View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16638_low_52 (Length: 313)

Name: NF16638_low_52
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16638_low_52
NF16638_low_52
[»] chr1 (3 HSPs)
chr1 (1-249)||(23987867-23988115)
chr1 (13-249)||(13443552-13443786)
chr1 (1-171)||(28660299-28660469)
[»] chr2 (5 HSPs)
chr2 (38-248)||(33054024-33054235)
chr2 (1-220)||(33051866-33052085)
chr2 (1-249)||(27955729-27955977)
chr2 (1-183)||(31634440-31634622)
chr2 (96-185)||(40749790-40749879)
[»] chr6 (4 HSPs)
chr6 (1-237)||(8048515-8048752)
chr6 (85-229)||(24442701-24442845)
chr6 (1-121)||(14238858-14238978)
chr6 (7-228)||(18717773-18717993)
[»] chr8 (6 HSPs)
chr8 (1-231)||(18180262-18180491)
chr8 (1-230)||(26375187-26375416)
chr8 (7-249)||(42890665-42890907)
chr8 (7-231)||(42891250-42891474)
chr8 (21-228)||(5646638-5646845)
chr8 (7-246)||(23570766-23571005)
[»] chr5 (1 HSPs)
chr5 (1-231)||(19496854-19497084)
[»] chr7 (5 HSPs)
chr7 (5-189)||(24840515-24840699)
chr7 (42-153)||(1786200-1786311)
chr7 (1-122)||(1368319-1368437)
chr7 (134-249)||(4300729-4300844)
chr7 (163-249)||(1366924-1367010)
[»] scaffold0240 (1 HSPs)
scaffold0240 (21-246)||(16308-16533)
[»] chr3 (1 HSPs)
chr3 (7-129)||(43306357-43306479)
[»] chr4 (7 HSPs)
chr4 (5-76)||(22923526-22923597)
chr4 (5-76)||(22928179-22928250)
chr4 (5-76)||(22984458-22984529)
chr4 (5-76)||(22998046-22998117)
chr4 (37-77)||(22721471-22721511)
chr4 (186-229)||(22691515-22691558)
chr4 (45-82)||(22768374-22768411)


Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 23988115 - 23987867
Alignment:
Q  1 cctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgtaacaaaacgtacaacgatatatcgaattagagattttaaacttgt 100  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23988115 cctgccattctggaagcatgtctcaaaaggtcggtcaaggagtaatctttgttgtaacaaaacgtacaacgatatatcgaattagagattttaaacttgt 23988016  T
Q  101 agtaatcatccttcaacttgttgtaatatatacgctcataatattccaaatcagattcacaggtatattctgattttcggtacatatcaatagtatgatt 200  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23988015 agtaatcatccttcaacttgttgtaatatatacactcatagtattccagatcagattcataggtatattctgattttcggtacatatcaatagtatgatt 23987916  T
Q  201 gttattaagaaccctaataaccagaattggtcatccttctctgttcgga 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23987915 gttattaagaaccctaataaccagaattggtcatccttctctgttcgga 23987867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 13443552 - 13443786
Alignment:
Q  13 gaagcatgtctcaaaaggtcggttaaggagtaatctttgttgtaacaaaacgtacaacgatatatcgaattagagattttaaacttgtagtaatcatcct 112  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||| | ||||||||||||||||| |||||||| ||| |||||||||||||||     
T  13443552 gaagcatgtctcaaaaggtcgg--aaggagtaatctttgttgtaacaaaatggacaacgatatatcgaatcagagatttcaaatttgtagtaatcatccg 13443649  T
Q  113 tcaacttgttgtaatatatacgctcataatattccaaatcagattcacaggtatattctgattttcggtacatatcaatagtatgattgttattaagaac 212  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||  |  || ||||| ||||||||||||| || ||| |||| |  ||||||||  |||    
T  13443650 tcaacctgttgtaatatctacgctcataatattccaaatcagatgaattggcatattttgattttcggtacgtaacaacagtagggatgttattacaaac 13443749  T
Q  213 cctaataaccagaattggtcatccttctctgttcgga 249  Q
    ||||||| |  ||||||||  |||| ||| |||||||    
T  13443750 cctaatagctggaattggttctcctcctccgttcgga 13443786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 28660299 - 28660469
Alignment:
Q  1 cctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgtaacaaaacgtacaacgatatatcgaattagagattttaaacttgt 100  Q
