View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16638_low_6 (Length: 621)
Name: NF16638_low_6
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_low_6 |
 | |
|
| [»] scaffold0691 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 22)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 52 - 460
Target Start/End: Complemental strand, 2799534 - 2799126
Alignment:
| Q |
52 |
ggcatatcagtgaagtaaatatctttgagtttatgcatgtgctttatgccaatggctacctctttcagctgggggattttttccagtgtaagatgttcaa |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2799534 |
ggcatatcagtgaagtaaatatctttgagtttatgcatgtgctttatgccaatgggtacctccttcagctgggggattttttccagtgtaagatgttcaa |
2799435 |
T |
|
| Q |
152 |
gagatagcaaagttccattctcaataatgatggaatttattctattcaagtgtcggaggttcagtgtgttcaattttagaaaccctccatttcgaaaatg |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2799434 |
gagatagcaaagttccattctcaataatgatggaatttattctattcaagtgtcgaaggttcagtgtgttcaattttagaaaccctccatttcgaaaatg |
2799335 |
T |
|
| Q |
252 |
aaaaatttcaccatcatagcaattgtcccacaaacagagattgagaagattcggtaagttttgcagtgactgcaatggatcatatttcaacatagaaaag |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2799334 |
aaaaatttcaccatcatagcaattgtcccacaaacagagattgagaagattcggtaagttttgcagtgactgcaatggatcatatttcaacatagaaaag |
2799235 |
T |
|
| Q |
352 |
ctcagctttaccttaacaagacactcaagttttgcaatccaatcgggcaacttctgtagtctacctttcaaatgtagccactgaagttggggtggggatg |
451 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2799234 |
ctcagctttaccttaacgagacactcaagttttgcaatccaatcgggcaacttctgtagtctacctttcaaatgtagccgctgaagttggggtggggatg |
2799135 |
T |
|
| Q |
452 |
atataaagt |
460 |
Q |
| |
|
||||||||| |
|
|
| T |
2799134 |
atataaagt |
2799126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 52 - 456
Target Start/End: Complemental strand, 2771233 - 2770829
Alignment:
| Q |
52 |
ggcatatcagtgaagtaaatatctttgagtttatgcatgtgctttatgccaatggctacctctttcagctgggggattttttccagtgtaagatgttcaa |
151 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||| | || ||||||| || |||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2771233 |
ggcatatcagtgatgtgaatatctttgagtttatgcatgagtttgatgccaaagggtacctccttcagttgggggattttttccagtgtaagatgttcaa |
2771134 |
T |
|
| Q |
152 |
gagatagcaaagttccattctcaataatgatggaatttattctattcaagtgtcggaggttcagtgtgttcaattttagaaaccctccatttcgaaaatg |
251 |
Q |
| |
|
|||| |||||| |||||| ||||||| ||||| || | | |||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
2771133 |
gagagagcaaatttccatggtcaataacaatggagttaactttattcaagcaacggagattcagtgtcatcaattttagaaaccctccattttgaaaatg |
2771034 |
T |
|
| Q |
252 |
aaaaatttcaccatcatagcaattgtcccacaaacagagattgagaagattcggtaagttttgcagtgactgcaatggatcatatttcaacatagaaaag |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| | | |||||||| | ||||| ||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
2771033 |
aaaaatttcaccatcatagcaattgtcccacaaacaaagactcaccagattcggcatgtttttcagtgactgcagtggattatctttcaacatagaaaaa |
2770934 |
T |
|
| Q |
352 |
ctcagctttaccttaacaagacactcaagttttgcaatccaatcgggcaacttctgtagtctacctttcaaatgtagccactgaagttggggtggggatg |
451 |
Q |
| |
|
