View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_low_76 (Length: 219)
Name: NF16638_low_76
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_low_76 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 27 - 201
Target Start/End: Original strand, 13634543 - 13634717
Alignment:
| Q |
27 |
ggtttttgcacaacatgatattgattgaatctacgtttgacattgattctcaacaatataaagaattgtgatggcaattgttagagataaaaccctgatt |
126 |
Q |
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| T |
13634543 |
ggtttttgcacaacatgatattgattgaatctacgttcgactttgattctcaacaatataaagaattgtgatggcaattgttagtgataaaaccctgatt |
13634642 |
T |
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| Q |
127 |
ataattaggattttaaatagagttttgtgagtgcgatctagaccacaacacaacagttttttatgttatcgaaac |
201 |
Q |
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| T |
13634643 |
ataattaggattttaaatagagttttgtgagtgcgatctagaccacaacacaacagttttttatgttatcgaaac |
13634717 |
T |
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Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 37 - 201
Target Start/End: Complemental strand, 27532565 - 27532402
Alignment:
| Q |
37 |
caacatgatattgattgaatctacgtttgacattgattctcaacaatataaagaattgtgatggcaattgttagagataaaaccctgattataattagga |
136 |
Q |
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| T |
27532565 |
caacatgacattgattgaatctacatttgattacgattcctaacaatatcaagaattgtgatggcaatcgttagtgataaaactccgattataat-agga |
27532467 |
T |
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| Q |
137 |
ttttaaatagagttttgtgagtgcgatctagaccacaacacaacagttttttatgttatcgaaac |
201 |
Q |
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| T |
27532466 |
ttttaaatagagttttgtgagtgtgatcaaaaccacgacacaacaattttttatgttgtcgaaac |
27532402 |
T |
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