View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16638_low_64 (Length: 250)

Name: NF16638_low_64
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16638_low_64
NF16638_low_64
[»] chr1 (7 HSPs)
chr1 (10-250)||(28053752-28053974)
chr1 (151-214)||(32353873-32353936)
chr1 (162-226)||(17921596-17921660)
chr1 (151-218)||(38231184-38231251)
chr1 (152-219)||(36305281-36305348)
chr1 (152-226)||(36928657-36928731)
chr1 (155-214)||(48074012-48074072)
[»] chr2 (7 HSPs)
chr2 (151-248)||(31086212-31086307)
chr2 (157-248)||(32145370-32145461)
chr2 (153-226)||(45421007-45421080)
chr2 (151-204)||(43627009-43627062)
chr2 (151-219)||(35694129-35694197)
chr2 (151-220)||(26681376-26681445)
chr2 (25-65)||(12647972-12648012)
[»] chr7 (10 HSPs)
chr7 (148-245)||(12383150-12383247)
chr7 (149-249)||(3104369-3104469)
chr7 (151-218)||(30385697-30385764)
chr7 (151-218)||(3632300-3632367)
chr7 (153-226)||(15654283-15654356)
chr7 (151-208)||(28326863-28326920)
chr7 (152-226)||(21277627-21277701)
chr7 (162-236)||(38729983-38730057)
chr7 (155-214)||(13439553-13439613)
chr7 (25-65)||(46818435-46818475)
[»] chr8 (4 HSPs)
chr8 (151-218)||(16421584-16421651)
chr8 (151-226)||(35405233-35405308)
chr8 (152-208)||(2871699-2871755)
chr8 (152-209)||(12220709-12220766)
[»] chr6 (7 HSPs)
chr6 (151-218)||(15673322-15673389)
chr6 (151-220)||(8873402-8873471)
chr6 (154-218)||(23348045-23348109)
chr6 (151-218)||(13754963-13755030)
chr6 (163-218)||(14003427-14003482)
chr6 (162-220)||(1682538-1682596)
chr6 (162-218)||(33629598-33629654)
[»] chr5 (3 HSPs)
chr5 (155-220)||(6264780-6264845)
chr5 (154-216)||(32917816-32917878)
chr5 (155-214)||(34858273-34858333)
[»] scaffold0287 (1 HSPs)
scaffold0287 (151-218)||(13718-13785)
[»] chr4 (5 HSPs)
chr4 (151-218)||(33312896-33312963)
chr4 (151-214)||(20673210-20673273)
chr4 (153-226)||(7663816-7663889)
chr4 (153-214)||(12776786-12776847)
chr4 (155-214)||(55298123-55298183)
[»] chr3 (9 HSPs)
chr3 (151-218)||(2814076-2814143)
chr3 (151-214)||(23601274-23601337)
chr3 (151-218)||(29308905-29308972)
chr3 (155-213)||(6517953-6518011)
chr3 (151-240)||(9378571-9378660)
chr3 (153-226)||(30167923-30167996)
chr3 (151-218)||(6177054-6177121)
chr3 (163-220)||(13447977-13448034)
chr3 (25-65)||(49552243-49552283)
[»] scaffold0418 (1 HSPs)
scaffold0418 (153-226)||(7164-7237)


Alignment Details
Target: chr1 (Bit Score: 154; Significance: 9e-82; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 28053752 - 28053974
Alignment:
Q  10 atatgaaccacacatacaccgcaacacaacgagaaatcaaacaacgtcgcacaagagtacggaatcatgaagatgataaatctagatatatataaaaatc 109  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  28053752 atatgaaccacacatacaccgcaacactacgagaaatcaaacaatgtcgcacaagagtacgaaatcatgaagatgataaatctagatatatgtaaaaatc 28053851  T
Q  110 acgtatttagattagtatacgtatttagattatatatcttctgtttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgct 209  Q
    ||||                  |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28053852 acgt------------------atttagattatatatcctctgtttgtaatcgttgtaactcttgatttctgcagtagtctctaaggtacaccttgtgct 28053933  T
Q  210 tttgggactgctctgttttagttatataatttcattttgac 250  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  28053934 tttgggactgctctgttttagttatataattttattttgac 28053974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 32353873 - 32353936
Alignment:
Q  151 tgtttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgg 214  Q
    ||||||||| |||||||||||||| ||||||  ||||||||||||| ||||||||||| |||||    
T  32353873 tgtttgtaaccgttgtaactcttggtttttgaggtagtctctaaggcacaccttgtgcgtttgg 32353936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 17921596 - 17921660
