View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16638_low_57 (Length: 282)

Name: NF16638_low_57
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16638_low_57
NF16638_low_57
[»] chr3 (3 HSPs)
chr3 (163-277)||(16676054-16676168)
chr3 (1-70)||(16675892-16675961)
chr3 (12-69)||(4189848-4189904)
[»] chr5 (6 HSPs)
chr5 (12-63)||(10059696-10059747)
chr5 (13-56)||(18658215-18658258)
chr5 (12-55)||(22402774-22402817)
chr5 (12-69)||(22203831-22203888)
chr5 (13-69)||(16532342-16532398)
chr5 (13-69)||(16542053-16542109)
[»] chr8 (9 HSPs)
chr8 (15-69)||(8142908-8142962)
chr8 (14-69)||(20284831-20284886)
chr8 (14-69)||(21071460-21071515)
chr8 (14-64)||(36637797-36637847)
chr8 (12-65)||(36805140-36805193)
chr8 (13-68)||(13540800-13540855)
chr8 (13-68)||(13683618-13683673)
chr8 (12-69)||(3206353-3206410)
chr8 (37-69)||(22999466-22999498)
[»] chr6 (2 HSPs)
chr6 (12-69)||(20006672-20006729)
chr6 (12-69)||(3401203-3401260)
[»] chr2 (6 HSPs)
chr2 (12-69)||(42607425-42607482)
chr2 (32-69)||(44059633-44059670)
chr2 (12-70)||(42141500-42141558)
chr2 (12-69)||(6742300-6742357)
chr2 (14-70)||(36582379-36582435)
chr2 (14-66)||(44530697-44530749)
[»] chr7 (4 HSPs)
chr7 (15-70)||(41227198-41227253)
chr7 (12-69)||(32315950-32316007)
chr7 (13-69)||(31467728-31467784)
chr7 (13-65)||(46445096-46445148)
[»] chr4 (7 HSPs)
chr4 (12-69)||(24088430-24088487)
chr4 (12-69)||(34259950-34260007)
chr4 (12-69)||(46282385-46282442)
chr4 (12-52)||(40090824-40090864)
chr4 (12-67)||(3475994-3476049)
chr4 (30-67)||(37869679-37869716)
chr4 (13-69)||(33574965-33575021)
[»] chr1 (4 HSPs)
chr1 (13-68)||(13361480-13361535)
chr1 (12-57)||(25586557-25586602)
chr1 (14-66)||(31832983-31833035)
chr1 (14-66)||(45863736-45863788)


Alignment Details
Target: chr3 (Bit Score: 82; Significance: 9e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 163 - 277
Target Start/End: Original strand, 16676054 - 16676168
Alignment:
Q  163 tatcataaaagatcgcaaaaatatcgttttccaccagctaatattcannnnnnncctagcaaactcagttttgtcatgtcaatcacagccagttctcgac 262  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  16676054 tatcataaaagaccgcaaaaatatcgttttccaccggctaatattcatttttttcctagcaaactcagttttgtcatgtcaatcacagccagttctcgac 16676153  T
Q  263 aacattcatctcact 277  Q
    ||||||||| |||||    
T  16676154 aacattcatatcact 16676168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 16675892 - 16675961
Alignment:
Q  1 aaaatggtggggtaatgatatttttacaattatttgatgataacttttgtgacaaccttctttttctcta 70  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16675892 aaaatggtggggtaatgatatttgtacaattatttgatgataacttttgtgacaaccttctttttctcta 16675961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 4189904 - 4189848
Alignment:
Q  12 gtaatgatatttttacaattatttgatgataacttttgtgacaaccttctttttctct 69  Q
    |||||||||||| || ||||||||||||| |||||||||||  | |||||||||||||    
T  4189904 gtaatgatatttgta-aattatttgatgacaacttttgtgattatcttctttttctct 4189848  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 10059747 - 10059696
Alignment:
Q  12 gtaatgatatttttacaattatttgatgataacttttgtgacaaccttcttt 63  Q
    |||||||||||| |||||||||||||| |||||||||||| |||||||||||    
T  10059747 gtaatgatatttgtacaattatttgataataacttttgtggcaaccttcttt 10059696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 18658215 - 18658258
Alignment:
Q  13 taatgatatttttacaattatttgatgataacttttgtgacaac 56  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  18658215 taatgatatttgtacaattatttgatgataacttttgtgacaac 18658258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 22402817 - 22402774
