View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_low_54 (Length: 289)
Name: NF16638_low_54
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_low_54 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 30410776 - 30411037
Alignment:
| Q |
18 |
gatattaatcttgaaatagaggttaatgaagaactgacaaaaaggagagaagatatagcaaaagtttcaatgaaaagtcataaggtgagtaacagggcac |
117 |
Q |
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| T |
30410776 |
gatattaatcttgaaatagaggttaatgaagaactgacaaaaaggagagaagatatagcaaaagtttgaatgaaaaatcatgaggtgagtaacagggcac |
30410875 |
T |
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| Q |
118 |
aaagtctgaatcaaggtaaaacaatgattgaagattctggaagcactaatggttcaaaatttgttgatgctacacaacaagtcaattatgaaaatgaaga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30410876 |
aaagtctgaatcaaggtaaaacaatgattgaagattctggaagcactaatggttcaaaatttgttgatgctacacaacaagtcaattatgaaaatgaaga |
30410975 |
T |
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| Q |
218 |
ttctgagaataatgcaagtgaagaggaggaggttgcatcagagaacagtgctaatgatgatg |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30410976 |
ttctgagaataatgcaagtgaagaggaggaggttgcatcagaaaacagtgctaatgatgatg |
30411037 |
T |
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