View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_low_58 (Length: 282)
Name: NF16638_low_58
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_low_58 |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 282
Target Start/End: Complemental strand, 52375429 - 52375164
Alignment:
| Q |
17 |
gctgtaaactgtctgtccacgcgataagaagatcatacgatcaagaagacctaatattctgtaacttggttgatgaattgacatgatcacgatgcttcca |
116 |
Q |
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| T |
52375429 |
gctgtaaactgtctgtccacgcgataagaagatcatacgatcaagaagacctaagattctgtaacttggttgatgaattgacatgatcacgatgcttcca |
52375330 |
T |
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| Q |
117 |
ctttgtgcaattctctgaagtactttcacaaccatgaaagcacttgtggaatccaatcctgaagttggttcatctaggaagagcactattggatcatgga |
216 |
Q |
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| T |
52375329 |
ctttgtgcaattctctgaagtactttaacaaccatgaaagcacttgtggaatccaatcctgaagttggttcatctaggaagagcactattggatcatgga |
52375230 |
T |
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| Q |
217 |
ttatgtcgattccgattgaaactcgacgcctttctccaccagagactccacggtgaccttcatctc |
282 |
Q |
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| T |
52375229 |
ttatgtcgattccgattgaaactcgacgcctttctccaccagagactccacggtgaccttcgtctc |
52375164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 282
Target Start/End: Original strand, 40383779 - 40383989
Alignment:
| Q |
72 |
attctgtaacttggttgatgaattgacatgatcacgatgcttccactttgtgcaattctctgaagtactttcacaaccatgaaagcacttgtggaatcca |
171 |
Q |
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| T |
40383779 |
attctgtagcttggttgatgaacggtcatcatgacgatgctaccgctctgagcaattctctgcaaaaccttcaccaccatgtaagcgcttgtagagtcaa |
40383878 |
T |
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| Q |
172 |
atcctgaagttggttcatctaggaagagcactattggatcatggattatgtcgattccgattgaaactcgacgcctttctccaccagagactccacggtg |
271 |
Q |
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| T |
40383879 |
gtccagaggttggttcatccaagaacaaaatgattggatcgtggatgatgtctgtgccgatggagacacggcggcgttctccaccggaaacaccacggtg |
40383978 |
T |
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| Q |
272 |
accttcatctc |
282 |
Q |
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| T |
40383979 |
accttcatctc |
40383989 |
T |
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