View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_low_50 (Length: 335)
Name: NF16638_low_50
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 320
Target Start/End: Original strand, 4095160 - 4095469
Alignment:
| Q |
11 |
atcatcagattcttttgcttctattatttcaattcagataaccctttttccgaaaaatggtttttctattggaataagcacacaccatgctgttcttgat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4095160 |
atcatcagattcttttgcttctattatttcaattcagataaccctttttccgaaaaatggtttttccattggaataagcacacaccatgctgttcttgat |
4095259 |
T |
|
| Q |
111 |
ggaaaatcttcaaccatgttcgtcaaagcatggtcttctatatgtaaatctcttgaagaagaaacacaatcaccaaatttagagcctttattagaaccat |
210 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4095260 |
ggaaaatcttcaaccatgttcatcaaagcatggtcttctatatgtaaatctcttgaagaagaaacacaatcactaaatttagagcctttattagaaccat |
4095359 |
T |
|
| Q |
211 |
ttttggaaaggggagtcatcaaagatccaaatgattttgagaattcgttcattaatacttggaacagaatctcatcacattttgataagagcagtgtgaa |
310 |
Q |
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|||||||||||| | | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4095360 |
ttttggaaagggaacttattgaagatccaaatgattttgagaattcgttcattaatacttggaacagaatctcatcacattttgataagagcagtgtgaa |
4095459 |
T |
|
| Q |
311 |
aagcataaag |
320 |
Q |
| |
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|||||||||| |
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| T |
4095460 |
aagcataaag |
4095469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 11 - 131
Target Start/End: Original strand, 4189104 - 4189224
Alignment:
| Q |
11 |
atcatcagattcttttgcttctattatttcaattcagataaccctttttccgaaaaatggtttttctattggaataagcacacaccatgctgttcttgat |
110 |
Q |
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|||| ||||||| | |||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
4189104 |
atcaacagattcatctgcttctattatttcaattcagataaccctttttccaaaaagtggtttttccattggaataagcacacaccatgctggtcttgat |
4189203 |
T |
|
| Q |
111 |
ggaaaatcttcaaccatgttc |
131 |
Q |
| |
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|||||||| |||||||||||| |
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| T |
4189204 |
ggaaaatcatcaaccatgttc |
4189224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 4192249 - 4192372
Alignment:
| Q |
16 |
cagattcttttgcttctattatttcaattcagataaccctttttccgaaaaatggtttttctattggaataagcacacaccatgctgttcttgatggaaa |
115 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||| ||| ||| ||||||||||||| ||||||||||||||| |
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| T |
4192249 |
cagattcttttgcttctattatttcagttcagataaccctttttcaaaaaagtggtttttccattagaactagcacacaccatggtgttcttgatggaaa |
4192348 |
T |
|
| Q |
116 |
atcttcaaccatgttcgtcaaagc |
139 |
Q |
| |
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|||||||||||||||| ||||||| |
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| T |
4192349 |
atcttcaaccatgttcatcaaagc |
4192372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 4196003 - 4196124
Alignment:
| Q |
18 |
gattcttttgcttctattatttcaattcagataaccctttttccgaaaaatggtttttctattggaataagcacacaccatgctgttcttgatggaaaat |
117 |
Q |
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|
|||||||||||||||||||| ||||||||||||||| |||||||| ||| ||||||||| |||||||||||||| ||||||||| |||| |||||||||| |
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| T |
4196003 |
gattcttttgcttctattatctcaattcagataaccttttttccggaaagtggtttttccattggaataagcactcaccatgctattctagatggaaaat |
4196102 |
T |
|
| Q |
118 |
cttcaaccatgttcgtcaaagc |
139 |
Q |
| |
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| |||| ||||||| ||||||| |
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| T |
4196103 |
cctcaatcatgttcatcaaagc |
4196124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 4233750 - 4233870
Alignment:
| Q |
19 |
attcttttgcttctattatttcaattcagataaccctttttccgaaaaatggtttttctattggaataagcacacaccatgctgttcttgatggaaaatc |