Alignment:
Q  12 gtaatgatatttttacaattatttgatgataacttttgtgacaa 55  Q
    |||||||||||| || ||||||||||||| ||||||||||||||    
T  22402817 gtaatgatatttgtataattatttgatgacaacttttgtgacaa 22402774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 22203888 - 22203831
Alignment:
Q  12 gtaatgatatttttacaattatttgatgataacttttgtgacaaccttctttttctct 69  Q
    ||||| |||||| |||||  |||||||| ||| |||||||||||||||| ||||||||    
T  22203888 gtaataatatttgtacaaccatttgatggtaatttttgtgacaaccttccttttctct 22203831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 16532398 - 16532342
Alignment:
Q  13 taatgatatttttacaattatttgatgataacttttgtgacaaccttctttttctct 69  Q
    ||||||||||| ||| ||||||| ||||||||||||  |||||  ||||||||||||    
T  16532398 taatgatatttgtaccattatttcatgataacttttacgacaattttctttttctct 16532342  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 16542109 - 16542053
Alignment:
Q  13 taatgatatttttacaattatttgatgataacttttgtgacaaccttctttttctct 69  Q
    ||||||||||| ||||||||||| ||||||||||||  |||||  ||||||| ||||    
T  16542109 taatgatatttgtacaattatttcatgataacttttacgacaattttcttttgctct 16542053  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 8142908 - 8142962
Alignment:
Q  15 atgatatttttacaattatttgatgataacttttgtgacaaccttctttttctct 69  Q
    |||||||||  ||||||||||||||| ||||||||||||||||||| ||||||||    
T  8142908 atgatatttgaacaattatttgatgacaacttttgtgacaaccttccttttctct 8142962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 20284886 - 20284831
Alignment:
Q  14 aatgatatttttacaattatttgatgataacttttgtgacaaccttctttttctct 69  Q
    ||||||||||  ||||  ||||||||| ||||||||||||||||||||||||||||    
T  20284886 aatgatatttgaacaaccatttgatgacaacttttgtgacaaccttctttttctct 20284831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 21071515 - 21071460
Alignment:
Q  14 aatgatatttttacaattatttgatgataacttttgtgacaaccttctttttctct 69  Q
    ||||||||||  ||||  ||||||||| ||||||||||||||||||||||||||||    
T  21071515 aatgatatttgaacaaccatttgatgacaacttttgtgacaaccttctttttctct 21071460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 36637847 - 36637797
Alignment:
Q  14 aatgatatttttacaattatttgatgataacttttgtgacaaccttctttt 64  Q
    |||||||||| |||||| ||||| |||||| ||||||||||||||||||||    
T  36637847 aatgatatttgtacaatcatttggtgataatttttgtgacaaccttctttt 36637797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 36805193 - 36805140
Alignment:
Q  12 gtaatgatatttttacaattatttgatgataacttttgtgacaaccttcttttt 65  Q
    |||||||||||| |||||| ||||||| ||||||||||||||||| || |||||    
T  36805193 gtaatgatatttgtacaatcatttgataataacttttgtgacaactttattttt 36805140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 13540800 - 13540855
Alignment:
Q  13 taatgatatttttacaattatttgatgataacttttgtgacaaccttctttttctc 68  Q
    ||||||||||| ||||| |||||  |||||||||||||||||| ||| ||||||||    
T  13540800 taatgatatttgtacaactatttagtgataacttttgtgacaatcttttttttctc 13540855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 13683673 - 13683618
Alignment:
Q  13 taatgatatttttacaattatttgatgataacttttgtgacaaccttctttttctc 68  Q
    ||||||||||| ||||| |||||  |||||||||||||||||| ||| ||||||||    
T  13683673 taatgatatttgtacaactatttagtgataacttttgtgacaatcttttttttctc 13683618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 3206353 - 3206410
Alignment:
Q  12 gtaatgatatttttacaattatttgatgataacttttgtgacaaccttctttttctct 69  Q
    ||||||||||||  ||||  |||||||||||| |||||||||||| | ||||||||||    
T  3206353 gtaatgatatttgaacaaccatttgatgataatttttgtgacaacatactttttctct 3206410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 22999466 - 22999498