    ||||||| |||  |||||||| ||||||||| ||| |||||||||| ||||||| ||||||| | ||||||||||||| ||| |||||||||||||||||    
T  28660299 cctgccaatctgaaagcatgtttcaaaaggttggtcaaggagtaatttttgttgcaacaaaatggacaacgatatatcaaatcagagattttaaacttgt 28660398  T
Q  101 agtaatcatccttcaacttgttgtaatatatacgctcataatattccaaatcagattcacaggtatattct 171  Q
    |||||| |||||||| ||| ||||||||| |||||||||| ||||||| ||||||||||||||||| ||||    
T  28660399 agtaattatccttcagctttttgtaatatctacgctcatagtattccatatcagattcacaggtatgttct 28660469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 38 - 248
Target Start/End: Original strand, 33054024 - 33054235
Alignment:
Q  38 aggagtaatctttgttgtaacaaaacgtacaacgatatatcgaattagagattttaaacttgtagtaatcatccttcaacttgttgtaatatatacgctc 137  Q
    |||||||||||||||| || ||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  33054024 aggagtaatctttgttatagcaaaacggacaacgatatatcgaatcagagattttaaactcgtagtaatcatccttcaacttgttgtaatatttacgctc 33054123  T
Q  138 ataatattcc-aaatcagattcacaggtatattctgattttcggtacatatcaatagtatgattgttattaagaaccctaataaccagaattggtcatcc 236  Q
    ||| |||||| |||| ||||||||  |||| |||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33054124 atagtattccaaaattagattcacgagtatgttctgattttcggtacgtaacaatagtatgattgttattacgaaccctaataaccagaattggtcatcc 33054223  T
Q  237 ttctctgttcgg 248  Q
    | ||||||||||    
T  33054224 tcctctgttcgg 33054235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 33052085 - 33051866
Alignment:
Q  1 cctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgtaacaaaacgtacaacgatatatcgaattagagattttaaacttgt 100  Q
    ||||||||||| ||||||||||||||||||| ||| |||||||||||||||||| ||||||| | | ||||||||||||||| |||||||||||||||||    
T  33052085 cctgccattctggaagcatgtctcaaaaggttggtcaaggagtaatctttgttgcaacaaaatggataacgatatatcgaatcagagattttaaacttgt 33051986  T
Q  101 agtaatcatccttcaacttgttgtaatatatacgctcataatattccaaatcagattcacaggtatattctgattttcggtacatatcaatagtatgatt 200  Q
    |||||||| | |||||||||||||||||| |||||||||| ||||||||||||||| ||| | ||| |||||||||||||||| || |||||||||| ||    
T  33051985 agtaatcaacattcaacttgttgtaatatctacgctcatagtattccaaatcagatccacggatatgttctgattttcggtacgtaacaatagtatggtt 33051886  T
Q  201 gttattaagaaccctaataa 220  Q
    ||||||| |||||| |||||    
T  33051885 gttattacgaaccccaataa 33051866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 27955729 - 27955977
Alignment:
Q  1 cctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgtaacaaaacgtacaacgatatatcgaattagagattttaaacttgt 100  Q
    ||||| |||||  ||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||  ||||||| ||| ||||    
T  27955729 cctgcaattctgaaagcatgtctcaaaaggccggtcaaggagtaatctttgttgtaacaaaacggacaacgatatatcgaatcggagatttcaaatttgt 27955828  T
Q  101 agtaatcatccttcaacttgttgtaatatatacgctcataatattccaaatcagattcacaggtatattctgattttcggtacatatcaatagtatgatt 200  Q
    | ||||||||||||||| |  |||||||| |||||||||| ||||||||||||||||||  | |||||| ||||||||||||| || |||||||| |  |    
T  27955829 aataatcatccttcaaccttgtgtaatatctacgctcatagtattccaaatcagattcattgctatattttgattttcggtacgtaacaatagtagggat 27955928  T
Q  201 gttattaagaaccctaataaccagaattggtcatccttctctgttcgga 249  Q
    |||||||  ||||||||||||  ||||||||  |||| |||||||||||    
T  27955929 gttattacaaaccctaataactggaattggttctcctcctctgttcgga 27955977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 31634622 - 31634440
Alignment:
Q  1 cctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgtaacaaaacgtacaacgatatatcgaattagagattttaaacttgt 100  Q