Alignment:
Q  162 gttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggactgctctgtt 226  Q
    ||||||||||||| ||| || |||||||||||||| |||||||||||| | ||||||||| ||||    
T  17921596 gttgtaactcttggtttctgtagtagtctctaaggcacaccttgtgctctagggactgctttgtt 17921660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 38231251 - 38231184
Alignment:
Q  151 tgtttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggact 218  Q
    ||||||||| |||||||||||||| ||| ||  || |||||||||| ||||||||||| |||||||||    
T  38231251 tgtttgtaaccgttgtaactcttggtttctgatgttgtctctaaggcacaccttgtgcgtttgggact 38231184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 219
Target Start/End: Complemental strand, 36305348 - 36305281
Alignment:
Q  152 gtttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggactg 219  Q
    ||||||||| ||||||||||||| ||  ||  ||||||||||||| |||||||||||| | |||||||    
T  36305348 gtttgtaattgttgtaactcttggttcctgtggtagtctctaaggcacaccttgtgctctagggactg 36305281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 226
Target Start/End: Complemental strand, 36928731 - 36928657
Alignment:
Q  152 gtttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggactgctctgtt 226  Q
    ||||||||| ||||||||||||| ||  |   ||||||||||||| |||||||||||| | ||||||||| ||||    
T  36928731 gtttgtaattgttgtaactcttggttcctatggtagtctctaaggcacaccttgtgctctagggactgctttgtt 36928657  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 48074012 - 48074072
Alignment:
Q  155 tgtaatcgttgtaactcttgatttttgcagtagtctct-aaggtacaccttgtgcttttgg 214  Q
    |||||||||||||||||||| ||| ||  ||||||||| |||| ||||||||||| |||||    
T  48074012 tgtaatcgttgtaactcttggtttctgaggtagtctctaaaggcacaccttgtgcgtttgg 48074072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 151 - 248
Target Start/End: Original strand, 31086212 - 31086307
Alignment:
Q  151 tgtttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggactgctctgttttagttatataatttcattttg 248  Q
    |||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  31086212 tgtttgtaatcgttgtaactcttggtttctgaagtagtctctaaggtacaccttgtgcttttgggactgctctg-tttag-tatataatttcattttg 31086307  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 157 - 248
Target Start/End: Complemental strand, 32145461 - 32145370
Alignment:
Q  157 taatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggactgctctgttttagttatataatttcattttg 248  Q
    |||| ||||||||||||||||| ||||||||| ||||||| |||||||||||||| ||||||||| || ||||||||||||||| |||||||    
T  32145461 taattgttgtaactcttgatttctgcagtagtttctaaggcacaccttgtgctttcgggactgctatgctttagttatataattccattttg 32145370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 45421080 - 45421007
Alignment:
Q  153 tttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggactgctctgtt 226  Q
    |||||| | ||||||||||||| ||  || |||||||||||||| |||||||||||||| ||||||||| ||||    
T  45421080 tttgtatttgttgtaactcttggttcctgtagtagtctctaaggcacaccttgtgctttagggactgctttgtt 45421007  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 43627062 - 43627009
Alignment:
Q  151 tgtttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacacctt 204  Q
    ||||||||| |||||||||||||| ||||||  ||||||||||||| |||||||    
T  43627062 tgtttgtaaccgttgtaactcttggtttttgtggtagtctctaaggcacacctt 43627009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 35694197 - 35694129
Alignment:
Q  151 tgtttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggactg 219  Q
    ||||||||| |||||||||||||| ||| ||  ||||||||||||| |||| |||||| |||| |||||    