||||| ||||||||||||| |||||||||| || ||||||||| |||||||||||||||||| ||||||||||||||| | |||||||||||||||||| |
|
|
| T |
2770933 |
ctcagtcttaccttaacaaggcactcaagttctggaatccaatcaggcaacttctgtagtctagctttcaaatgtagccgcagaagttggggtggggatg |
2770834 |
T |
|
| Q |
452 |
atata |
456 |
Q |
| |
|
||||| |
|
|
| T |
2770833 |
atata |
2770829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 52 - 456
Target Start/End: Complemental strand, 2792487 - 2792083
Alignment:
| Q |
52 |
ggcatatcagtgaagtaaatatctttgagtttatgcatgtgctttatgccaatggctacctctttcagctgggggattttttccagtgtaagatgttcaa |
151 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||| | || |||||| || |||| | ||||| ||||||||||||||||| ||||||||||| | |
|
|
| T |
2792487 |
ggcatatcagtgacgtgaatatctttgagtttatgcatgagtttgatgccagagggtaccgccttcagttgggggattttttccagagtaagatgttcga |
2792388 |
T |
|
| Q |
152 |
gagatagcaaagttccattctcaataatgatggaatttattctattcaagtgtcggaggttcagtgtgttcaattttagaaaccctccatttcgaaaatg |
251 |
Q |
| |
|
|||| ||||| |||||||| ||||||| | || |||| | ||| |||| |||||||||||||| ||| ||| ||||||||||||||| ||||||| |
|
|
| T |
2792387 |
gagagagcaaggttccattgtcaataacaaccgagtttactttatacaagcaacggaggttcagtgtcatcagtttaagaaaccctccattttgaaaatg |
2792288 |
T |
|
| Q |
252 |
aaaaatttcaccatcatagcaattgtcccacaaacagagattgagaagattcggtaagttttgcagtgactgcaatggatcatatttcaacatagaaaag |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| | | |||||||| ||||||| |||||||||| ||||||||| |||||||||||||| |
|
|
| T |
2792287 |
aaaaatttcaccatcatagcaattgtcccacaaacaaagactaaccagattcggcaagtttttgagtgactgcagtggatcatagttcaacatagaaaaa |
2792188 |
T |
|
| Q |
352 |
ctcagctttaccttaacaagacactcaagttttgcaatccaatcgggcaacttctgtagtctacctttcaaatgtagccactgaagttggggtggggatg |
451 |
Q |
| |
|
||||| ||||||||||||| |||||||||| || ||||||||| |||||||| ||||||||| ||||||||||||||| | |||||||||| ||||||| |
|
|
| T |
2792187 |
ctcagtcttaccttaacaaggcactcaagttctggaatccaatcaggcaacttttgtagtctagctttcaaatgtagccgcagaagttggggaggggatg |
2792088 |
T |
|
| Q |
452 |
atata |
456 |
Q |
| |
|
||||| |
|
|
| T |
2792087 |
atata |
2792083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 464 - 603
Target Start/End: Complemental strand, 2799093 - 2798954
Alignment:
| Q |
464 |
gagatattcagattttcaaggtgtgtcatttctgctacagcagcacttaaggaattcccatgttctcctctgacatgccttaaacctaacctccttaaat |
563 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
2799093 |
gagatattcagattttcaaggtgtgtcatttctgctacagcagcacttaaggaattcccatgttctcctctgacatgccttaaacctgaactccttaaat |
2798994 |
T |
|
| Q |
564 |
tccttagcattttcatttcttgaatgagatcaacccctcc |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2798993 |
tccttagcattttcatttcttgaatgagatcaacccctcc |
2798954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 460 - 594
Target Start/End: Complemental strand, 2792050 - 2791916
Alignment:
| Q |
460 |
tgcagagatattcagattttcaaggtgtgtcatttctgctacagcagcacttaaggaattcccatgttctcctctgacatgccttaaacctaacctcctt |
559 |
Q |
| |
|
|||||||||||| |||| |||||||||| ||||||||||||| ||||||| ||||| |||||||||||||| ||| || || ||||| |||||||||||| |
|
|
| T |
2792050 |