    ||||| ||||| ||||||||||||||||||||||  |||||||||||||||||||||||||| | ||||||||||||||||| |||||||| ||| ||||    
T  31634622 cctgcaattctggaagcatgtctcaaaaggtcggacaaggagtaatctttgttgtaacaaaatggacaacgatatatcgaatcagagatttcaaatttgt 31634523  T
Q  101 agtaatcatccttcaacttgttgtaatatatacgctcataatattccaaatcagattcacaggtatattctgattttcggtac 183  Q
    |||||||||||||||| ||  |||||||| |||||||||| ||||||||||| ||||||  | | |||| |||||||||||||    
T  31634522 agtaatcatccttcaattttgtgtaatatctacgctcatagtattccaaatctgattcattgctgtattttgattttcggtac 31634440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 185
Target Start/End: Complemental strand, 40749879 - 40749790
Alignment:
Q  96 cttgtagtaatcatccttcaacttgttgtaatatatacgctcataatattccaaatcagattcacaggtatattctgattttcggtacat 185  Q
    ||||||||||||||| ||||| |  ||||||||| | ||||  || || |||||||||||||||   || | ||||||||||||||||||    
T  40749879 cttgtagtaatcatctttcaaatctttgtaatatctgcgcttgtagtactccaaatcagattcatgagtctgttctgattttcggtacat 40749790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 138; Significance: 4e-72; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 8048515 - 8048752
Alignment:
Q  1 cctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgtaacaaaacgtacaacgatatatcgaattagagattttaaacttgt 100  Q
    ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| | || ||||||||||||||||    
T  8048515 cctgctattctggaagcatgtctcaaaaggtcggtcaaggagtaatctttgttgtaacaaaacgaacaacgatatatcaatttggagattttaaacttgt 8048614  T
Q  101 agtaatcatccttcaacttgttgtaatatatacgctcataatattccaaatcagattcacaggtatattctgattttcggtacatatcaatagtatgatt 200  Q
    |||||||||||  ||| |||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||| ||||| || |||||||||| ||    
T  8048615 agtaatcatccggcaatttgttgtaatatctacgctcatagtattccaaatcagattcacaggtatgttctgatttttggtacgtaacaatagtatgttt 8048714  T
Q  201 gttattaagaa-ccctaataaccagaattggtcatcct 237  Q
     |||||| |||  |||||||| | ||||||||| ||||    
T  8048715 tttattacgaaggcctaataatcggaattggtcctcct 8048752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 85 - 229
Target Start/End: Original strand, 24442701 - 24442845
Alignment:
Q  85 gagattttaaacttgtagtaatcatccttcaacttgttgtaatatatacgctcataatattccaaatcagattcacaggtatattctgattttcggtaca 184  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||  ||||||||||||||||||||||     
T  24442701 gagattttaaacttgtagtaatcatccttcaacatgttgtaatatctacgctcatagtattccaaatcagattcatgggtatattctgattttcggtacg 24442800  T
Q  185 tatcaatagtatgattgttattaagaaccctaataaccagaattg 229  Q
    || |||||||||| ||||||| | |||||||||||||| ||||||    
T  24442801 taacaatagtatggttgttataatgaaccctaataaccggaattg 24442845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 14238978 - 14238858
Alignment:
Q  1 cctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgtaacaaaacgtacaacgatatatcgaattagagattttaaacttgt 100  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |  ||||| ||||||||||||||||| |||||||||||||| ||    
T  14238978 cctgccattctagaagcatgtctcaaaaggtcggtcaaggagtaatctttgttgtcaagaaacggacaacgatatatcgaatcagagattttaaactagt 14238879  T
Q  101 agtaatcatccttcaacttgt 121  Q
    |||||||||||||||||||||    
T  14238878 agtaatcatccttcaacttgt 14238858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 18717773 - 18717993
Alignment:
Q  7 attctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgtaacaaaacgtacaacgatatatcgaattagagattttaaacttgtagtaat 106  Q
    ||||| |||||| |||| |||||| |||| || ||||||||||||||||||||||||| |||||||||||| ||||  ||||||| ||| |||||| |||    
