View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16638_low_74 (Length: 223)

Name: NF16638_low_74
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16638_low_74
NF16638_low_74
[»] chr3 (16 HSPs)
chr3 (99-207)||(16676237-16676345)
chr3 (99-190)||(19350448-19350541)
chr3 (107-207)||(17728550-17728650)
chr3 (107-207)||(19029779-19029879)
chr3 (102-198)||(19392187-19392283)
chr3 (111-198)||(16653360-16653447)
chr3 (111-198)||(19012255-19012342)
chr3 (9-46)||(17722185-17722222)
chr3 (9-46)||(19023414-19023451)
chr3 (1-32)||(16676146-16676177)
chr3 (149-204)||(18015141-18015196)
chr3 (16-46)||(18114703-18114733)
chr3 (9-47)||(19386470-19386508)
chr3 (6-47)||(17728768-17728809)
chr3 (6-47)||(19029997-19030038)
chr3 (6-46)||(19438997-19439037)


Alignment Details
Target: chr3 (Bit Score: 109; Significance: 5e-55; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 99 - 207
Target Start/End: Original strand, 16676237 - 16676345
Alignment:
Q  99 ccattaggaaatatcttatataatcacactagattctcctaacaaatgtcattaagctaccaacaattgtttctagcaatcacatacctatttaaattat 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16676237 ccattaggaaatatcttatataatcacactagattctcctaacaaatgtcattaagctaccaacaattgtttctagcaatcacatacctatttaaattat 16676336  T
Q  199 tactatttt 207  Q
    |||||||||    
T  16676337 tactatttt 16676345  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 99 - 190
Target Start/End: Original strand, 19350448 - 19350541
Alignment:
Q  99 ccattaggaaatatcttatataatcacactagat--tctcctaacaaatgtcattaagctaccaacaattgtttctagcaatcacatacctatt 190  Q
    ||||||| ||||||||||||||||||||||||||  |||||||||| ||||||||||||||  ||||| | |||| ||||||||||||||||||    
T  19350448 ccattagcaaatatcttatataatcacactagatcatctcctaacatatgtcattaagctaataacaactctttcaagcaatcacatacctatt 19350541  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 107 - 207
Target Start/End: Complemental strand, 17728650 - 17728550
Alignment:
Q  107 aaatatcttatataatcacactagattctcctaacaaatgtcattaagctaccaacaattgtttctagcaatcacatacctatttaaattattactattt 206  Q
    ||||||| ||||||||||||||||| || |||| || |||||||||| |||||||||| |  |||||||||||||||||||  || |||||| |||||||    
T  17728650 aaatatcatatataatcacactagaatcccctatcatatgtcattaaactaccaacaactacttctagcaatcacatacctgattgaattataactattt 17728551  T
Q  207 t 207  Q
    |    
T  17728550 t 17728550  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 107 - 207
Target Start/End: Complemental strand, 19029879 - 19029779
Alignment:
Q  107 aaatatcttatataatcacactagattctcctaacaaatgtcattaagctaccaacaattgtttctagcaatcacatacctatttaaattattactattt 206  Q
    ||||||| ||||||||||||||||| || |||| || |||||||||| |||||||||| |  |||||||||||||||||||  || |||||| |||||||    
T  19029879 aaatatcatatataatcacactagaatcccctatcatatgtcattaaactaccaacaactacttctagcaatcacatacctgattgaattataactattt 19029780  T
Q  207 t 207  Q
    |    
T  19029779 t 19029779  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 102 - 198
Target Start/End: Original strand, 19392187 - 19392283
Alignment:
Q  102 ttaggaaatatcttatataatcacactagattctcctaacaaatgtcattaagctaccaacaattgtttctagcaatcacatacctatttaaattat 198  Q
    |||| ||| ||| ||||||||||||||| | || ||||||| |||||||||| ||||||| || || ||||||||||||||||||||||| ||||||    
T  19392187 ttagcaaacatcgtatataatcacactaaaatcccctaacatatgtcattaaactaccaaaaactgcttctagcaatcacatacctatttcaattat 19392283  T

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Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 111 - 198
Target Start/End: Complemental strand, 16653447 - 16653360
Alignment:
Q  111 atcttatataatcacactagattctcctaacaaatgtcattaagctaccaacaattgtttctagcaatcacatacctatttaaattat 198  Q
    ||||||||||||||| || || | |||||||  ||||||||||||||||||||| | |||||| ||||||||||||||||| ||||||    
T  16653447 atcttatataatcactctggaatttcctaacgtatgtcattaagctaccaacaactctttctatcaatcacatacctatttgaattat 16653360  T

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Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 111 - 198
Target Start/End: Complemental strand, 19012342 - 19012255
Alignment:
Q  111 atcttatataatcacactagattctcctaacaaatgtcattaagctaccaacaattgtttctagcaatcacatacctatttaaattat 198  Q
    ||||||||||||||| || || | |||||||  ||||||||||||||||||||| | |||||| ||||||||||||||||| ||||||    
T  19012342 atcttatataatcactctggaatttcctaacgtatgtcattaagctaccaacaactctttctatcaatcacatacctatttgaattat 19012255  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 17722222 - 17722185
Alignment:
Q  9 aacattcatatcactgacttcaaaattcaaagtcttcc 46  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  17722222 aacattcatatcactgatttcaaaattcaaagtcttcc 17722185  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 19023451 - 19023414
Alignment:
Q  9 aacattcatatcactgacttcaaaattcaaagtcttcc 46  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  19023451 aacattcatatcactgatttcaaaattcaaagtcttcc 19023414  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 16676146 - 16676177
Alignment:
Q  1 ttctcgacaacattcatatcactgacttcaaa 32  Q
    ||||||||||||||||||||||||||||||||    
T  16676146 ttctcgacaacattcatatcactgacttcaaa 16676177  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 18015141 - 18015196
Alignment:
Q  149 attaagctaccaacaattgtttctagcaatcacatacctatttaaattattactat 204  Q
    |||||||||||||||| | |||| ||||||||||||||||||  |||||| |||||    
T  18015141 attaagctaccaacaactctttcaagcaatcacatacctattcgaattataactat 18015196  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 18114703 - 18114733
Alignment:
Q  16 atatcactgacttcaaaattcaaagtcttcc 46  Q
    |||||||||||||||||||||||||||||||    
T  18114703 atatcactgacttcaaaattcaaagtcttcc 18114733  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 19386470 - 19386508
Alignment:
Q  9 aacattcatatcactgacttcaaaattcaaagtcttccc 47  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  19386470 aacattcatatcactaactccaaaattcaaagtcttccc 19386508  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 17728809 - 17728768
Alignment:
Q  6 gacaacattcatatcactgacttcaaaattcaaagtcttccc 47  Q
    |||||||||||||||| |||||||||||| |||||| |||||    
T  17728809 gacaacattcatatcattgacttcaaaatccaaagtgttccc 17728768  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 19030038 - 19029997
Alignment:
Q  6 gacaacattcatatcactgacttcaaaattcaaagtcttccc 47  Q
    |||||||||||||||| |||||||||||| |||||| |||||    
T  19030038 gacaacattcatatcattgacttcaaaatccaaagtgttccc 19029997  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 19438997 - 19439037
Alignment:
Q  6 gacaacattcatatcactgacttcaaaattcaaagtcttcc 46  Q
    |||||||||||||||| ||||| ||||||| ||||||||||    
T  19438997 gacaacattcatatcattgactccaaaatttaaagtcttcc 19439037  T

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