View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16639_low_2 (Length: 385)
Name: NF16639_low_2
Description: NF16639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16639_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 113 - 374
Target Start/End: Complemental strand, 18220654 - 18220393
Alignment:
| Q |
113 |
cttgtacatttgaaggtataagttagcggaggagaacatgttgaaggttatgaaggaaaaaggagctgtgtatggaaactcaataatgaggcaagagctg |
212 |
Q |
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| T |
18220654 |
cttgtacatttgaaggtataagttagcagaggagaacatgttgaaggttatgaaggaaaaaggagctgtgtatggaaactcaataatgaggcaagagctg |
18220555 |
T |
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| Q |
213 |
agatcagaagcacgaaagtatattggtgacacaggtttacttgatcatttgctgaaacacatggctggaaaagtggcaccaggaggagttgaaagattca |
312 |
Q |
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| T |
18220554 |
agatcagaagcacgaaagtatattggtgacacaggtttacttgatcatttgctgaaacacatggctggaaaagtggcaccaggaggagttgaaagattca |
18220455 |
T |
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| Q |
313 |
gacggaaacacaatgccgaaggttcaatggaatactggttagagagtgctgatcttgatgat |
374 |
Q |
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| T |
18220454 |
gacggaaacacaatgccgaaggttcaatggaatactggttagagagtgctgatcttgctgat |
18220393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 18220749 - 18220719
Alignment:
| Q |
18 |
tttttcagtacacagttcagttttccacttg |
48 |
Q |
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| T |
18220749 |
tttttcagtacacagttcagttttccacttg |
18220719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 112 - 374
Target Start/End: Complemental strand, 43012431 - 43012169
Alignment:
| Q |
112 |
ccttgtacatttgaaggtataagttagcggaggagaacatgttgaaggttatgaaggaaaaaggagctgtgtatggaaactcaataatgaggcaagagct |
211 |
Q |
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| T |
43012431 |
ccttgtacatttgaaggtataagttagcagaggagaacatgttgaaggttatgaaggaaaaaggagctgtgtatggaaactcaataatgaggcaagagct |
43012332 |
T |
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| Q |
212 |
gagatcagaagcacgaaagtatattggtgacacaggtttacttgatcatttgctgaaacacatggctggaaaagtggcaccaggaggagttgaaagattc |
311 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43012331 |
tagatcagaagcaagaaagtatattggtgacacaggtttacttgatcatttgttgaaacacatggctggaaaagtggcaccaggaggagttgatagattc |
43012232 |
T |
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| Q |
312 |
agacggaaacacaatgccgaaggttcaatggaatactggttagagagtgctgatcttgatgat |
374 |
Q |
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| T |
43012231 |
agacggaaacacaatgccgaaggttcaatggaatactggttagagagtgctgatcttgctgat |
43012169 |
T |
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