View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16639_high_4 (Length: 344)
Name: NF16639_high_4
Description: NF16639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16639_high_4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 32062277 - 32062620
Alignment:
| Q |
1 |
gtttcaaaagtaaatggctttgtttttccccgacctaaggatgttccttctgagaaatctagggatatggatgcacaaaaatctcataattcaaagttca |
100 |
Q |
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| T |
32062277 |
gtttcaaaagtaaatggctttgtttttccccgacctaaggatgttccttctgagaaatctagggatatggatgcacaaaaatctcataattcaaagttca |
32062376 |
T |
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| Q |
101 |
gagaagatacagttgttcgtagatttgttggttctgccattttggacgaaccaaaggtggaaaatgcttgtcaccacggtttagtagaccccacaatcaa |
200 |
Q |
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| T |
32062377 |
gagaagatacagttgttcgtagatttgttggttctgccattttggatgaaccaaaggtggaaaatgcttgtcaccacggtttagtagaccccacaatcaa |
32062476 |
T |
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| Q |
201 |
catgaaggaagcaatggatgacataaacaacatgtttgggaagccaatagactttgttagaaagaaaaggtcattgaagcaagagaatgcactggagaac |
300 |
Q |
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| T |
32062477 |
catgaaggaagcaatggatgacataaacaacatgtttgggaagccaatagactttgttagaaagaaaaggtcactgaagcaagagaatgcaccggagaac |
32062576 |
T |
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| Q |
301 |
aatagtggaaaggaattcggtgggttttcaatccttgccgatga |
344 |
Q |
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| T |
32062577 |
aatagtggaaaggaattcggtgggttttcaatccttgccgatga |
32062620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 344
Target Start/End: Original strand, 32062652 - 32062755
Alignment:
| Q |
241 |
aagccaatagactttgttagaaagaaaaggtcattgaagcaagagaatgcactggagaacaatagtggaaaggaattcggtgggttttcaatccttgccg |
340 |
Q |
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| T |
32062652 |
aagccaatagattttgttcggaaaaaaagattaatgaagcaggagaaagcaccggggaacaacagtggaaaggaactcagtgggttttcgatacttgcgg |
32062751 |
T |
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| Q |
341 |
atga |
344 |
Q |
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|||| |
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| T |
32062752 |
atga |
32062755 |
T |
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