Alignment:
Q  37 atgataacttttgtgacaaccttctttttctct 69  Q
    |||| ||||||||||||||||||||||||||||    
T  22999466 atgacaacttttgtgacaaccttctttttctct 22999498  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 20006672 - 20006729
Alignment:
Q  12 gtaatgatatttttacaattatttgatgataacttttgtgacaaccttctttttctct 69  Q
    |||||||||||| ||  | |||||| ||||||||||||||||||||||||||||||||    
T  20006672 gtaatgatatttgtatcactatttggtgataacttttgtgacaaccttctttttctct 20006729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 3401260 - 3401203
Alignment:
Q  12 gtaatgatatttttacaattatttgatgataacttttgtgacaaccttctttttctct 69  Q
    |||||||||||| |||||||||||||| |  ||||||||||||| |||  ||||||||    
T  3401260 gtaatgatatttgtacaattatttgataacgacttttgtgacaatctttcttttctct 3401203  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 42607425 - 42607482
Alignment:
Q  12 gtaatgatatttttacaattatttgatgataacttttgtgacaaccttctttttctct 69  Q
    |||||||||||| |||||| || |||||| ||||||||||||||||||| ||||||||    
T  42607425 gtaatgatatttgtacaatcatatgatgacaacttttgtgacaaccttccttttctct 42607482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 44059633 - 44059670
Alignment:
Q  32 atttgatgataacttttgtgacaaccttctttttctct 69  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  44059633 atttgatgataacttttgtgacaacctactttttctct 44059670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 42141500 - 42141558
Alignment:
Q  12 gtaatgatatttttacaattatttgatgataacttttgtgacaaccttctttttctcta 70  Q
    ||||||||||||  |||  |||||||||||||||||  |||||||||| ||||||||||    
T  42141500 gtaatgatatttggacatctatttgatgataactttgttgacaaccttgtttttctcta 42141558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 6742300 - 6742357
Alignment:
Q  12 gtaatgatatttttacaattatttgatgataacttttgtgacaaccttctttttctct 69  Q
    ||||||||| || |||||| ||||| ||| |||||||||||||| ||||||| |||||    
T  6742300 gtaatgataattgtacaatcatttgttgacaacttttgtgacaatcttctttctctct 6742357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 36582435 - 36582379
Alignment:
Q  14 aatgatatttttacaattatttgatgataacttttgtgacaaccttctttttctcta 70  Q
    |||||||||| ||||   ||||||||| |||||| ||||||||||| ||||||||||    
T  36582435 aatgatatttgtacatccatttgatgacaactttggtgacaaccttgtttttctcta 36582379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 44530749 - 44530697
Alignment:
Q  14 aatgatatttttacaattatttgatgataacttttgtgacaaccttctttttc 66  Q
    ||||||||||  |||||||||| |||||||||||| ||||||  |||||||||    
T  44530749 aatgatatttgaacaattattttatgataacttttatgacaattttctttttc 44530697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 41227253 - 41227198
Alignment:
Q  15 atgatatttttacaattatttgatgataacttttgtgacaaccttctttttctcta 70  Q
    |||||||||||||||  ||||||||| || ||||||||||||||| ||||||||||    
T  41227253 atgatatttttacaaccatttgatgaaaatttttgtgacaaccttatttttctcta 41227198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 32316007 - 32315950
Alignment:
Q  12 gtaatgatatttttacaattatttgatgataacttttgtgacaaccttctttttctct 69  Q
    ||||||||||||  |||| ||||||| || ||||||||||||||| || |||||||||    
T  32316007 gtaatgatatttgaacaactatttgacgacaacttttgtgacaacattgtttttctct 32315950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 31467784 - 31467728
Alignment:
Q  13 taatgatatttttacaattatttgatgataacttttgtgacaaccttctttttctct 69  Q
    ||||||||||| ||||||  |||||||| ||||||||||| ||| ||| ||||||||    
T  31467784 taatgatatttgtacaatcgtttgatgacaacttttgtgataactttcattttctct 31467728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 46445148 - 46445096
