatttcattttcatatctttcagattttctcaagctcaaccctgttggttttgttcctgttctt 352  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  56253947 attattatttcattttcatatctttcagattttctccagctcaaccctgttggttttgttcctgttctt 56254015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 56265611 - 56265679
Alignment:
Q  284 attattatttcattttcatatctttcagattttctcaagctcaaccctgttggttttgttcctgttctt 352  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  56265611 attattatttcattttcatatctttcagattttctccagctcaaccctgttggttttgttcctgttctt 56265679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 56253787 - 56253889
Alignment:
Q  20 tattggagaagttcatgtgccttccgagttcgaattgctctaaacctcaaaggtctcaagtatgagtacaaagcagttgatctttttaagggagaacaat 119  Q
    |||||||||||||||||| ||||||||||||| || ||||| |||||||||         ||||| |||||||||||| |||| || |||||||||||||    
T  56253787 tattggagaagttcatgttccttccgagttcggatcgctctcaacctcaaa---------tatgattacaaagcagttaatctgttgaagggagaacaat 56253877  T
Q  120 atcatcctggtt 131  Q
     |||||||||||    
T  56253878 ctcatcctggtt 56253889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 264
Target Start/End: Complemental strand, 7842580 - 7842539
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  7842580 caggatccattgacatcaggtgtcaacgaattcgttgacacc 7842539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 56265492 - 56265553
Alignment:
Q  70 aggtctcaagtatgagtacaaagcagttgatctttttaagggagaacaatatcatcctggtt 131  Q
    ||||||||| ||||| |||||||||||| |||| || ||||||||||||| |||||||||||    
T  56265492 aggtctcaaatatgattacaaagcagttaatctgttgaagggagaacaatctcatcctggtt 56265553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 40347538 - 40347586
Alignment:
Q  205 tttattattattatgagacaggatccattgacatcaggtgtcaacgaat 253  Q
    |||||| ||||| |||||||||||||||||||| |||||||||||||||    
T  40347538 tttatttttattttgagacaggatccattgacaccaggtgtcaacgaat 40347586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 142582 - 142534
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||| ||||||| |||||| | ||||||||||||||||||||||||    
T  142582 tatgagataggatccgttgacaccgggtgtcaacgaattcattgacacc 142534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 20774238 - 20774190
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| ||||||||||||||| |||||||||||| |||| ||||||||    
T  20774238 tatgagtcaggatccattgacaccaggtgtcaacggattcgttgacacc 20774190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 44792694 - 44792646
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| ||||||||||||||| ||||||||||||||||| || |||||    
T  44792694 tatgagtcaggatccattgacaccaggtgtcaacgaattcgttaacacc 44792646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 263
Target Start/End: Original strand, 53732430 - 53732477
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacac 263  Q
    ||||||||||||||| |||||| |||||||||||| |||| |||||||    
T  53732430 tatgagacaggatccgttgacaccaggtgtcaacggattcgttgacac 53732477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 264
Target Start/End: Complemental strand, 53148667 - 53148621
Alignment:
Q  218 tgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||| |||||||||||||||||||||||||||  |||| ||||||||    
T  53148667 tgagtcaggatccattgacatcaggtgtcaacagattcgttgacacc 53148621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 264
Target Start/End: Complemental strand, 30573760 - 30573719
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||||||||||| |||||||||||| |||| ||||||||    
T  30573760 caggatccattgacaccaggtgtcaacggattcgttgacacc 30573719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 56262476 - 56262521
Alignment:
Q  219 gagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||||||||| |||||| |||||||||| |||||| ||||||||    
T  56262476 gagacaggatccgttgacaccaggtgtcaatgaattcgttgacacc 56262521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 7841539 - 7841587
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| |||||||| |||||||||||||| |||| |||| ||||||||    
T  7841539 tatgagtcaggatccgttgacatcaggtgttaacggattcgttgacacc 7841587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 19080380 - 19080428
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||||||||||  |||||| |||||||||||| |||| ||||||||    
T  19080380 tatgagacaggatctgttgacaccaggtgtcaacggattcgttgacacc 19080428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 24551981 - 24551933
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||| |||||||||||||| |||||||||||| |||  ||||||||    
T  24551981 tatgagataggatccattgacaccaggtgtcaacggatttgttgacacc 24551933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 26147082 - 26147042
Alignment:
Q  224 aggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||| |||||| ||||||||||||||||| ||||||||    