tgcagagatattaagatattcaaggtgtttcatttctgctactgcagcacataaggcattcccatgttctcgtcttacttgacttaagcctaacctcctt |
2791951 |
T |
|
| Q |
560 |
aaattccttagcattttcatttcttgaatgagatc |
594 |
Q |
| |
|
|| | ||||||||||||||| |||||||||||||| |
|
|
| T |
2791950 |
aactgccttagcattttcatctcttgaatgagatc |
2791916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 466 - 600
Target Start/End: Complemental strand, 2808997 - 2808863
Alignment:
| Q |
466 |
gatattcagattttcaaggtgtgtcatttctgctacagcagcacttaaggaattcccatgttctcctctgacatgccttaaacctaacctccttaaattc |
565 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| ||| ||||||| ||||| |||||||||||||| ||| |||||||||||||||||||||||||| | | |
|
|
| T |
2808997 |
gatattaagattttcaaggtgtttcatttctactattgcagcacataaggcattcccatgttctcttctcacatgccttaaacctaacctccttaactgc |
2808898 |
T |
|
| Q |
566 |
cttagcattttcatttcttgaatgagatcaacccc |
600 |
Q |
| |
|
| || ||||||||| |||||||||||||| ||||| |
|
|
| T |
2808897 |
cctaacattttcatctcttgaatgagatctacccc |
2808863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 131 - 448
Target Start/End: Complemental strand, 2751089 - 2750772
Alignment:
| Q |
131 |
tttccagtgtaagatgttcaagagatagcaaagttccattctcaataatgatggaatttattctattcaagtgtcggaggttcagtgtgttcaattttag |
230 |
Q |
| |
|
|||||| | |||||| ||||||||| ||||||| ||| ||||| |||| ||| |||||| |||||||||||| | ||| ||||| |||||| || | |
|
|
| T |
2751089 |
tttccaatttaagattttcaagagagagcaaagctcctttctctataaggatagaatttggtctattcaagtgactgagaatcagttctttcaatatttg |
2750990 |
T |
|
| Q |
231 |
aaaccctccatttcgaaaatgaaaaatttcaccatcatagcaattgtcccacaaacagagattgagaagattcggtaagttttgcagtgactgcaatgga |
330 |
Q |
| |
|
||| ||||||||| ||||||| ||||||||||||||| || ||| ||| ||||| ||| || |||||||| || || |||| |||||||||||| ||| |
|
|
| T |
2750989 |
aaatcctccattttgaaaatgcaaaatttcaccatcaaaggcattctccaacaaattgagcttcagaagatttggcaaatttttcagtgactgcaacgga |
2750890 |
T |
|
| Q |
331 |
tcatatttcaacataga-aaagctcagctttaccttaacaagacactcaagttttgcaatccaatcgggcaacttctgtagtctacctttcaaatgtagc |
429 |
Q |
| |
|
|||| ||||| | | || ||||| ||| | || |||||||||||||| ||||| ||||||||| || ||||||| ||||||| |||||||||| ||| |
|
|
| T |
2750889 |
tcatctttcagcttggataaagc-cagacaaatctgaacaagacactcaaattttggaatccaatcaggaaacttctctagtctagctttcaaatggagc |
2750791 |
T |
|
| Q |
430 |
cactgaagttggggtgggg |
448 |
Q |
| |
|
| ||||||| ||||||| |
|
|
| T |
2750790 |
cgttgaagttttggtgggg |
2750772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 52 - 452
Target Start/End: Complemental strand, 2761387 - 2760987
Alignment:
| Q |
52 |
ggcatatcagtgaagtaaatatctttgagtttatgcatgtgctttatgccaatggctacctctttcagctgggggattttttccagtgtaagatgttcaa |
151 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||| || | | | ||||| || ||||| || |||||||||||| | |||| | |||| ||||| |
|
|
| T |
2761387 |
ggcatttcagtgaagttaatatctttgagtttatccaaggacctgatgcctgagggcacctcctttagctgggggattctgtccatgttcagatattcaa |
2761288 |
T |
|
| Q |
152 |
gagatagcaaagttccattctcaataatgatggaatttattctattcaagtgtcggaggttcagtgtgttcaattttagaaaccctccatttcgaaaatg |
251 |
Q |
| |
|
|||| | ||||||||| | || |||| ||| ||||||| ||||||||| | | |||||||||| | ||||| ||||||||||||||| || ||||||| |
|
