View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16639_low_1 (Length: 559)
Name: NF16639_low_1
Description: NF16639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16639_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 511; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Original strand, 30098701 - 30099251
Alignment:
| Q |
1 |
tttaaagatgatggcatgacaaagaaaattccaaacaaatggaaaggaacatgtgaaactggccaagaattcaatacctcaatgtgtaacttcaaattga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30098701 |
tttaaagatgatggcatgacaaagaaaattccaaacaaatggaaaggaacatgtgaaactggccaagaattcaatacctcaatgtgtaacttcaaattga |
30098800 |
T |
|
| Q |
101 |
ttggagctagttatttcaacaaaggtgtgattgcttcaaatccaaatgttacaatcagcatgaactcagctagagacactataggacatggaactcacac |
200 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30098801 |
ttggagctagatatttcaacaaaggtgtgattgcttcaaatccaaatgttacaatcagcatgaactcagctagagacactatagggcatggaactcacac |
30098900 |
T |
|
| Q |
201 |
atcatcaactgttgcaggtaactannnnnnnngtggttggagacaaatgttagtaaattatgttagtttccggtgtttgaactctcgacttcctagctag |
300 |
Q |
| |
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|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30098901 |
atcatcaactgttgcaggtaactattttttttgttgttggagacaaatgttagtaaattatgttagtttccggtgtttgaactctcgacttcctagctag |
30099000 |
T |
|
| Q |
301 |
tactcattcggtgtctctgagcttaccaatcgaactgtctgctttgaacttgtaggtaactatgttaatggagcttcttattttggttatgctaaaggaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30099001 |
tactcattcggtgtctctgagcttaccaatcgaactgtctgctttgaacttgtaggtaactatgttaatggagcttcttattttggttatgccaaaggaa |
30099100 |
T |
|
| Q |
401 |
tagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgggaagagggtcgtttcgcctctgatgttttagctggcatggaccaagc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30099101 |
tagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgggaagagggtcgtttcgcctctgatgttttagctggcatggaccaagc |
30099200 |
T |
|
| Q |
501 |
tattaacgacggtgttgatgtgatttcaatttcaatgggatttgatgatgt |
551 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30099201 |
tattaacgacggtgttgatgtgatttcaatttcaatgggatttgatgatgt |
30099251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 30092165 - 30091942
Alignment:
| Q |
1 |
tttaaagatgatggcatgacaaagaaaattccaaacaaatggaaaggaacatgtgaaactggccaagaattcaatacctcaatgtgtaacttcaaattga |
100 |
Q |
| |
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||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| ||||| ||||||||| ||| |
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| T |
30092165 |
tttaaagatgacggcatgacaaagaaaattccgaacaaatggaaaggaacatgtgaaactggccataaattcaatgcctccatgtgcaacttcaaactga |
30092066 |
T |
|
| Q |
101 |
ttggagctagttatttcaacaaaggtgtgattgcttcaaatccaaatgttacaatcagcatgaactcagctagagacactataggacatggaactcacac |
200 |
Q |
| |
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|||||||||| | |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||| |||||||||||||| || |
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|
| T |
30092065 |
ttggagctagatctttcaacaaaggtgtgattgcttcaaatccaaatgttagaatcaggatgaactcagctagagacagtatcggacatggaactcatac |
30091966 |
T |
|
| Q |
201 |
atcatcaactgttgcaggtaacta |
224 |
Q |
| |
|
||||||||| |||||||||||||| |
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|
| T |
30091965 |
atcatcaacagttgcaggtaacta |
30091942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 298 - 547
Target Start/End: Complemental strand, 30091914 - 30091666
Alignment:
| Q |
298 |
tagtactcattcggtgtctctgagcttaccaatcgaactgtctgctttgaacttgtaggtaactatgttaatggagcttcttattttggttatgctaaag |
397 |
Q |
| |
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|||||||| ||| || |||| ||||||| |||||| |||||||||| | |||| |||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
30091914 |
tagtactccttctgtaactctcagcttactaatcgagctgtctgcttcggacttc-aggtaactatgtcaatggaacttcttattttggttatgctaaag |
30091816 |
T |
|
| Q |
398 |
gaatagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgggaagagggtcgtttcgcctctgatgttttagctggcatggacca |
497 |
Q |
| |
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|| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||| |||||||| |
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| T |
30091815 |