T  26147082 aggatccgttgacaccaggtgtcaacgaattcgttgacacc 26147042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 40495090 - 40495138
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| |||||||| |||||| ||||||||||| ||||| ||||||||    
T  40495090 tatgagtcaggatccgttgacaccaggtgtcaacaaattcgttgacacc 40495138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 53773636 - 53773596
Alignment:
Q  224 aggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||| ||||||||||||||||||| |||| ||||||||    
T  53773636 aggatccgttgacatcaggtgtcaacggattcgttgacacc 53773596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 55976161 - 55976209
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||||||| |||| |||||| |||||||||||| |||| ||||||||    
T  55976161 tatgagacagaatccgttgacaccaggtgtcaacggattcgttgacacc 55976209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 48764472 - 48764520
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  48764472 tatgagtcaggatccattgacatcaggtgtcaacgaattcgttgacacc 48764520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 13477052 - 13477100
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| |||||||| |||||| ||||||||||||||||||||||||||    
T  13477052 tatgagtcaggatccgttgacaccaggtgtcaacgaattcattgacacc 13477100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 37988276 - 37988228
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| ||||||||||||||| ||||||||||||||||| ||||||||    
T  37988276 tatgagtcaggatccattgacaccaggtgtcaacgaattcgttgacacc 37988228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 21727587 - 21727539
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||||||||||| |||||| |||||||||||| |||| ||||||||    
T  21727587 tatgagacaggatccgttgacaccaggtgtcaacggattcgttgacacc 21727539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 27082771 - 27082819
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| |||||||||||||||  |||||||||||||||| ||||||||    
T  27082771 tatgagtcaggatccattgacactaggtgtcaacgaattcgttgacacc 27082819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 264
Target Start/End: Original strand, 11652285 - 11652336
Alignment:
Q  213 tattatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||||||| | |||||||| |||||||||||||||| |||| ||||||||    
T  11652285 tattatgagatatgatccattaacatcaggtgtcaacggattcgttgacacc 11652336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 11203269 - 11203215
Alignment:
Q  206 ttattattattatgagacaggatccattgacatcaggtgtcaacgaattcattga 260  Q
    |||||||||||||||| ||| |||| |||||| ||||||||||| ||||| ||||    
T  11203269 ttattattattatgagtcagaatccgttgacaccaggtgtcaacaaattcgttga 11203215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 14871155 - 14871196
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||||| |||||| ||||||||||||||||| ||||||||    
T  14871155 caggatccgttgacaccaggtgtcaacgaattcgttgacacc 14871196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 48507087 - 48507042
Alignment:
Q  219 gagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||||||||| |||||| |||||||||| |||||| ||||||||    
T  48507087 gagacaggatccgttgacaccaggtgtcaatgaattcgttgacacc 48507042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 17604019 - 17603971
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||| |||||||| ||||| |||||||||||| |||| ||||||||    
T  17604019 tatgagataggatccaatgacaccaggtgtcaacggattcgttgacacc 17603971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 20212975 - 20213023
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| ||| |||| |||||| ||||||||||||||||| ||||||||    
T  20212975 tatgagtcagaatccgttgacaccaggtgtcaacgaattcgttgacacc 20213023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 48507042 - 48507070
Alignment:
Q  241 ggtgtcaacgaattcattgacacctggtg 269  Q
    |||||||||||||||||||||||||||||    
T  48507042 ggtgtcaacgaattcattgacacctggtg 48507070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 48648198 - 48648246
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| |||||||| |||||| |||||||||||| |||| ||||||||    
T  48648198 tatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacacc 48648246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 15305298 - 15305250
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| |||||||||||||||||||||||||| |||||| ||||||||    
T  15305298 tatgagtcaggatccattgacatcaggtgtcaatgaattcgttgacacc 15305250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 23901152 - 23901105
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacac 263  Q
    ||||||| |||||||||||||| ||||||||||||||||| |||||||    
T  23901152 tatgagataggatccattgacaccaggtgtcaacgaattcgttgacac 23901105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 13785651 - 13785603