T  35694197 tgtttgtaaccgttgtaactcttggtttctgaggtagtctctaaggcacactttgtgcgtttgagactg 35694129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 26681445 - 26681376
Alignment:
Q  151 tgtttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggactgc 220  Q
    ||||||||| |||||||||||||| ||| ||  ||| ||||||||  ||||||||||| |||| ||||||    
T  26681445 tgtttgtaaccgttgtaactcttggtttctgaggtaatctctaagacacaccttgtgcgtttgagactgc 26681376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 12647972 - 12648012
Alignment:
Q  25 acaccgcaacacaacgagaaatcaaacaacgtcgcacaaga 65  Q
    |||||||||||  |||||||||||||||||| |||||||||    
T  12647972 acaccgcaacaagacgagaaatcaaacaacgccgcacaaga 12648012  T

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Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 148 - 245
Target Start/End: Original strand, 12383150 - 12383247
Alignment:
Q  148 ttctgtttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggactgctctgttttagttatataatttcatt 245  Q
    ||||| |||||||| |||||||||||| ||  ||||||||| || |||| ||||||||||| ||||| ||||||||||||||||||||||||| ||||    
T  12383150 ttctggttgtaatctttgtaactcttggttcctgcagtagtttccaaggcacaccttgtgcatttggaactgctctgttttagttatataattccatt 12383247  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 249
Target Start/End: Complemental strand, 3104469 - 3104369
Alignment:
Q  149 tctgtttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggactgctctgttttagttatataatttcattttg 248  Q
    |||||||| ||||||||||||||||| ||| |||| |||||||||||| |||| ||||||||| ||||    ||| |||||||||||||||| |||||||    
T  3104469 tctgtttgcaatcgttgtaactcttggtttctgcaatagtctctaaggcacactttgtgctttcgggatcattctcttttagttatataattccattttg 3104370  T
Q  249 a 249  Q
    |    
T  3104369 a 3104369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 30385764 - 30385697
Alignment:
Q  151 tgtttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggact 218  Q
    ||||||||| |||||||||||||| ||| ||  ||||||||||||| ||||||||||| |||||||||    
T  30385764 tgtttgtaaccgttgtaactcttggtttctgatgtagtctctaaggcacaccttgtgcgtttgggact 30385697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 3632367 - 3632300
Alignment:
Q  151 tgtttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggact 218  Q
    |||||||||| ||||||||||||  ||||||  ||||||||||||| ||||||||| | |||||||||    
T  3632367 tgtttgtaattgttgtaactcttagtttttgaggtagtctctaaggcacaccttgtacgtttgggact 3632300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 15654283 - 15654356
Alignment:
Q  153 tttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggactgctctgtt 226  Q
    |||||||| ||||||||||||| ||  || |||||||||||||  |||||||||||| | ||||||||| ||||    
T  15654283 tttgtaattgttgtaactcttggttcctgtagtagtctctaagacacaccttgtgctctagggactgctttgtt 15654356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 28326920 - 28326863
Alignment:
Q  151 tgtttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgc 208  Q
    ||||||||| |||||||||||||| ||| ||  ||||||||||||| |||||||||||    
T  28326920 tgtttgtaaccgttgtaactcttggtttctgtggtagtctctaaggcacaccttgtgc 28326863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 226
Target Start/End: Original strand, 21277627 - 21277701
Alignment:
Q  152 gtttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggactgctctgtt 226  Q
    ||||||||| ||||||||||||| ||  ||  ||||| ||||||| |||||||||||| | ||||||||| ||||    
T  21277627 gtttgtaattgttgtaactcttggttcctgtggtagtgtctaaggcacaccttgtgctctagggactgctttgtt 21277701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 38730057 - 38729983
Alignment:
Q  162 gttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggactgctctgttttagttatat 236  Q
