View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16638_low_68 (Length: 241)

Name: NF16638_low_68
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16638_low_68
NF16638_low_68
[»] chr6 (2 HSPs)
chr6 (20-232)||(19777292-19777503)
chr6 (34-122)||(19785263-19785351)
[»] chr7 (2 HSPs)
chr7 (34-170)||(8332016-8332152)
chr7 (20-140)||(17020771-17020891)
[»] chr1 (1 HSPs)
chr1 (34-170)||(40770927-40771063)
[»] scaffold0003 (1 HSPs)
scaffold0003 (29-141)||(119152-119264)
[»] chr5 (2 HSPs)
chr5 (20-135)||(143793-143908)
chr5 (20-135)||(18059500-18059615)
[»] scaffold0014 (1 HSPs)
scaffold0014 (33-73)||(133950-133990)
[»] chr4 (2 HSPs)
chr4 (33-73)||(26229292-26229332)
chr4 (33-73)||(33548792-33548832)


Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 19777503 - 19777292
Alignment:
Q  20 ggcattagtatagatttgttaaattcaacttcatgattatttccataaccatctatcaaggtccaatgttcttgaagttcatcataaagttcagcaataa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19777503 ggcattagtatagatttgttaaattcaacttcatgattatttccataaccatctatcaaggtccaatgttcttgaagttcatcataaagttcagcaataa 19777404  T
Q  120 taagcggatctaattcgcaaattatctgtgttataaagaaaataatgttagcataatgataacagaaaatgtattnnnnnnntatgtatttaaaaggagt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |       |||||| |||||||||||    
T  19777403 taagcggatctaattcgcaaattatctgtgttataaagaaaataatgttagcataatgataacaaaaaaagta-taaaaaaatatgtagttaaaaggagt 19777305  T
Q  220 aatacctctgtgc 232  Q
    |||||||||||||    
T  19777304 aatacctctgtgc 19777292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 19785351 - 19785263
Alignment:
Q  34 tttgttaaattcaacttcatgattatttccataaccatctatcaaggtccaatgttcttgaagttcatcataaagttcagcaataataa 122  Q
    |||||||||||||||||||||| |||||||||| ||||||||||| ||||||  |  ||| |||||||  |||||||||| || |||||    
T  19785351 tttgttaaattcaacttcatgactatttccatacccatctatcaatgtccaagttggttgtagttcattgtaaagttcagaaacaataa 19785263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 170
Target Start/End: Original strand, 8332016 - 8332152
Alignment:
Q  34 tttgttaaattcaacttcatgattatttccataaccatctatcaaggtccaatgttcttgaagttcatcataaagttcagcaataataagcggatctaat 133  Q
    |||||||||||||||||||||| ||||  |||| ||||||||||||||| | |  |||||||||||||||||||| ||||||||||| || ||||||| |    
T  8332016 tttgttaaattcaacttcatgactattcacatatccatctatcaaggtcaattcatcttgaagttcatcataaaggtcagcaataattaggggatctagt 8332115  T
Q  134 tcgcaaattatctgtgttataaagaaaataatgttag 170  Q
    || ||||| ||||||| |||||  |||| ||||||||    
T  8332116 tcacaaataatctgtgatataattaaaacaatgttag 8332152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 17020891 - 17020771
Alignment:
Q  20 ggcattagtatagatttgttaaattcaacttcatgattatttccataaccatctatcaaggtccaatgttcttgaagttcatcataaagttcagcaataa 119  Q
    ||||| ||||||||||||||||||||||||||||||  ||||||  ||||||| | ||||||||| ||||  | |||||||||| ||||||||||||||     
T  17020891 ggcatgagtatagatttgttaaattcaacttcatgaacatttcccaaaccatcaaccaaggtccattgttgatcaagttcatcaaaaagttcagcaatag 17020792  T
Q  120 taagcggatctaattcgcaaa 140  Q
    |||  | ||||||||||||||    