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||||||||||| |||||| |||||||||||| |||| ||||||||    
T  13785651 tatgagacaggatccgttgacaccaggtgtcaacggattcgttgacacc 13785603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 19068453 - 19068405
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||||||||||| |||||| |||||||||||| |||| ||||||||    
T  19068453 tatgagacaggatccgttgacaccaggtgtcaacgtattcgttgacacc 19068405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 30661513 - 30661465
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||||||||||| |||||| |||||||||||| |||| ||||||||    
T  30661513 tatgagacaggatccgttgacaccaggtgtcaacggattcgttgacacc 30661465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 1417603 - 1417650
Alignment:
Q  217 atgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| ||||||| |||||| ||||||||||||||||| ||||||||    
T  1417603 atgagataggatccgttgacaccaggtgtcaacgaattcgttgacacc 1417650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 47719761 - 47719714
Alignment:
Q  217 atgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| |||||||||||||| |||||||||||| |||| ||||||||    
T  47719761 atgagataggatccattgacaccaggtgtcaacggattcgttgacacc 47719714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 264
Target Start/End: Complemental strand, 21497034 - 21496993
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||||| |||||| ||||||||||||||||| ||||||||    
T  21497034 caggatccgttgacaacaggtgtcaacgaattcgttgacacc 21496993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 37949602 - 37949647
Alignment:
Q  219 gagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||||||||| |||||| |||||||||||| |||| ||||||||    
T  37949602 gagacaggatccgttgacaccaggtgtcaacggattcgttgacacc 37949647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 38226030 - 38225985
Alignment:
Q  219 gagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||| ||||||| |||||| ||||||||||||||||| ||||||||    
T  38226030 gagataggatccgttgacaccaggtgtcaacgaattcgttgacacc 38225985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 45099139 - 45099180
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||||| |||||||||||||||||||||||| || |||||    
T  45099139 caggatccgttgacatcaggtgtcaacgaattcgttaacacc 45099180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 3029248 - 3029208
Alignment:
Q  224 aggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||| |||||| ||||||||||||||||| ||||||||    
T  3029248 aggatccgttgacaccaggtgtcaacgaattcgttgacacc 3029208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 14305084 - 14305132
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||| ||||||| ||||||  ||||||||||| |||||||||||||    
T  14305084 tatgagataggatccgttgacactaggtgtcaacggattcattgacacc 14305132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 24389666 - 24389626
Alignment:
Q  224 aggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||| |||||| |||||||||||| |||||||||||||    
T  24389666 aggatccgttgacaccaggtgtcaacggattcattgacacc 24389626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 25343249 - 25343277
Alignment:
Q  241 ggtgtcaacgaattcattgacacctggtg 269  Q
    |||||||||||||||||||||||||||||    
T  25343249 ggtgtcaacgaattcattgacacctggtg 25343277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 27948448 - 27948488
Alignment:
Q  224 aggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||| |||||| ||||||||||||||||| ||||||||    
T  27948448 aggatccgttgacaccaggtgtcaacgaattcgttgacacc 27948488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 40273602 - 40273574
Alignment:
Q  241 ggtgtcaacgaattcattgacacctggtg 269  Q
    |||||||||||||||||||||||||||||    
T  40273602 ggtgtcaacgaattcattgacacctggtg 40273574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 45099951 - 45099903
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| |||||||| |||||| |||||||||||| |||| ||||||||    
T  45099951 tatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacacc 45099903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 46428181 - 46428229
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| |||||||| |||||| |||||||||||| |||| ||||||||    
T  46428181 tatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacacc 46428229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 48669804 - 48669836
Alignment:
Q  226 gatccattgacatcaggtgtcaacgaattcatt 258  Q
    |||||||||||| ||||||||||||||||||||    
T  48669804 gatccattgacaccaggtgtcaacgaattcatt 48669836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 19323824 - 19323776
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||||||||||| |||||| ||||||||||||||||| ||||||||    