    |||||||||||||  ||||||||||||||||  | || ||||| ||| |||||| ||||||||||| ||| ||||    
T  38730057 gttgtaactcttggattttgcagtagtctctcggatataccttatgcctttggggctgctctgtttcagtaatat 38729983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 13439613 - 13439553
Alignment:
Q  155 tgtaatcgttgtaactcttgatttttgcagtagtctct-aaggtacaccttgtgcttttgg 214  Q
    |||||||||||||||||||| ||| ||  ||||||||| |||| ||||||||||| |||||    
T  13439613 tgtaatcgttgtaactcttggtttctgaggtagtctctaaaggcacaccttgtgcgtttgg 13439553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 46818435 - 46818475
Alignment:
Q  25 acaccgcaacacaacgagaaatcaaacaacgtcgcacaaga 65  Q
    |||||||||||  |||||||||||||||||| |||||||||    
T  46818435 acaccgcaacaatacgagaaatcaaacaacgccgcacaaga 46818475  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 16421584 - 16421651
Alignment:
Q  151 tgtttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggact 218  Q
    ||||||||| |||||||||||||| ||| ||  ||||||||||||| ||| |||||||||||||||||    
T  16421584 tgtttgtaaccgttgtaactcttggtttctgaggtagtctctaaggcacatcttgtgcttttgggact 16421651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 226
Target Start/End: Complemental strand, 35405308 - 35405233
Alignment:
Q  151 tgtttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggactgctctgtt 226  Q
    ||||||||| |||||||||||||| ||| ||  |||||||||||||||||||||||   ||||||||||| |||||    
T  35405308 tgtttgtaaccgttgtaactcttggtttctgatgtagtctctaaggtacaccttgtatgtttgggactgccctgtt 35405233  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 2871755 - 2871699
Alignment:
Q  152 gtttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgc 208  Q
    |||||||| |||||||||||||||||||||  ||||||||||||| ||| |||||||    
T  2871755 gtttgtaaccgttgtaactcttgatttttgtggtagtctctaaggcacatcttgtgc 2871699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 12220709 - 12220766
Alignment:
Q  152 gtttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgct 209  Q
    ||||||||| ||||||||||||||||  ||  ||||||||||||| ||||||||||||    
T  12220709 gtttgtaattgttgtaactcttgattcctgtggtagtctctaaggcacaccttgtgct 12220766  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 15673389 - 15673322
Alignment:
Q  151 tgtttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggact 218  Q
    ||||||||| |||||||||||||||||| ||  ||||||||||| | ||||||||||| |||||||||    
T  15673389 tgtttgtaaacgttgtaactcttgatttctgaggtagtctctaacgcacaccttgtgcgtttgggact 15673322  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 8873402 - 8873471
Alignment:
Q  151 tgtttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggactgc 220  Q
    ||||||||| |||||||||||||  ||| ||  ||||||||||||| ||||||||||| |||||||||||    
T  8873402 tgtttgtaaccgttgtaactcttagtttctgaggtagtctctaaggcacaccttgtgcgtttgggactgc 8873471  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 23348045 - 23348109
Alignment:
Q  154 ttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggact 218  Q
    ||||||| ||||||||||| | ||| ||  ||||||||||||| ||||||||||| |||||||||    
T  23348045 ttgtaattgttgtaactctcgttttctgaggtagtctctaaggcacaccttgtgcgtttgggact 23348109  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 13755030 - 13754963
Alignment:
Q  151 tgtttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggact 218  Q
    ||||||||| |||||||||||||| ||| ||  ||||||||||||| | | ||||||| |||||||||    
T  13755030 tgtttgtaaccgttgtaactcttggtttctgaggtagtctctaaggcatatcttgtgcgtttgggact 13754963  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 14003427 - 14003482
Alignment:
Q  163 ttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggact 218  Q