gagtagcaagaggcattgcaccaagagctaggcttgctatgtacaaagtcatttgggaagagggtcttttggcttctgatgttttagctggaatggacca |
30091716 |
T |
|
| Q |
498 |
agctattaacgacggtgttgatgtgatttcaatttcaatgggatttgatg |
547 |
Q |
| |
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||||||| || ||||||||||||||||||||||| ||||||||||||| |
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|
| T |
30091715 |
agctattgctgatggtgttgatgtgatttcaatttctatgggatttgatg |
30091666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 30088207 - 30087982
Alignment:
| Q |
1 |
tttaaagatgatggcatgacaaagaaaattccaaacaaatggaaaggaacatgtgaaactggccaagaattcaatacctcaatgtgtaacttcaaattga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||| ||||||||| ||| |
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|
| T |
30088207 |
tttaaagatgatggcatgacaaagaaaattccaaacaaatggaaaggaacatgtgaaactggccataaattcaatgcctccgtgtgcaacttcaaactga |
30088108 |
T |
|
| Q |
101 |
ttggagctagttatttcaacaaaggtgtgattgc---ttcaaatccaaatgttacaatcagcatgaactcagctagagacactataggacatggaactca |
197 |
Q |
| |
|
||||||| || | |||||| |||||||||||||| | ||| ||||||| |||||||| ||||||||||||||||| ||| |||||||||||||| |
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| T |
30088107 |
ttggagcaagatctttcaataaaggtgtgattgcaggtaactatcgaaatgttggaatcagcaagaactcagctagagacagtatcggacatggaactca |
30088008 |
T |
|
| Q |
198 |
cacatcatcaactgttgcaggtaact |
223 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
30088007 |
tacatcatcaactgttgcaggtaact |
30087982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 354 - 547
Target Start/End: Complemental strand, 30087879 - 30087686
Alignment:
| Q |
354 |
aggtaactatgttaatggagcttcttattttggttatgctaaaggaatagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgg |
453 |
Q |
| |
|
|||||||||||| || ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30087879 |
aggtaactatgtcaacggagcttcttattttggctatgctaaaggagtagcaagaggcattgcaccaaaagctaagattgctatgtacaaagtcatttgg |
30087780 |
T |
|
| Q |
454 |
gaagagggtcgtttcgcctctgatgttttagctggcatggaccaagctattaacgacggtgttgatgtgatttcaatttcaatgggatttgatg |
547 |
Q |
| |
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||||||| | | | || ||||||||||||||||| ||||||||||| |||| || |||||||| |||||||||||||| || ||| |||||| |
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|
| T |
30087779 |
gaagaggatgttatggcttctgatgttttagctggaatggaccaagcaattattgatggtgttgacgtgatttcaatttctattggaattgatg |
30087686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 35171794 - 35171586
Alignment:
| Q |
1 |
tttaaagatgatggcatgacaaagaaaattccaaacaaatggaaaggaacatgtgaaactggccaagaattcaatacctcaatgtgtaacttcaaattga |
100 |
Q |
| |
|
|||||||| ||||||||| | || || || |||| ||||||||||||| |||| || | || ||||| ||||| || || ||||||||||| ||||| | |
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|
| T |
35171794 |
tttaaagacgatggcatgtcgaaaaacatcccaacaaaatggaaaggaaaatgtcaagcaggacaagatttcaacacttctatgtgtaacttgaaattaa |
35171695 |
T |
|
| Q |
101 |
ttggagctagttatttcaacaaaggtgtgattgcttcaaatccaaatgttacaatcagcatgaactcagctagagacactataggacatggaactcacac |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||| |||||||| | |||||| |||||||||||||||||||| ||||||||| | |||||| |
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|
| T |
35171694 |
ttggagctagatatttcaacaaaggtgtgattgcatcaaaaccaaatgtcaaaatcagtatgaactcagctagagacacacaaggacatggtagtcacac |
35171595 |
T |
|
| Q |
201 |
atcatcaac |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
35171594 |
atcatcaac |
35171586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 382 - 504
Target Start/End: Complemental strand, 35171551 - 35171429
Alignment:
| Q |
382 |
tttggttatgctaaaggaatagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgggaagagggtcgtttcgcctctgatgttt |
481 |
Q |
| |
|
||||||||||| ||||| |||| ||||| ||||||||||||||||| ||||| ||||| ||||| ||||||| || |||||| | || ||||||||| |
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|
| T |
35171551 |
tttggttatgcaaaaggtgtagctagaggtattgcaccaaaagctagaattgcaatgtataaagtactttgggacgaaggtcgtctagcttctgatgttc |
35171452 |
T |
|
| Q |
482 |
tagctggcatggaccaagctatt |
504 |
Q |
| |
|
| || || ||||| ||||||||| |
|
|
| T |
35171451 |
ttgcaggaatggatcaagctatt |
35171429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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