T  19323824 tatgagacaggatccgttgacaccaggtgtcaacgaattcgttgacacc 19323776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 3623177 - 3623217
Alignment:
Q  224 aggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||| |||||||||||||||||||||||| ||||||||    
T  3623177 aggatccgttgacatcaggtgtcaacgaattctttgacacc 3623217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 1366965 - 1367010
Alignment:
Q  219 gagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||||||||| ||||| ||||||||||||| |||| ||||||||    
T  1366965 gagacaggatccgttgacttcaggtgtcaacggattcgttgacacc 1367010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 2512432 - 2512480
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||||||||||| |||||| | | ||||||||||||| ||||||||    
T  2512432 tatgagacaggatccgttgacacctgatgtcaacgaattcgttgacacc 2512480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 8488471 - 8488511
Alignment:
Q  224 aggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||||||||||| |||||||||||| |||| ||||||||    
T  8488471 aggatccattgacaccaggtgtcaacggattcgttgacacc 8488511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 9442037 - 9441989
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||||||| |||| ||||||||||||||||||| |||| || |||||    
T  9442037 tatgagacagaatccgttgacatcaggtgtcaacggattcgttcacacc 9441989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 9442118 - 9442070
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||||||| |||| ||||||||||||||||||| |||| || |||||    
T  9442118 tatgagacagaatccgttgacatcaggtgtcaacggattcgttcacacc 9442070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 10171270 - 10171318
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| |||||||| |||||| |||||||||||| |||| ||||||||    
T  10171270 tatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacacc 10171318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 9540326 - 9540374
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||||||||||| |||||| ||||||||||||||||| ||||||||    
T  9540326 tatgagacaggatccgttgacaccaggtgtcaacgaattcgttgacacc 9540374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 38361062 - 38361110
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||||||||| | |||||||||||||||||||||||| ||||||||    
T  38361062 tatgagacaggatacgttgacatcaggtgtcaacgaattcgttgacacc 38361110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 24933834 - 24933879
Alignment:
Q  219 gagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||||||||| |||||| | ||||||||||||||||||||||||    
T  24933834 gagacaggatccgttgacacctggtgtcaacgaattcattgacacc 24933879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 9276387 - 9276339
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| |||||||| |||||| ||||||||||||||||| ||||||||    
T  9276387 tatgagtcaggatccgttgacaccaggtgtcaacgaattcgttgacacc 9276339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 18174719 - 18174679
Alignment:
Q  224 aggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||| |||||||||||||||||||||||| ||||||||    
T  18174719 aggatccgttgacatcaggtgtcaacgaattcgttgacacc 18174679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 18820427 - 18820475
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| | |||||||||||||||||||||||||| |||| ||||||||    
T  18820427 tatgagtcgggatccattgacatcaggtgtcaacggattcgttgacacc 18820475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 27177907 - 27177955
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||| ||||||| |||||| ||||||||||||||||| ||||||||    
T  27177907 tatgagataggatccgttgacaccaggtgtcaacgaattcgttgacacc 27177955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 29719441 - 29719489
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||||||||||| |||||| |||||||||||| |||| ||||||||    
T  29719441 tatgagacaggatccgttgacaccaggtgtcaacggattcgttgacacc 29719489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 1296381 - 1296422
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||||| |||||| ||||||||||||||||| ||||||||    
T  1296381 caggatccgttgacaccaggtgtcaacgaattcgttgacacc 1296422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 264
Target Start/End: Complemental strand, 18821281 - 18821240
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||||||||||| |||||||||||| ||| |||||||||    
T  18821281 caggatccattgacaccaggtgtcaacggattaattgacacc 18821240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 264
Target Start/End: Complemental strand, 22560618 - 22560577
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||||| ||||||||||||||||||| |||| ||||||||    
T  22560618 caggatccgttgacatcaggtgtcaacggattcgttgacacc 22560577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 29513201 - 29513156
Alignment:
Q  219 gagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||| |||||||||||||| |||||||||||| |||| ||||||||    
T  29513201 gagataggatccattgacaccaggtgtcaacggattcgttgacacc 29513156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 36237633 - 36237674
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||||| |||||| |||||||||||| |||||||||||||    
T  36237633 caggatccgttgacaccaggtgtcaacggattcattgacacc 36237674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 8541753 - 8541793
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaattcattgacac 263  Q
    |||||||| |||||||||||| ||||||||||| |||||||    
T  8541753 caggatccgttgacatcaggtctcaacgaattcgttgacac 8541793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 262
Target Start/End: Original strand, 8667431 - 8667467
Alignment:
Q  226 gatccattgacatcaggtgtcaacgaattcattgaca 262  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  8667431 gatcgattgacatcaggtgttaacgaattcattgaca 8667467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 11750260 - 11750300
Alignment:
Q  224 aggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||||||||||| |||||||||||| |||| ||||||||    
T  11750260 aggatccattgacaccaggtgtcaacggattcgttgacacc 11750300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 22301919 - 22301879
Alignment:
Q  224 aggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||| |||||| ||||||||||||||||| ||||||||    
T  22301919 aggatccgttgacaccaggtgtcaacgaattcgttgacacc 22301879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 24121347 - 24121303
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattga 260  Q
    |||||| ||||||||||||||| |||||||||||  |||||||||    
T  24121347 tatgagtcaggatccattgacaccaggtgtcaacagattcattga 24121303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 36238787 - 36238739
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||||  ||||||||||||| ||||| |||||| |||||||||||||    
T  36238787 tatgagatgggatccattgacaccaggtatcaacggattcattgacacc 36238739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 25468504 - 25468552
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| ||||||||||||||| |||||||||||| |||||||||||||    
T  25468504 tatgagtcaggatccattgacaccaggtgtcaacggattcattgacacc 25468552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 19172633 - 19172585
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| ||||||||||||||| |||||||||||| |||| ||||||||    
T  19172633 tatgagtcaggatccattgacaccaggtgtcaacggattcgttgacacc 19172585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 24991964 - 24992012
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||| |||||||||||||| |||||||||||| |||| ||||||||    
T  24991964 tatgagataggatccattgacaccaggtgtcaacggattcgttgacacc 24992012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 27256770 - 27256722
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||||||||||| |||||| |||||||||||| |||| ||||||||    
T  27256770 tatgagacaggatccgttgacaccaggtgtcaacgtattcgttgacacc 27256722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 264
Target Start/End: Complemental strand, 34309286 - 34309240
Alignment:
Q  218 tgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||||||||| |||||| |||||||||||| |||| ||||||||    
T  34309286 tgagacaggatccgttgacaccaggtgtcaacggattcgttgacacc 34309240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 46391924 - 46391878
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgaca 262  Q
    ||||||||||||||| |||||| |||||||||||| |||| ||||||    
T  46391924 tatgagacaggatccgttgacaccaggtgtcaacggattcgttgaca 46391878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 17171928 - 17171973
Alignment:
Q  219 gagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||| ||||||| |||||| ||||||||||||||||| ||||||||    
T  17171928 gagataggatccgttgacaccaggtgtcaacgaattcgttgacacc 17171973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 34308470 - 34308515
Alignment:
Q  219 gagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||||||||| |||||| |||||||||||| |||| ||||||||    
T  34308470 gagacaggatccgttgacaccaggtgtcaacgtattcgttgacacc 34308515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 169677 - 169637
Alignment:
Q  224 aggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||| |||||| |||||||||||||||| |||||||||    
T  169677 aggatccgttgacaccaggtgtcaacgaatttattgacacc 169637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 7559257 - 7559209
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||||||||||| |||||| |||||||||||| || | ||||||||    
T  7559257 tatgagacaggatccgttgacaccaggtgtcaacggatccgttgacacc 7559209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 8987784 - 8987832