T  18717773 attctggaagcacgtctaaaaagg-cggtcaaagagtaatctttgttgtaacaaaacggacaacgatatatggaatcggagatttcaaatttgtagaaat 18717871  T
Q  107 catccttcaacttgttgtaatatatacgctcataatattccaaatcagattcacaggtatattctgattttcggtacatatcaatagtatgattgttatt 206  Q
    ||||||||||||   |||| ||| || ||||||| ||||||||||||||| || |||||| || ||||||||||||| || |||||||  |  |||||||    
T  18717872 catccttcaactatgtgtactatctatgctcatagtattccaaatcagatacataggtatgttttgattttcggtacgtaacaatagttgggatgttatt 18717971  T
Q  207 aagaaccctaataaccagaatt 228  Q
    |  ||||||||||||| |||||    
T  18717972 acaaaccctaataaccggaatt 18717993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 18180262 - 18180491
Alignment:
Q  1 cctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgtaacaaaacgtacaacgatatatcgaattagagattttaaacttgt 100  Q
    ||||||||||| |||||||||||||||||||| || |||||||||| ||||||||||||||||| |||||||||| || |||  ||||||||||||| ||    
T  18180262 cctgccattctggaagcatgtctcaaaaggtcagtaaaggagtaatatttgttgtaacaaaacggacaacgatatttcaaatcggagattttaaactcgt 18180361  T
Q  101 agtaatcatccttcaacttgttgtaatatatacgctcataatattccaaatcagattcacaggtatattctgattttcggtacatatcaatagtatgatt 200  Q
    ||||||||||||||||||||||||||||| || ||||| | ||||||||||||||||||| ||||| |||||||||||| |||||| |||||||| | ||    
T  18180362 agtaatcatccttcaacttgttgtaatatctatgctcacagtattccaaatcagattcac-ggtatgttctgattttcgctacataacaatagtagggtt 18180460  T
Q  201 gttattaagaaccctaataaccagaattggt 231  Q
    ||||||| ||||||||||||||  |||||||    
T  18180461 gttattacgaaccctaataaccgaaattggt 18180491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 26375416 - 26375187
Alignment:
Q  1 cctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgtaacaaaacgtacaacgatatatcgaattagagattttaaacttgt 100  Q
    |||||||||||  ||||||||||||||||||| || ||||||||||||||| |||||||||||| |||| ||||| | |||| ||||||||||||||  |    
T  26375416 cctgccattctataagcatgtctcaaaaggtcagtcaaggagtaatctttggtgtaacaaaacggacaatgatattttgaatcagagattttaaactcat 26375317  T
Q  101 agtaatcatccttcaacttgttgtaatatatacgctcataatattccaaatcagattcacaggtatattctgattttcggtacatatcaatagtatgatt 200  Q
    ||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||| | ||| |||| |||||||||||||| |||||||| | ||    
T  26375316 agtaatcatccttcaacttgttgtaatatctacgctcatagtattacaaatcagattcacggatatgttctaattttcggtacataacaatagtagggtt 26375217  T
Q  201 gttattaagaaccctaataaccagaattgg 230  Q
    ||||||| |||||||| ||||| |||||||    
T  26375216 gttattacgaaccctactaaccggaattgg 26375187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 7 - 249
Target Start/End: Complemental strand, 42890907 - 42890665
Alignment:
Q  7 attctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgtaacaaaacgtacaacgatatatcgaattagagattttaaacttgtagtaat 106  Q
    ||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||| |||||  ||||||| || || ||||||||    
T  42890907 attctggaagcatgtctcaaaaggtcggacaaggagtaatctttgttgtaacaaaacggacaacgatataccgaatcggagatttcaatctcgtagtaat 42890808  T
Q  107 catccttcaacttgttgtaatatatacgctcataatattccaaatcagattcacaggtatattctgattttcggtacatatcaatagtatgattgttatt 206  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||  || ||||| | ||||||||||| || ||||| || |  |||||||    
T  42890807 catccgtcaacttgttgtaatatctacgctcataatattccaaatcagattcatcggcatattttaattttcggtacgtaacaataatagggatgttatt 42890708  T
Q  207 aagaaccctaataaccagaattggtcatccttctctgttcgga 249  Q
    |  ||||||||||||| ||||||||  |||| |||||||||||    
T  42890707 acaaaccctaataaccggaattggttctcctcctctgttcgga 42890665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 42891250 - 42891474