|
| T |
2761287 |
gagagatcaaagttccttcgtctataaggatagaatttaccctattcaagcgcctgaggttcagtctcttcaactttagaaaccctccaatttgaaaatg |
2761188 |
T |
|
| Q |
252 |
aaaaatttcaccatcatagcaattgtcccacaaacagagattgagaagattcggtaagttttgcagtgactgcaatggatcatatttcaacataga-aaa |
350 |
Q |
| |
|
|||||||||||||||||| |||||||| | || || || | ||||| || ||||||| |||||||||| |||||||| |||||| ||| ||| |
|
|
| T |
2761187 |
caaaatttcaccatcataggcgttgtcccatagaccgaacttcaacagatttggcaagtttttaagtgactgcagtggatcatttttcaagtaagataaa |
2761088 |
T |
|
| Q |
351 |
gctcagctttaccttaacaagacactcaagttttgcaatccaatcgggcaacttctgtagtctacctttcaaatgtagccactgaagttggggtggggat |
450 |
Q |
| |
|
|| || ||||| || ||||||| |||||||||||| |||||| || ||||| | | |||| || |||||||||| ||| |||||||||||| || ||| |
|
|
| T |
2761087 |
gc-caactttatctcaacaagatactcaagttttggaatccattcaggcaatgtatctagtttagctttcaaatgaagcgcctgaagttggggcggagat |
2760989 |
T |
|
| Q |
451 |
ga |
452 |
Q |
| |
|
|| |
|
|
| T |
2760988 |
ga |
2760987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 460 - 593
Target Start/End: Complemental strand, 2770796 - 2770663
Alignment:
| Q |
460 |
tgcagagatattcagattttcaaggtgtgtcatttctgctacagcagcacttaaggaattcccatgttctcctctgacatgccttaaacctaacctcctt |
559 |
Q |
| |
|
|||| ||||||| |||| |||||||||| ||||||||||||| ||||||| ||||| ||||||||||||| ||| || ||||||| |||||||||||| |
|
|
| T |
2770796 |
tgcacagatattaagatgttcaaggtgtttcatttctgctactgcagcacataaggcgttcccatgttctcgtcttactcgccttaagcctaacctcctt |
2770697 |
T |
|
| Q |
560 |
aaattccttagcattttcatttcttgaatgagat |
593 |
Q |
| |
|
|| | ||||||||||||||| ||||||||||||| |
|
|
| T |
2770696 |
aactgccttagcattttcatctcttgaatgagat |
2770663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 187 - 446
Target Start/End: Complemental strand, 2820598 - 2820339
Alignment:
| Q |
187 |
tttattctattcaagtgtcggaggttcagtgtgttcaattttagaaaccctccatttcgaaaatgaaaaatttcaccatcatagcaattgtcccacaaac |
286 |
Q |
| |
|
|||| |||||||||| | | |||||||||| | ||||||||||||||||||||| |||||||||| |||||||||||||| ||| || |||||| | || |
|
|
| T |
2820598 |
tttactctattcaagcgactgaggttcagtctcttcaattttagaaaccctccaattcgaaaatgcaaaatttcaccatcgtaggcatcgtcccatagac |
2820499 |
T |
|
| Q |
287 |
agagattgagaagattcggtaagttttgcagtgactgcaatggatcatatttcaacataga-aaagctcagctttaccttaacaagacactcaagttttg |
385 |
Q |
| |
|
| || || || ||||| ||||||| ||| || |||| |||||||| ||||||| |||| ||||| |||||| | || |||||| |||||||||||| |
|
|
| T |
2820498 |
caaacttcagcaggttcggcaagtttttcagagattgcagtggatcatttttcaacttagataaagc-cagcttgatctccacaagagactcaagttttg |
2820400 |
T |
|
| Q |
386 |
caatccaatcgggcaacttctgtagtctacctttcaaatgtagccactgaagttggggtgg |
446 |
Q |
| |
|
||||||||| ||||| | | || ||| |||||||||| |||| |||||||||| |||| |
|
|
| T |
2820399 |
gaatccaatcaggcaatgtatctaatctggctttcaaatgaagccgctgaagttggtgtgg |
2820339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 466 - 594
Target Start/End: Complemental strand, 2820290 - 2820162
Alignment:
| Q |
466 |
gatattcagattttcaaggtgtgtcatttctgctacagcagcacttaaggaattcccatgttctcctctgacatgccttaaacctaacctccttaaattc |
565 |
Q |
| |
|