Alignment:
Q  13 taatgatatttttacaattatttgatgataacttttgtgacaaccttcttttt 65  Q
    ||||||||||| || || ||||||||||||| |||||||||||  ||||||||    
T  46445148 taatgatatttgtataaatatttgatgataatttttgtgacaattttcttttt 46445096  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 24088430 - 24088487
Alignment:
Q  12 gtaatgatatttttacaattatttgatgataacttttgtgacaaccttctttttctct 69  Q
    ||||||||||||||||||  ||||| ||| |||| ||||||||||||||| |||||||    
T  24088430 gtaatgatatttttacaaccatttggtgacaactcttgtgacaaccttctctttctct 24088487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 34260007 - 34259950
Alignment:
Q  12 gtaatgatatttttacaattatttgatgataacttttgtgacaaccttctttttctct 69  Q
    |||||||||||| |||||  ||||| ||| |||||||||||||| |||||||||||||    
T  34260007 gtaatgatatttgtacaaccatttggtgacaacttttgtgacaaacttctttttctct 34259950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 46282442 - 46282385
Alignment:
Q  12 gtaatgatatttttacaattatttgatgataacttttgtgacaaccttctttttctct 69  Q
    |||||||||||| |||| | |||||||||||| |||||||||||| || |||||||||    
T  46282442 gtaatgatatttgtacactcatttgatgataatttttgtgacaactttatttttctct 46282385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 40090864 - 40090824
Alignment:
Q  12 gtaatgatatttttacaattatttgatgataacttttgtga 52  Q
    |||||||||||| |||||||||||||||| |||||||||||    
T  40090864 gtaatgatatttgtacaattatttgatgagaacttttgtga 40090824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 3476049 - 3475994
Alignment:
Q  12 gtaatgatatttttacaattatttgatgataacttttgtgacaaccttctttttct 67  Q
    ||||||||||||| ||||  ||||||||| ||| |||||||||||||| |||||||    
T  3476049 gtaatgatattttgacaaccatttgatgacaacatttgtgacaaccttatttttct 3475994  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 37869679 - 37869716
Alignment:
Q  30 ttatttgatgataacttttgtgacaaccttctttttct 67  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  37869679 ttatttgatgacaacttttgtgacaaccttgtttttct 37869716  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 33574965 - 33575021
Alignment:
Q  13 taatgatatttttacaattatttgatgataacttttgtgacaaccttctttttctct 69  Q
    ||||||||||| |||||||||||   || |||||||||||||  |||||||||||||    
T  33574965 taatgatatttgtacaattatttcgggacaacttttgtgacactcttctttttctct 33575021  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 13361480 - 13361535
Alignment:
Q  13 taatgatatttttacaattatttgatgataacttttgtgacaaccttctttttctc 68  Q
    ||||||||||| |||||  |||| |||| || ||||||||||||||||||||||||    
T  13361480 taatgatatttatacaacaattttatgacaatttttgtgacaaccttctttttctc 13361535  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 25586557 - 25586602
Alignment:
Q  12 gtaatgatatttttacaattatttgatgataacttttgtgacaacc 57  Q
    |||||||||||| |||||| |||||||||||| |||| ||||||||    
T  25586557 gtaatgatatttgtacaatcatttgatgataatttttttgacaacc 25586602  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 31833035 - 31832983
Alignment:
Q  14 aatgatatttttacaattatttgatgataacttttgtgacaaccttctttttc 66  Q
    |||||||||| || |||||||||| ||||||||||||| ||| ||| ||||||    
T  31833035 aatgatatttgtataattatttgaagataacttttgtgtcaatcttttttttc 31832983  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 45863788 - 45863736
Alignment:
Q  14 aatgatatttttacaattatttgatgataacttttgtgacaaccttctttttc 66  Q
    |||||||||| |||||||||||  |||||| |||||||||||  |||||||||    
T  45863788 aatgatatttgtacaattattttttgataatttttgtgacaattttctttttc 45863736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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