View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_low_71 (Length: 238)
Name: NF16638_low_71
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_low_71 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 44233463 - 44233683
Alignment:
| Q |
1 |
tttgcatttatactataaactataaagtaacgtgtgaatcaaatcaaatatggaatagtcttgcaaagcttcttcttctgaaatgagcaccacagttgag |
100 |
Q |
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| T |
44233463 |
tttgcatttatactataaactataaagtaacgtgtgaatcaaatcaaatatggaagagtcttgcaaagcttcttcttctgaaatgagcaccacagttgag |
44233562 |
T |
|
| Q |
101 |
gaagaagaacaagagggtcctcctcatgaagccatgtttctggtgatagcttaccttcgagtgtacgaggttttaaccatgtctcgtgtttgcacatcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44233563 |
gaagaagaacaagagggtcctcctcatgaagccatgtttctggtgatagcttaccttcgagtgtacgaggttttaaccatgtctcgtgtttgcacatcac |
44233662 |
T |
|
| Q |
201 |
tgagatatgcagtcaacaatg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
44233663 |
tgagatatgcagtcaacaatg |
44233683 |
T |
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