|||||| |||| |||||||||| |||||||| ||| | |||||||||||| || ||||||||||| ||| |||||||||||||||||||||||||| | | |
|
|
| T |
2820290 |
gatattaagatcttcaaggtgtttcatttctactataacagcacttaaggcatccccatgttctcttcttacatgccttaaacctaacctccttaactgc |
2820191 |
T |
|
| Q |
566 |
cttagcattttcatttcttgaatgagatc |
594 |
Q |
| |
|
||| ||||||||| || | ||||||||| |
|
|
| T |
2820190 |
tttaacattttcatctcgttaatgagatc |
2820162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 478 - 600
Target Start/End: Original strand, 2854233 - 2854355
Alignment:
| Q |
478 |
ttcaaggtgtgtcatttctgctacagcagcacttaaggaattcccatgttctcctctgacatgccttaaacctaacctccttaaattccttagcattttc |
577 |
Q |
| |
|
|||||||||| ||| ||| |||| |||||||||| || | ||||||||||| ||| |||||||||||||||||||| ||||| | ||||| ||||||| |
|
|
| T |
2854233 |
ttcaaggtgttgcatctcttctactgcagcacttatggcctccccatgttctcttcttacatgccttaaacctaaccttcttaactgccttaacattttc |
2854332 |
T |
|
| Q |
578 |
atttcttgaatgagatcaacccc |
600 |
Q |
| |
|
|| |||||||||||||| ||||| |
|
|
| T |
2854333 |
atctcttgaatgagatctacccc |
2854355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 115 - 430
Target Start/End: Original strand, 2836631 - 2836946
Alignment:
| Q |
115 |
ttcagctgggggattttttccagtgtaagatgttcaagagatagcaaagttccattctcaataatgatggaatttattctattcaagtgtcggaggttca |
214 |
Q |
| |
|
||||| || ||||| ||||||| | | | ||| |||||||| | ||||| ||| ||||| |||| ||| |||||| |||||||| ||| ||||| || |
|
|
| T |
2836631 |
ttcagttgagggatcttttccaatattatatgctcaagagaaatcaaagctcctttctctataaggatcaaatttagtctattcacgtgacggagaacca |
2836730 |
T |
|
| Q |
215 |
gtgtgttcaattttagaaaccctccatttcgaaaatgaaaaatttcaccatcatagcaattgtcccacaaacagagattgagaagattcggtaagttttg |
314 |
Q |
| |
|
|| ||||||||| |||||||| ||||| |||||| ||||||||||| || ||| ||| | || | | |||| || || | ||| || ||||||| |
|
|
| T |
2836731 |
gttctttcaatttttgaaacccttcattttcaaaatggaaaatttcaccctcgtaggtattatgcccaacagagagcttcagcaaatttggcaagttttt |
2836830 |
T |
|
| Q |
315 |
cagtgactgcaatggatcatatttcaacataga-aaagctcagctttaccttaacaagacactcaagttttgcaatccaatcgggcaacttctgtagtct |
413 |
Q |
| |
|
||||||||||| |||||||| ||||| | | || ||||| |||||||| || |||||||| ||||||||| | || ||||| ||||||||||||||||| |
|
|
| T |
2836831 |
cagtgactgcattggatcatctttcagcttggataaagc-cagctttatctcaacaagaccctcaagtttggaaacccaattaggcaacttctgtagtct |
2836929 |
T |
|
| Q |
414 |
acctttcaaatgtagcc |
430 |
Q |
| |
|
| |||||||||| |||| |
|
|
| T |
2836930 |
agctttcaaatgaagcc |
2836946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 466 - 597
Target Start/End: Complemental strand, 2760944 - 2760813
Alignment:
| Q |
466 |
gatattcagattttcaaggtgtgtcatttctgctacagcagcacttaaggaattcccatgttctcctctgacatgccttaaacctaacctccttaaattc |
565 |
Q |
| |
|
|||||| |||| |||||||||| ||| |||| ||| | ||||||||| || | |||||| |||| ||| |||||||||||||||||||| ||||| | |
|
|
| T |
2760944 |
gatattaagatcttcaaggtgtttcaattctactataacagcacttatggcctccccatgctctcttcttacatgccttaaacctaaccttcttaactga |
2760845 |
T |
|
| Q |
566 |
cttagcattttcatttcttgaatgagatcaac |
597 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||| |
|
|
| T |
2760844 |
cttaacattttcatctcttgaatgagatcaac |