    |||||||||||||||| ||  ||||||||||||| ||||||||||| |||| ||||    
T  14003427 ttgtaactcttgatttctgaggtagtctctaaggcacaccttgtgcgtttgagact 14003482  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 1682596 - 1682538
Alignment:
Q  162 gttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggactgc 220  Q
    ||||||||||||| || ||| ||||||||||| || |||||||||||||| || |||||    
T  1682596 gttgtaactcttggttcttgtagtagtctctatggcacaccttgtgctttaggcactgc 1682538  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 33629654 - 33629598
Alignment:
Q  162 gttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggact 218  Q
    ||||||||||||| || |||  |||||||||| || |||||||||||||| ||||||    
T  33629654 gttgtaactcttggttcttgttgtagtctctatggcacaccttgtgctttagggact 33629598  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 6264780 - 6264845
Alignment:
Q  155 tgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggactgc 220  Q
    |||||||||||||||||||| ||| ||  ||||||||||||| ||||||||| | |||||||||||    
T  6264780 tgtaatcgttgtaactcttggtttctgaggtagtctctaaggcacaccttgtacgtttgggactgc 6264845  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 32917878 - 32917816
Alignment:
Q  154 ttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttggga 216  Q
    |||||| | ||||||||||||||||| |  |||||||||| || ||||||||||| |||||||    
T  32917878 ttgtaacccttgtaactcttgattttggaggtagtctctagggcacaccttgtgcgtttggga 32917816  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 34858273 - 34858333
Alignment:
Q  155 tgtaatcgttgtaactcttgatttttgcagtagtctct-aaggtacaccttgtgcttttgg 214  Q
    |||||||||||||||||||| ||| ||  ||||||||| |||| ||||||||||| |||||    
T  34858273 tgtaatcgttgtaactcttggtttctgaggtagtctctaaaggcacaccttgtgcgtttgg 34858333  T

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Target: scaffold0287 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 13718 - 13785
Alignment:
Q  151 tgtttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggact 218  Q
    |||||||||| ||||||||||||  ||||||  ||||||||||||| ||||||||| | |||||||||    
T  13718 tgtttgtaattgttgtaactcttagtttttgaggtagtctctaaggcacaccttgtacgtttgggact 13785  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 33312963 - 33312896
Alignment:
Q  151 tgtttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggact 218  Q
    |||||||||||||| ||||||||||||  ||  ||||||||||||| ||||||||| | |||||||||    
T  33312963 tgtttgtaatcgttataactcttgattcctgaggtagtctctaaggcacaccttgtacgtttgggact 33312896  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 20673273 - 20673210
Alignment:
Q  151 tgtttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgg 214  Q
    |||||||||||||||||||||||| ||  ||  ||||||||| ||| ||||||||||| |||||    
T  20673273 tgtttgtaatcgttgtaactcttggttcctgaggtagtctcttaggcacaccttgtgcgtttgg 20673210  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 7663816 - 7663889
Alignment:
Q  153 tttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggactgctctgtt 226  Q
    |||||| | ||||||||||||| ||  || |||||||||||||| ||||||| |||||| |||| |||| ||||    
T  7663816 tttgtatttgttgtaactcttggttcctgtagtagtctctaaggcacaccttatgctttagggattgctttgtt 7663889  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 12776786 - 12776847
Alignment:
Q  153 tttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgg 214  Q
    |||||||||||||||||||||| ||  ||  ||||||||| ||| ||||||||||| |||||    
T  12776786 tttgtaatcgttgtaactcttggttcctgaggtagtctcttaggcacaccttgtgcgtttgg 12776847  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 55298183 - 55298123
Alignment:
Q  155 tgtaatcgttgtaactcttgatttttgcagtagtctct-aaggtacaccttgtgcttttgg 214  Q
