View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_low_48 (Length: 342)
Name: NF16638_low_48
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 8 - 324
Target Start/End: Complemental strand, 43058293 - 43057967
Alignment:
| Q |
8 |
tgcaaaagattcaaagtttacgagaatctgattccacaataataa---atatctctggca--------ccctcttcaaatagttgaaagtgcagctatta |
96 |
Q |
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| T |
43058293 |
tgcaaaagattcaaagtttacgagaatctgattccacaataataataaatatctttggcctggtgtagccctcttcaaatagttgaaagtgccgctaata |
43058194 |
T |
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| Q |
97 |
aattagaatctctaccaagagatccnnnnnnngccttgaatacaaatttctctttaatttctcaagagacctccaaaacttgcattactatgatttccaa |
196 |
Q |
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| T |
43058193 |
aattagaatctctaccaagagatccaaaaaa-gccttgaatacaaatttctctttaatttctcaaaagacctccaaaacttgcattactatgatttccaa |
43058095 |
T |
|
| Q |
197 |
aagaagagtcatctatattaattttataatagccttcagggtggattccgaccaaccttatcagtcgcgtgatccttactatcatgcatcacaaccaact |
296 |
Q |
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|||||||||| |||||||||||||||| ||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43058094 |
aagaagagtcgtctatattaattttattatagccttcagggcggattccaaccaacgttatcagtcgcgtgatccttactatcatgcatcacggccaact |
43057995 |
T |
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| Q |
297 |
aacaaaatgtcgcaggttttcagtagtt |
324 |
Q |
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| T |
43057994 |
aacaaaatgtcgcaggttttcagtagtt |
43057967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 236
Target Start/End: Complemental strand, 841528 - 841446
Alignment:
| Q |
154 |
tttctcaagagacctccaaaacttgcattactatgatttccaaaagaagagtcatctatattaattttataatagccttcagg |
236 |
Q |
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| T |
841528 |
tttctcaagagacctccaaaacctgcatcaccgggatttcaaaaagaagagttgtctacattgatcttaatatagccttcagg |
841446 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 35822927 - 35822976
Alignment:
| Q |
154 |
tttctcaagagacctccaaaacttgcattactatgatttccaaaagaaga |
203 |
Q |
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| T |
35822927 |
tttctcaaaagacctccaaaacctgcattaccaggattaccaaaagaaga |
35822976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 12238665 - 12238616
Alignment:
| Q |
154 |
tttctcaagagacctccaaaacttgcattactatgatttccaaaagaaga |
203 |
Q |
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| T |
12238665 |
tttctcaagagacctccaaaacctgcatcacagggatttccaaaagaaga |
12238616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 18095960 - 18095911
Alignment:
| Q |
154 |
tttctcaagagacctccaaaacttgcattactatgatttccaaaagaaga |
203 |
Q |
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|||||||| ||||||||||||| |||||||| | |||| ||||||||||| |
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| T |
18095960 |
tttctcaaaagacctccaaaacctgcattaccaggattaccaaaagaaga |
18095911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 1259592 - 1259641
Alignment:
| Q |
154 |
tttctcaagagacctccaaaacttgcattactatgatttccaaaagaaga |
203 |
Q |
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|||||||| ||||||||||||| |||||||| | |||| ||||||||||| |
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| T |
1259592 |
tttctcaaaagacctccaaaacctgcattaccaggattaccaaaagaaga |
1259641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 234
Target Start/End: Original strand, 29603018 - 29603098
Alignment:
| Q |
154 |
tttctcaagagacctccaaaacttgcattactatgatttccaaaagaagagtcatctatattaattttataatagccttca |
234 |
Q |
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|||||||| ||||||||||||| |||||||| ||||| |||||||||| |||||| ||| || ||| |||||||||| |
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| T |
29603018 |
tttctcaaaagacctccaaaacatgcattaccgggattttcaaaagaagaaccatctacattgatcttaatatagccttca |
29603098 |
T |
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