2760813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 478 - 594
Target Start/End: Complemental strand, 2750713 - 2750597
Alignment:
| Q |
478 |
ttcaaggtgtgtcatttctgctacagcagcacttaaggaattcccatgttctcctctgacatgccttaaacctaacctccttaaattccttagcattttc |
577 |
Q |
| |
|
|||||||||| ||| ||| ||| |||||||||| || |||||||||||| | ||| |||||| ||||||||||| ||||||| | ||||||||||||| |
|
|
| T |
2750713 |
ttcaaggtgttgcatctcttgtactgcagcacttatggcattcccatgttcccttcttacatgctttaaacctaacttccttaactgccttagcattttc |
2750614 |
T |
|
| Q |
578 |
atttcttgaatgagatc |
594 |
Q |
| |
|
|| |||| ||||||||| |
|
|
| T |
2750613 |
atctcttcaatgagatc |
2750597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 2799634 - 2799588
Alignment:
| Q |
1 |
gtttgggccataccagtgacgaatgaatacaagaggaacatgcttga |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2799634 |
gtttgggccataccagtgacgaatgaatacaagaggaacatgcttga |
2799588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 235 - 430
Target Start/End: Complemental strand, 5414875 - 5414680
Alignment:
| Q |
235 |
cctccatttcgaaaatgaaaaatttcaccatcatagcaattgtcccacaaacagagattgagaagattcggtaagttttgcagtgactgcaatggatcat |
334 |
Q |
| |
|
||||||||| ||||||| |||| ||||||||||||| ||| ||| ||||| ||| || |||||||| |||||||||| |||||| ||| ||||||| |
|
|
| T |
5414875 |
cctccattttgaaaatgcaaaaattcaccatcataggcattctccaacaaattgagcttcagaagatttggtaagtttttcagtgatggcataggatcat |
5414776 |
T |
|
| Q |
335 |
atttcaacatagaaaagctcagctttaccttaacaagacactcaagttttgcaatccaatcgggcaacttctgtagtctacctttcaaatgtagcc |
430 |
Q |
| |
|
| ||| | | || || || | ||| || ||||||||| |||| |||| ||||||||| |||||||||| ||||||| |||||||||| |||| |
|
|
| T |
5414775 |
ctgtcagcttggataacgccatcattatctgaacaagacattcaaactttgaaatccaatcaggcaacttctctagtctagctttcaaatgaagcc |
5414680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 2771333 - 2771287
Alignment:
| Q |
1 |
gtttgggccataccagtgacgaatgaatacaagaggaacatgcttga |
47 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
2771333 |
gtttgggccatgcgagtgacgaatgaatacaagaggaacatgcttga |
2771287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 75 - 340
Target Start/End: Original strand, 2853801 - 2854066
Alignment:
| Q |
75 |
tttgagtttatgcatgtgctttatgccaatggctacctctttcagctgggggattttttccagtgtaagatgttcaagagatagcaaagttccattctca |
174 |
Q |
| |
|
||||||||||| || ||| || |||||| || |||||| ||||| ||| |||| ||||||| | | | || |||||||| | ||||| ||| ||||| |
|
|
| T |
2853801 |
tttgagtttatccaagtgtttgatgccagagggtacctccttcagttggaggatcttttccaatcttatatactcaagagaaatcaaagctcctttctct |
2853900 |
T |
|
| Q |
175 |
ataatgatggaatttattctattcaagtgtcggaggttcagtgtgttcaattttagaaaccctccatttcgaaaatgaaaaatttcaccatcatagcaat |
274 |
Q |
| |
|
|||| || |||||| ||||||||||| | ||| ||||| ||||||||| |||| ||||||||| ||||||| |||||||||||||| || || |
|
|
| T |
2853901 |
ataagaatagaatttggtctattcaagtaactgagaatcagttctttcaatttttgaaatcctccattttgaaaatgcaaaatttcaccatcgtaagcat |
2854000 |
T |
|
| Q |
275 |
tgtcccacaaacagagattgagaagattcggtaagttttgcagtgactgcaatggatcatatttca |
340 |
Q |
| |
|
|||||||| | | || || || | ||| || ||||||| |||||||||| |||||||| ||||| |
|
|
| T |
2854001 |