T  17020791 taatggaatctaattcgcaaa 17020771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 170
Target Start/End: Complemental strand, 40771063 - 40770927
Alignment:
Q  34 tttgttaaattcaacttcatgattatttccataaccatctatcaaggtccaatgttcttgaagttcatcataaagttcagcaataataagcggatctaat 133  Q
    |||||||||||||||||||||| ||||  |||| ||||||||||||||| | |  |||||||||||||||||||| ||||||||||| || ||||||| |    
T  40771063 tttgttaaattcaacttcatgactattcacatatccatctatcaaggtcaattcatcttgaagttcatcataaaggtcagcaataattaggggatctagt 40770964  T
Q  134 tcgcaaattatctgtgttataaagaaaataatgttag 170  Q
    || ||||| ||||||| |||||  |||| ||||||||    
T  40770963 tcacaaataatctgtgatataattaaaacaatgttag 40770927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 141
Target Start/End: Original strand, 119152 - 119264
Alignment:
Q  29 atagatttgttaaattcaacttcatgattatttccataaccatctatcaaggtccaatgttcttgaagttcatcataaagttcagcaataataagcggat 128  Q
    |||||||||||||||||||||||||||  ||||||  ||||||| | ||||||||| ||||  | |||||||||| |||||||||||||  |||  ||||    
T  119152 atagatttgttaaattcaacttcatgaacatttcccaaaccatcaaccaaggtccattgttgatcaagttcatcaaaaagttcagcaatggtaatgggat 119251  T
Q  129 ctaattcgcaaat 141  Q
    |||||||||||||    
T  119252 ctaattcgcaaat 119264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 143793 - 143908
Alignment:
Q  20 ggcattagtatagatttgttaaattcaacttcatgattatttccataaccatctatcaaggtccaatgttcttgaagttcatcataaagttcagcaataa 119  Q
    ||||| || |||||||||||||||||||||||||||  |||| |  ||||||| || || ||||| || || | |||||||||| ||||||||||||||     
T  143793 ggcatgagcatagatttgttaaattcaacttcatgaacatttgctaaaccatcaattaatgtccattggtcatcaagttcatcaaaaagttcagcaatag 143892  T
Q  120 taagcggatctaattc 135  Q
    |||| || ||||||||    
T  143893 taagggggtctaattc 143908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 18059500 - 18059615
Alignment:
Q  20 ggcattagtatagatttgttaaattcaacttcatgattatttccataaccatctatcaaggtccaatgttcttgaagttcatcataaagttcagcaataa 119  Q
    ||||| || |||||||||||||||||||||||||||  |||| |  ||||||| || || ||||| || || | |||||||||| ||||||||||||||     
T  18059500 ggcatgagcatagatttgttaaattcaacttcatgaacatttgctaaaccatcaattaatgtccattggtcatcaagttcatcaaaaagttcagcaatag 18059599  T
Q  120 taagcggatctaattc 135  Q
    |||| || ||||||||    
T  18059600 taagggggtctaattc 18059615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 133990 - 133950
Alignment:
Q  33 atttgttaaattcaacttcatgattatttccataaccatct 73  Q
    |||||||||||| ||||| ||||||||||||||||| ||||    
T  133990 atttgttaaattgaacttgatgattatttccataacaatct 133950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 26229332 - 26229292
Alignment:
Q  33 atttgttaaattcaacttcatgattatttccataaccatct 73  Q
    |||||||||||| ||||| |||| |||||||||||||||||    
T  26229332 atttgttaaattgaacttgatgactatttccataaccatct 26229292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 33548832 - 33548792
Alignment:
Q  33 atttgttaaattcaacttcatgattatttccataaccatct 73  Q
    |||||||||||| ||||| |||| |||||||||||||||||    
T  33548832 atttgttaaattgaacttgatgactatttccataaccatct 33548792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University