Alignment:
Q  7 attctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgtaacaaaacgtacaacgatatatcgaattagagattttaaacttgtagtaat 106  Q
    ||||| ||||||||||||||||||||||   ||||||||||||||||||||||||||| ||||||||||| |||||  ||||||| || || ||||||||    
T  42891250 attctggaagcatgtctcaaaaggtcggactaggagtaatctttgttgtaacaaaacggacaacgatataccgaatcggagatttcaatctcgtagtaat 42891349  T
Q  107 catccttcaacttgttgtaatatatacgctcataatattccaaatcagattcacaggtatattctgattttcggtacatatcaatagtatgattgttatt 206  Q
    ||||| ||||||||||||||||| ||| |||||||||||||||||||||||||  |  ||||| ||||||||||||| || ||||| || |  |||||||    
T  42891350 catccgtcaacttgttgtaatatctacactcataatattccaaatcagattcattgacatattttgattttcggtacgtaacaataatagggatgttatt 42891449  T
Q  207 aagaaccctaataaccagaattggt 231  Q
    |  ||||||||||||| ||||||||    
T  42891450 acaaaccctaataaccggaattggt 42891474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 21 - 228
Target Start/End: Original strand, 5646638 - 5646845
Alignment:
Q  21 tctcaaaaggtcggttaaggagtaatctttgttgtaacaaaacgtacaacgatatatcgaattagagattttaaacttgtagtaatcatccttcaacttg 120  Q
    ||||||||||||||| || ||||||||||||||||||||||||| |||||||| ||||||||  |||||||||||||||||||||||||||||||| ||     
T  5646638 tctcaaaaggtcggtcaaagagtaatctttgttgtaacaaaacggacaacgatgtatcgaatcggagattttaaacttgtagtaatcatccttcaatttt 5646737  T
Q  121 ttgtaatatatacgctcataatattccaaatcagattcacaggtatattctgattttcggtacatatcaatagtatgattgttattaagaaccctaataa 220  Q
    ||||||||| |||  ||||| || ||||||||||||| |||||||| || | |||||| |||| ||| | ||||||| ||||||||| ||||||||||||    
T  5646738 ttgtaatatctacattcatagtactccaaatcagatttacaggtatgttttaattttctgtacgtataagtagtatggttgttattacgaaccctaataa 5646837  T
Q  221 ccagaatt 228  Q
    | ||||||    
T  5646838 ctagaatt 5646845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 7 - 246
Target Start/End: Complemental strand, 23571005 - 23570766
Alignment:
Q  7 attctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgtaacaaaacgtacaacgatatatcgaattagagattttaaacttgtagtaat 106  Q
    ||||| ||||||||||||||||||||||  ||||||||||||||| |||||||||||| |||||||||||| ||||  ||||||| ||| ||||||||||    
T  23571005 attctggaagcatgtctcaaaaggtcggacaaggagtaatctttgctgtaacaaaacggacaacgatatattgaatcggagatttcaaatttgtagtaat 23570906  T
Q  107 catccttcaacttgttgtaatatatacgctcataatattccaaatcagattcacaggtatattctgattttcggtacatatcaatagtatgattgttatt 206  Q
    ||||||||||| |  |||||||| |||||||||| ||||||||||||||||||  | ||||||  |||||||||||| || ||||| || |  |||||||    
T  23570905 catccttcaaccttgtgtaatatctacgctcatagtattccaaatcagattcattgctatatttggattttcggtacgtaacaataatagggatgttatt 23570806  T
Q  207 aagaaccctaataaccagaattggtcatccttctctgttc 246  Q
    | |||| || |||||  ||||||||  |||| ||||||||    
T  23570805 acgaactctgataacttgaattggttctcctcctctgttc 23570766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 19496854 - 19497084
Alignment:
Q  1 cctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgtaacaaaacgtacaacgatatatcgaattagagattttaaacttgt 100  Q
    ||||| ||||| ||||||||||||| ||||||||| ||| |||||||||||||||||||||||  ||| |||||| ||||||   |||||||||||| ||    
T  19496854 cctgctattctggaagcatgtctcagaaggtcggtcaagaagtaatctttgttgtaacaaaacagacagcgatatttcgaatcgtagattttaaactcgt 19496953  T
Q  101 agtaatcatccttcaacttgttgtaatatatacgctcataatattccaaatcagattcacaggtatattctgattttcggtacatatcaatagtatgatt 200  Q
     ||||||||||||||| || || |||||  |||| ||||| |||||||||||||||| ||  |||  | ||||||||||||||||| |||||||||| ||    