cgtcccacacagatagcttcagtaaatttggcaagttttttagtgactgcattggatcatctttca |
2854066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 506 - 594
Target Start/End: Original strand, 2837051 - 2837139
Alignment:
| Q |
506 |
gcacttaaggaattcccatgttctcctctgacatgccttaaacctaacctccttaaattccttagcattttcatttcttgaatgagatc |
594 |
Q |
| |
|
|||||||||| |||||||||||||| | | |||||||||||||||||| ||| ||| | ||||| ||||| ||| |||| ||| ||||| |
|
|
| T |
2837051 |
gcacttaaggcattcccatgttctctttttacatgccttaaacctaacttccataattgccttaacatttccatctcttcaataagatc |
2837139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 385
Target Start/End: Complemental strand, 2809384 - 2809107
Alignment:
| Q |
108 |
tacctctttcagctgggggattttttccagtgtaagatgttcaagagatagcaaagttccattctcaataatgatggaatttattctattcaagtgtcgg |
207 |
Q |
| |
|
|||||| ||||||||||| ||| | |||| ||||||| ||||||||| | ||||||||| | || |||| || | || || |||||||||| | | | |
|
|
| T |
2809384 |
tacctccttcagctggggtattctgtccatggtaagatattcaagagagatcaaagttccttcgtctataaggacagtatgtactctattcaagcgactg |
2809285 |
T |
|
| Q |
208 |
aggttcagtgtgttcaattttagaaaccctccatttcgaaaatgaaaaatttcaccatcatagcaattgtcccacaaacagagattgagaagattcggta |
307 |
Q |
| |
|
|| | ||| | ||||||||| |||||| ||||| ||||||| |||||||||||||||||| |||||||| | || || || | | || || | |
|
|
| T |
2809284 |
agatctagtttcctcaattttaaaaacccgccattctgaaaatgtaaaatttcaccatcataggcgttgtcccatagaccgaatttcaacaaatatggca |
2809185 |
T |
|
| Q |
308 |
agttttgcagtgactgcaatggatcatatttcaacataga-aaagctcagctttaccttaacaagacactcaagttttg |
385 |
Q |
| |
|
|||||| ||||||||| |||||||||| ||||||| ||| ||||| |||||||| || ||||||| |||| ||||||| |
|
|
| T |
2809184 |
agtttttcagtgactgtaatggatcatttttcaactgagataaagc-cagctttatctcaacaagatactccagttttg |
2809107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 2792583 - 2792541
Alignment:
| Q |
5 |
gggccataccagtgacgaatgaatacaagaggaacatgcttga |
47 |
Q |
| |
|
||||||| | ||||||||| ||||||||||||||||||||||| |
|
|
| T |
2792583 |
gggccatgcgagtgacgaacgaatacaagaggaacatgcttga |
2792541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 52 - 452
Target Start/End: Original strand, 4117 - 4517
Alignment:
| Q |
52 |
ggcatatcagtgaagtaaatatctttgagtttatgcatgtgctttatgccaatggctacctctttcagctgggggattttttccagtgtaagatgttcaa |
151 |
Q |
| |
|
||||||||||||| |||||| |||||||| ||||||||| |||| |||||| || |||||| |||| ||||||||| |||||||| |||||||||||| |
|
|
| T |
4117 |
ggcatatcagtgatgtaaatgtctttgaggttatgcatgggcttgatgccagagggtacctccttcaattgggggattatttccagtctaagatgttcaa |
4216 |
T |
|
| Q |
152 |
gagatagcaaagttccattctcaataatgatggaatttattctattcaagtgtcggaggttcagtgtgttcaattttagaaaccctccatttcgaaaatg |
251 |
Q |
| |
|
|||| |||||| ||||| || |||| |||||||||| | || ||||| | | || |||||||| |||||||| ||| |||||| || ||||||| |
|
|
| T |
4217 |
gagaaagcaaacatccatggtctataacaatggaatttactttactcaagcgactaagattcagtgtcatcaattttttaaatcctccactttgaaaatg |
4316 |
T |
|
| Q |
252 |
aaaaatttcaccatcatagcaattgtcccacaaacagagattgagaagattcggtaagttttgcagtgactgcaatggatcatatttcaacatagaaaag |
351 |
Q |
| |
|
|||| ||| ||||||||| ||||||||||||| |||| || | ||||| || ||||||| ||||||||||| |||||| | ||||| | | || || |
|
|
| T |