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| |||||||  ||||||||||||||||||| |||| ||||||||    
T  8987784 tatgagtcaggatcggttgacatcaggtgtcaacggattcgttgacacc 8987832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 13262835 - 13262875
Alignment:
Q  224 aggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||| |||||| ||||||||||||||||| ||||||||    
T  13262835 aggatccgttgacaccaggtgtcaacgaattcgttgacacc 13262875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 37853193 - 37853145
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| |||||||| || |||||||||||||||| |||| ||||||||    
T  37853193 tatgagtcaggatccgttaacatcaggtgtcaacggattcgttgacacc 37853145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 40022161 - 40022193
Alignment:
Q  233 tgacatcaggtgtcaacgaattcattgacacct 265  Q
    ||||||||||||||||||||||| |||||||||    
T  40022161 tgacatcaggtgtcaacgaattcgttgacacct 40022193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 47967864 - 47967904
Alignment:
Q  224 aggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||||||||||| |||||||||||| |||| ||||||||    
T  47967864 aggatccattgacaccaggtgtcaacggattcgttgacacc 47967904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 17725708 - 17725663
Alignment:
Q  219 gagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||||||||| |||||| ||||||||||||||||| ||||||||    
T  17725708 gagacaggatccgttgacagcaggtgtcaacgaattcgttgacacc 17725663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 3165179 - 3165131
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| |||||||| ||||||||||||||||||| |||| ||||||||    
T  3165179 tatgagtcaggatccgttgacatcaggtgtcaacggattcgttgacacc 3165131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 31642144 - 31642096
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| ||||||||||||||| ||| ||||||||||||| ||||||||    
T  31642144 tatgagtcaggatccattgacaccagatgtcaacgaattcgttgacacc 31642096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 39779898 - 39779850
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| ||||||||||||||| ||||||||||||||||| || |||||    
T  39779898 tatgagtcaggatccattgacaccaggtgtcaacgaattcgttaacacc 39779850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 27441461 - 27441507
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgaca 262  Q
    ||||||| ||||||| |||||| ||||||||||||||||| ||||||    
T  27441461 tatgagataggatccgttgacaccaggtgtcaacgaattcgttgaca 27441507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 37064818 - 37064859
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||||  |||||| ||||||||||||||||||||||||||    
T  37064818 caggatctgttgacaccaggtgtcaacgaattcattgacacc 37064859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 39778920 - 39778961
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||||||||||| ||||||||||||||||| || |||||    
T  39778920 caggatccattgacaccaggtgtcaacgaattcgttaacacc 39778961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 45929 - 45957
Alignment:
Q  241 ggtgtcaacgaattcattgacacctggtg 269  Q
    |||||||||||||||||||||||||||||    
T  45929 ggtgtcaacgaattcattgacacctggtg 45957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 9197090 - 9197138
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| ||| |||| |||||| ||||||||||||||||| ||||||||    
T  9197090 tatgagtcagaatccgttgacaccaggtgtcaacgaattcgttgacacc 9197138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 41974635 - 41974683
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| |||||||| |||||| |||||||||||| |||| ||||||||    
T  41974635 tatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacacc 41974683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 10554516 - 10554569
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacctggtg 269  Q
    ||||||||||||||| |||||| |||||||||||| |||| |||||||| ||||    
T  10554516 tatgagacaggatccgttgacaccaggtgtcaacggattcgttgacaccaggtg 10554569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 1281830 - 1281878
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||| |||||||||||||| |||||||||||| |||| ||||||||    
T  1281830 tatgagataggatccattgacaccaggtgtcaacggattcgttgacacc 1281878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 17071226 - 17071266
Alignment:
Q  224 aggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||| |||||||||||||||||||||||| ||||||||    
T  17071226 aggatccgttgacatcaggtgtcaacgaattcgttgacacc 17071266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 19360533 - 19360485
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| |||||||| |||||| ||||||||||||||||| ||||||||    
T  19360533 tatgagtcaggatccgttgacaccaggtgtcaacgaattcgttgacacc 19360485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 34600263 - 34600303
Alignment:
Q  224 aggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||| |||||||||||||||||||||||| ||||||||    
T  34600263 aggatccgttgacatcaggtgtcaacgaattcgttgacacc 34600303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 1554137 - 1554092
Alignment:
Q  219 gagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||| ||||||| |||||| ||||||||||||||||| ||||||||    
T  1554137 gagataggatccgttgacaccaggtgtcaacgaattcgttgacacc 1554092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 6476845 - 6476800
Alignment:
Q  219 gagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||||||||| |||||| |||||||||||| |||| ||||||||    
T  6476845 gagacaggatccgttgacaccaggtgtcaacggattcgttgacacc 6476800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 14478922 - 14478963
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||||| ||||||||||||||||||| |||| ||||||||    
T  14478922 caggatccgttgacatcaggtgtcaacggattcgttgacacc 14478963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 29087926 - 29087967
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||||| |||||| |||||||||||| |||||||||||||    
T  29087926 caggatccgttgacaccaggtgtcaacggattcattgacacc 29087967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 235594 - 235634
Alignment:
Q  224 aggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||||||||||| |||||||||||| |||| ||||||||    
T  235594 aggatccattgacaccaggtgtcaacggattcgttgacacc 235634  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 237878 - 237830
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| |||||||| |||||| |||||||||||| |||| ||||||||    
T  237878 tatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacacc 237830  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 2313949 - 2313989
Alignment:
Q  224 aggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||||||||||| |||||||||||  |||||||||||||    
T  2313949 aggatccattgacaccaggtgtcaacagattcattgacacc 2313989  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 7632089 - 7632137
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||| ||||||| |||||| |||||||||||| |||| ||||||||    
T  7632089 tatgagataggatccgttgacaccaggtgtcaacggattcgttgacacc 7632137  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 19128764 - 19128812
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| |||||||| |||||| |||||||||||| |||| ||||||||    
T  19128764 tatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacacc 19128812  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 19359698 - 19359746
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| |||||||| |||||| |||||||||||| |||| ||||||||    
T  19359698 tatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacacc 19359746  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 22799769 - 22799797
Alignment:
Q  241 ggtgtcaacgaattcattgacacctggtg 269  Q
    |||||||||||||||||||||||||||||    
T  22799769 ggtgtcaacgaattcattgacacctggtg 22799797  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 27364544 - 27364496
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    ||||||||||||||| |||||| |||||||||| | |||| ||||||||    
T  27364544 tatgagacaggatccgttgacaccaggtgtcaatggattcgttgacacc 27364496  T

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Target: scaffold0085 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 22125 - 22080
Alignment:
Q  219 gagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||||||||| |||||| |||||||||||| |||| ||||||||    
T  22125 gagacaggatccgttgacaccaggtgtcaacggattcgttgacacc 22080  T

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Target: scaffold2007 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold2007
Description:

Target: scaffold2007; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 745 - 793
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| ||||||||||||||| ||||| |||||| |||| ||||||||    
T  745 tatgagtcaggatccattgacaccaggtttcaacggattcgttgacacc 793  T

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Target: scaffold0418 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 6942 - 6894
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| |||||||| |||||| ||||||||||| ||||| ||||||||    
T  6942 tatgagtcaggatccgttgacaccaggtgtcaacaaattcgttgacacc 6894  T

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Target: scaffold0176 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 26586 - 26634
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaattcattgacacc 264  Q
    |||||| |||||||| |||||| |||||||||||| |||| ||||||||    
T  26586 tatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacacc 26634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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