    |||||||||||||||||||| ||| ||  ||||||||| |||| ||||||||||| |||||    
T  55298183 tgtaatcgttgtaactcttggtttctgaggtagtctctaaaggcacaccttgtgcgtttgg 55298123  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 2814076 - 2814143
Alignment:
Q  151 tgtttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggact 218  Q
    ||||||||| |||||||||||||| ||| ||  ||||||||||||  ||||||||||| |||||||||    
T  2814076 tgtttgtaaccgttgtaactcttggtttctgaggtagtctctaagacacaccttgtgcgtttgggact 2814143  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 23601337 - 23601274
Alignment:
Q  151 tgtttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgg 214  Q
    ||||||||| |||||||||||||| ||| ||  ||||||||||||| ||||||||||| |||||    
T  23601337 tgtttgtaaccgttgtaactcttggtttctgaggtagtctctaaggcacaccttgtgcgtttgg 23601274  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 29308972 - 29308905
Alignment:
Q  151 tgtttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggact 218  Q
    ||||||||| |||||||||||||| ||| ||  ||||||||||||| ||| ||||||| |||||||||    
T  29308972 tgtttgtaaccgttgtaactcttggtttctgaggtagtctctaaggcacatcttgtgcgtttgggact 29308905  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 6517953 - 6518011
Alignment:
Q  155 tgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttg 213  Q
    ||||| |||||||| ||||||||||||  ||||||||||||| ||||||||||| ||||    
T  6517953 tgtaaccgttgtaattcttgatttttgaggtagtctctaaggcacaccttgtgcgtttg 6518011  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 240
Target Start/End: Complemental strand, 9378660 - 9378571
Alignment:
Q  151 tgtttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggactgctctgttttagttatataatt 240  Q
    |||||||||  |||| |||||||| ||| || || |||||  |||| |||| ||||||||| |||| || ||||||||||||||||||||    
T  9378660 tgtttgtaactgttgaaactcttggtttctgaagaagtcttcaaggcacacattgtgctttcgggattggtctgttttagttatataatt 9378571  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 30167923 - 30167996
Alignment:
Q  153 tttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggactgctctgtt 226  Q
    |||||| | ||||||||||||| ||  || |||||| ||||||| |||||||||||||| ||||||||| ||||    
T  30167923 tttgtatttgttgtaactcttggttcgtgtagtagtttctaaggcacaccttgtgctttagggactgctttgtt 30167996  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 6177054 - 6177121
Alignment:
Q  151 tgtttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggact 218  Q
    |||||||||| ||||||||||||| ||| ||  ||||||||||||| ||| ||||||| |||| ||||    
T  6177054 tgtttgtaattgttgtaactcttggtttctgaggtagtctctaaggcacatcttgtgcatttgagact 6177121  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 13448034 - 13447977
Alignment:
Q  163 ttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggactgc 220  Q
    |||||||||||| ||  ||| |||||||||| || |||||||||||||| ||||||||    
T  13448034 ttgtaactcttggttcctgctgtagtctctatggcacaccttgtgctttagggactgc 13447977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 49552243 - 49552283
Alignment:
Q  25 acaccgcaacacaacgagaaatcaaacaacgtcgcacaaga 65  Q
    ||||||||| | ||||||||||||||||||| |||||||||    
T  49552243 acaccgcaagaaaacgagaaatcaaacaacgccgcacaaga 49552283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 7237 - 7164
Alignment:
Q  153 tttgtaatcgttgtaactcttgatttttgcagtagtctctaaggtacaccttgtgcttttgggactgctctgtt 226  Q
    |||||| | ||||||||||||| ||  || |||||||||||||| ||||||| |||||| |||| |||| ||||    
T  7237 tttgtatttgttgtaactcttggttcctgtagtagtctctaaggcacaccttatgctttagggattgctttgtt 7164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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