View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16640_high_10 (Length: 337)
Name: NF16640_high_10
Description: NF16640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16640_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 47949754 - 47949435
Alignment:
| Q |
1 |
ccctaggatgtaacatacaaaacataatatcaaaccagtaaagatatgcatgaccaaccatcttcacacattgtcatttataaacaaacttcatagtttt |
100 |
Q |
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| T |
47949754 |
ccctaggatgtaacatacaaaacataatatcaaaccagtaaagatatacatgaccaaccatcttcacacattgtcatttataatcaaatttcatagtttt |
47949655 |
T |
|
| Q |
101 |
agcataggtccaccatgaatttatattttatagttttagtgtgataaacaaaagttttttaattgcaatttggtgcaagatcaatttagcacaggaccaa |
200 |
Q |
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| T |
47949654 |
agcataggtccaccatgaatttatattttatagttttagtgtgataaacaaaagttttttaattgcaatttggtgcaagatcaatttagcacaggaccaa |
47949555 |
T |
|
| Q |
201 |
ttcaatgcga-nnnnnnnnatcaaacattagtagtttttccattttatattatcaaatcaaataggtgtaattttcaaataatttaccaaacaaaggtaa |
299 |
Q |
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|||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47949554 |
ttcaatgcgatttttttttatcaaacattggtagtttttccattt--tattatcaaatcaaataggtgtaattttcaaataatttaccaaacaaaggtaa |
47949457 |
T |
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| Q |
300 |
gtggtcgctgccaccaaccaac |
321 |
Q |
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|||||||||||||||||||||| |
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| T |
47949456 |
gtggtcgctgccaccaaccaac |
47949435 |
T |
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