118 |
Q |
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|
||||||||||||||||||| ||| ||||||||||||||||||| ||| ||||||||| |||||||||||||| || ||||||| ||||||||||||||| |
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| T |
4233750 |
attcttttgcttctattatctcagttcagataaccctttttccagaaagtggtttttccattggaataagcactcatcatgctgctcttgatggaaaatc |
4233849 |
T |
|
| Q |
119 |
ttcaaccatgttcgtcaaagc |
139 |
Q |
| |
|
|||||||||||| ||||||| |
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| T |
4233850 |
ctcaaccatgttcatcaaagc |
4233870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 4250773 - 4250901
Alignment:
| Q |
11 |
atcatcagattcttttgcttctattatttcaattcagataaccctttttccgaaaaatggtttttctattggaataagcacacaccatgctgttcttgat |
110 |
Q |
| |
|
||||||||||||||||||||||||||| ||| | || || |||||||| || || | ||||||| || ||||| ||||| || ||||||||||||||| |
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| T |
4250773 |
atcatcagattcttttgcttctattatgtcactccaaatcacccttttcccaaatagtggttttagcatcggaatcagcactcatcatgctgttcttgat |
4250872 |
T |
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| Q |
111 |
ggaaaatcttcaaccatgttcgtcaaagc |
139 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
4250873 |
ggaaaatcttcaaccatgttcgtcaaagc |
4250901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 4241538 - 4241638
Alignment:
| Q |
19 |
attcttttgcttctattatttcaattcagataaccctttttccgaaaaatggtttttctattggaataagcacacaccatgctgttcttgatggaaaatc |
118 |
Q |
| |
|
||||||||||||||||||| ||| | || ||||| |||||||| ||| ||||||||| |||||||||||||| || ||||||||||||||||||||||| |
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| T |
4241538 |
attcttttgcttctattatctcactccaaataactctttttccaaaacgtggtttttccattggaataagcactcatcatgctgttcttgatggaaaatc |
4241637 |
T |
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| Q |
119 |
t |
119 |
Q |
| |
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| |
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|
| T |
4241638 |
t |
4241638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 67 - 147
Target Start/End: Complemental strand, 4978497 - 4978417
Alignment:
| Q |
67 |
atggtttttctattggaataagcacacaccatgctgttcttgatggaaaatcttcaaccatgttcgtcaaagcatggtctt |
147 |
Q |
| |
|
|||| |||| |||||| |||| |||||||||||| | | |||||||||||||||||||| |||| | ||||||||||||| |
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| T |
4978497 |
atggattttgtattggtataaccacacaccatgcagctgttgatggaaaatcttcaaccttgtttatgaaagcatggtctt |
4978417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 5525136 - 5525205
Alignment:
| Q |
57 |
tttccgaaaaatggtttttctattggaataagcacacaccatgctgttcttgatggaaaatcttcaacca |
126 |
Q |
| |
|
||||| || |||||||||| |||||||||| ||||||||||||| | | ||||||||||||||||||| |
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| T |
5525136 |
tttccaaacaatggtttttgcattggaataacaacacaccatgctgctttagatggaaaatcttcaacca |
5525205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 147
Target Start/End: Complemental strand, 4995256 - 4995176
Alignment:
| Q |
67 |
atggtttttctattggaataagcacacaccatgctgttcttgatggaaaatcttcaaccatgttcgtcaaagcatggtctt |
147 |
Q |
| |
|
|||| |||| |||||| |||| |||||||||||| | | |||||||||||||||||||| |||| | ||||| ||||||| |
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|
| T |
4995256 |
atggattttgtattggtataaccacacaccatgcagctgttgatggaaaatcttcaaccttgtttatgaaagcttggtctt |
4995176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 4982614 - 4982557
Alignment:
| Q |
67 |
atggtttttctattggaataagcacacaccatgctgttcttgatggaaaatcttcaac |
124 |
Q |
| |
|
|||| |||| |||||| |||| |||||||||||| | | ||||||||||||||||||| |
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|
| T |
4982614 |
atggattttgtattggtataaccacacaccatgcagctgttgatggaaaatcttcaac |
4982557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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