T  19496954 tgtaatcatccttcaatttattttaatacctacgttcatagtattccaaatcagattaacgagtaagtgctgattttcggtacataacaatagtatggtt 19497053  T
Q  201 gttattaagaaccctaataaccagaattggt 231  Q
    ||||||| |||||||||||||  ||||||||    
T  19497054 gttattacgaaccctaataactggaattggt 19497084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 5e-50; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 5 - 189
Target Start/End: Complemental strand, 24840699 - 24840515
Alignment:
Q  5 ccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgtaacaaaacgtacaacgatatatcgaattagagattttaaacttgtagta 104  Q
    ||||||| ||||||||||||||||||||||| |||||||||  |||||||||| |||||| ||||||| ||  |||||||||||||||||||||||||||    
T  24840699 ccattcttgaagcatgtctcaaaaggtcggtcaaggagtaacttttgttgtaaaaaaacggacaacgacat--cgaattagagattttaaacttgtagta 24840602  T
Q  105 atcatccttcaacttgttgtaatatatacgctcata--atattccaaatcagattcacaggtatattctgattttcggtacatatca 189  Q
    |||||||||||  || ||||||||| ||||||||||  |||||| ||||||||||||| ||||| ||||||||||| |||| |||||    
T  24840601 atcatccttcagttttttgtaatatttacgctcatagtatattctaaatcagattcacgggtatgttctgattttctgtacgtatca 24840515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 153
Target Start/End: Complemental strand, 1786311 - 1786200
Alignment:
Q  42 gtaatctttgttgtaacaaaacgtacaacgatatatcgaattagagattttaaacttgtagtaatcatccttcaacttgttgtaatatatacgctcataa 141  Q
    |||||||||||||||||||||||  |||| |||| ||||||||||||||||||| |||||||||||||||||||  || ||||||||| | ||||||||     
T  1786311 gtaatctttgttgtaacaaaacgggcaacaatatttcgaattagagattttaaaattgtagtaatcatccttcagtttattgtaatatttgcgctcatag 1786212  T
Q  142 tattccaaatca 153  Q
    ||||||||||||    
T  1786211 tattccaaatca 1786200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 1368437 - 1368319
Alignment:
Q  1 cctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgtaacaaaacgtacaacgatatatcgaattagagattttaaacttgt 100  Q
    ||||| |||||  |||||||||||||||||||||| |||||   ||| |||||||||||||||| |||||||||||||||||  ||||||||||||| ||    
T  1368437 cctgcaattctaaaagcatgtctcaaaaggtcggtcaagga---atccttgttgtaacaaaacggacaacgatatatcgaatcggagattttaaactcgt 1368341  T
Q  101 agtaatcatccttcaacttgtt 122  Q
    | | ||||||||||||||||||    
T  1368340 aatgatcatccttcaacttgtt 1368319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 134 - 249
Target Start/End: Complemental strand, 4300844 - 4300729
Alignment:
Q  134 gctcataatattccaaatcagattcacaggtatattctgattttcggtacatatcaatagtatgattgttattaagaaccctaataaccagaattggtca 233  Q
    ||||||| ||||||||||||||||||  || ||||| |||| |||||||| || |||||||||| |||||||||  ||||||||||| | ||||||||      
T  4300844 gctcatagtattccaaatcagattcattggcatattttgatgttcggtacgtaacaatagtatggttgttattacaaaccctaataatcggaattggttc 4300745  T
Q  234 tccttctctgttcgga 249  Q
    | || |||||||||||    
T  4300744 ttctcctctgttcgga 4300729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 249
Target Start/End: Complemental strand, 1367010 - 1366924
Alignment:
Q  163 gtatattctgattttcggtacatatcaatagtatgattgttattaagaaccctaataaccagaattggtcatccttctctgttcgga 249  Q
    |||| |||| ||||||| |||||| ||||| |||| ||||||||| |||||||||||||| |||||| || |||| |||||||||||    
T  1367010 gtatgttctaattttcgatacataacaataatatggttgttattacgaaccctaataaccggaattgatcctcctcctctgttcgga 1366924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 21 - 246
Target Start/End: Complemental strand, 16533 - 16308
Alignment:
Q  21 tctcaaaaggtcggttaaggagtaatctttgttgtaacaaaacgtacaacgatatatcgaattagagattttaaacttgtagtaatcatccttcaacttg 120  Q
    ||||||||||||||| || ||||||||||||||||||||||| | ||||| |||||||||||   ||||||||||||||||||||||||||||||   |     