4317 |
caaaacttcgccatcataggcattgtcccacaaagagagcttcaacagatttggcaagtttttcagtgactgcattggatcgtctttcagcttggataaa |
4416 |
T |
|
| Q |
352 |
ctcagctttaccttaacaagacactcaagttttgcaatccaatcgggcaacttctgtagtctacctttcaaatgtagccactgaagttggggtggggatg |
451 |
Q |
| |
|
| | | ||| |||||||||| |||| ||||||| ||||||||| || ||| ||| || ||| |||||||||| || | |||||||| ||||||||||| |
|
|
| T |
4417 |
cctaaccttatcttaacaagaaactcgagttttggaatccaatcaggtaacctctctaatctggctttcaaatgaagtcgctgaagtttgggtggggatg |
4516 |
T |
|
| Q |
452 |
a |
452 |
Q |
| |
|
| |
|
|
| T |
4517 |
a |
4517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 506 - 594
Target Start/End: Original strand, 4600 - 4688
Alignment:
| Q |
506 |
gcacttaaggaattcccatgttctcctctgacatgccttaaacctaacctccttaaattccttagcattttcatttcttgaatgagatc |
594 |
Q |
| |
|
|||||||||| || | |||||||| ||| |||||||||||||||||| ||||||| | |||||| |||||||| |||| ||||||||| |
|
|
| T |
4600 |
gcacttaaggcatggctatgttctcttcttacatgccttaaacctaacttccttaactgccttagtattttcatctcttcaatgagatc |
4688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 74 - 425
Target Start/End: Original strand, 11115753 - 11116102
Alignment:
| Q |
74 |
ctttgagtttatgcatgtgctttatgccaatggctacctctttcagctgggggattttttccagtgtaagatgttcaagagatagcaaagttccattctc |
173 |
Q |
| |
|
|||||||||||| || ||| || |||||| || |||| | || || |||||||| ||||||| | |||||||||||||||| ||||||| ||| ||||| |
|
|
| T |
11115753 |
ctttgagtttatccaagtgtttgatgccagagggtaccacctttagttgggggatcttttccaatttaagatgttcaagagagagcaaagctcctttctc |
11115852 |
T |
|
| Q |
174 |
aataatgatggaatttattctattcaagtgtcggaggttcagtgtgttcaattttagaaaccctccatttcgaaaatgaaaaatttcaccatcatagcaa |
273 |
Q |
| |
|
|||| ||| ||| | || |||||||| | || ||||| ||| ||||| |||| ||||||| | ||||||| ||| ||||||||| || | |
|
|
| T |
11115853 |
tataaggatatgattcactccattcaagtaactaagaatcagttatttccatttttgaaatcctccatcttgaaaatgcaaatgatcaccatcacaggca |
11115952 |
T |
|
| Q |
274 |
ttgtcccacaaacagagattgagaagattcggtaagttttgcagtgactgcaatggatcatatttcaacataga-aaagctcagctttaccttaacaaga |
372 |
Q |
| |
|
|| ||||||| | ||| || || ||||| || ||||||| ||||||||||| |||||||| ||||| | | || |||||| ||| ||| || ||||| | |
|
|
| T |
11115953 |
ttctcccacaga--gagcttcagcagatttggcaagtttttcagtgactgcattggatcatctttcagcttggataaagct-agccttatctaaacaata |
11116049 |
T |
|
| Q |
373 |
cactcaagttttgcaatccaatcgggcaacttctgtagtctacctttcaaatg |
425 |
Q |
| |
|
|||||||| |||| ||||||||| |||||||| | |||||| |||||||||| |
|
|
| T |
11116050 |
cactcaagatttggaatccaatcaggcaacttatcaagtctagctttcaaatg |
11116102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 460 - 548
Target Start/End: Complemental strand, 31681650 - 31681562
Alignment:
| Q |
460 |
tgcagagatattcagattttcaaggtgtgtcatttctgctacagcagcacttaaggaattcccatgttctcctctgacatgccttaaac |
548 |
Q |
| |
|
||||| |||||| ||||||||||||||| || ||||| | | || |||| || || |||||| ||||||| ||| ||||||||||||| |
|
|
| T |
31681650 |
tgcagtgatattaagattttcaaggtgtttcgtttctacgattgctgcacatacggcattcccgtgttctcttcttacatgccttaaac |
31681562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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