T  16533 tctcaaaaggtcggtcaaagagtaatctttgttgtaacaaaatggacaacaatatatcgaatctaagattttaaacttgtagtaatcatccttcagtgtt 16434  T
Q  121 ttgtaatatatacgctcataatattccaaatcagattcacaggtatattctgattttcggtacatatcaatagtatgattgttattaagaaccctaataa 220  Q
    ||||||| | || ||||||| | | | ||||||||||||| ||||| ||| ||||||| ||||||| || ||||||| ||||||||| || |||||||||    
T  16433 ttgtaatgtctatgctcatactctactaaatcagattcacgggtatgttcagattttctgtacataacagtagtatggttgttattatgagccctaataa 16334  T
Q  221 ccagaattggtcatccttctctgttc 246  Q
    ||| |||||||  |||||| ||||||    
T  16333 ccaaaattggtactccttccctgttc 16308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 43306357 - 43306479
Alignment:
Q  7 attctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgtaacaaaacgtacaacgatatatcgaattagagattttaaacttgtagtaat 106  Q
    ||||| |||||||||||||| ||||| |  |||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| || || ||||||||    
T  43306357 attctagaagcatgtctcaataggtcagacaaggagtaatctttgttgtaacaaaacggacaacgatataccgaatcagagatttcaatctcgtagtaat 43306456  T
Q  107 catccttcaacttgttgtaatat 129  Q
    ||||| |||||||||||||||||    
T  43306457 catccgtcaacttgttgtaatat 43306479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 22923597 - 22923526
Alignment:
Q  5 ccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgtaacaaaacgtacaacgatata 76  Q
    ||||||| |||||||||||||||| |||||| ||| |||||||||||||| ||||||||| |||||||||||    
T  22923597 ccattctggaagcatgtctcaaaatgtcggtcaagaagtaatctttgttgcaacaaaacggacaacgatata 22923526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 22928250 - 22928179
Alignment:
Q  5 ccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgtaacaaaacgtacaacgatata 76  Q
    ||||||| |||||||||||||||| |||||| ||| |||||||||||||| ||||||||| |||||||||||    
T  22928250 ccattctggaagcatgtctcaaaatgtcggtcaagaagtaatctttgttgcaacaaaacggacaacgatata 22928179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 22984529 - 22984458
Alignment:
Q  5 ccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgtaacaaaacgtacaacgatata 76  Q
    ||||||| |||||||||||||||| |||||| ||| |||||||||||||| ||||||||| |||||||||||    
T  22984529 ccattctggaagcatgtctcaaaatgtcggtcaagaagtaatctttgttgcaacaaaacggacaacgatata 22984458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 22998117 - 22998046
Alignment:
Q  5 ccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgtaacaaaacgtacaacgatata 76  Q
    ||||||| |||||||||||||||| |||||| ||| |||||||||||||| ||||||||| |||||||||||    
T  22998117 ccattctggaagcatgtctcaaaatgtcggtcaagaagtaatctttgttgcaacaaaacggacaacgatata 22998046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 22721471 - 22721511
Alignment:
Q  37 aaggagtaatctttgttgtaacaaaacgtacaacgatatat 77  Q
    |||||||||||||| ||||||||||||| ||||||||||||    
T  22721471 aaggagtaatctttcttgtaacaaaacggacaacgatatat 22721511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 22691558 - 22691515
Alignment:
Q  186 atcaatagtatgattgttattaagaaccctaataaccagaattg 229  Q
    ||||||||| |||||||||||| |||||||||||||| ||||||    
T  22691558 atcaatagtctgattgttattacgaaccctaataaccggaattg 22691515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 22768374 - 22768411
Alignment:
Q  45 atctttgttgtaacaaaacgtacaacgatatatcgaat 82  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  22768374 atctttgttgtaacaaaacggacaacgatatattgaat 22768411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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