View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16640_high_11 (Length: 317)
Name: NF16640_high_11
Description: NF16640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16640_high_11 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 8 - 317
Target Start/End: Original strand, 7081553 - 7081862
Alignment:
| Q |
8 |
tgagatgaagattttgaaggcatgatggaagcttttctgaagcaaagatttgaagggatagtgttttctaagtaagaaacttcttcattgaaggaagtgt |
107 |
Q |
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| T |
7081553 |
tgagatgaagattttgaaggcatgatggaagcttttctgaagcaaagatttgaagggatagtgttttctaagtaagaaacttcttcattgaaggaagtgt |
7081652 |
T |
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| Q |
108 |
gagggaaaggttgtgaatttgggaagatgaagctacctcttgtgtaagaaactgaggagagtgtaaagttaaggtgagtgtttgcaaagtagattaaggg |
207 |
Q |
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| T |
7081653 |
gagggaaaggttgtgaatttgggaagatgaagctacctcttgtgtaagaaactgaggagagtgtaaagttaaggtgagtgtttgcaaagtagattaaggg |
7081752 |
T |
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| Q |
208 |
aatgatggatttgagaagttgtgtagttccacaagttttgattatgatctttgttggatatacaaagagacttgattctgataaaacataggcatcaaag |
307 |
Q |
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| T |
7081753 |
aatgatggatttgagaagttgtgtagttccacaagttttgattatgatctttgttggatatacaaagagacttgattctgataaaacataggcatcaaag |
7081852 |
T |
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| Q |
308 |
taagagtttc |
317 |
Q |
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| T |
7081853 |
taagagtttc |
7081862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 315
Target Start/End: Complemental strand, 49020237 - 49019942
Alignment:
| Q |
17 |
gattttgaaggcatgatggaagcttttctgaagcaaagatttgaagggatagtgttttctaagtaagaaacttcttcattgaaggaagtgtgagggaaag |
116 |
Q |
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| T |
49020237 |
gatttagagggcatgatggaagcttttctatggcaaagatttgaagggatagtgtcttctaaataggttacttcgtcattgaagcttgtgtaagggaaag |
49020138 |
T |
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| Q |
117 |
gttgtgaatttgggaagatgaagctacctcttgtgtaagaaactgaggagagtgtaaagttaagg-tgagtg-tttgcaaagtagattaagggaatgatg |
214 |
Q |
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| T |
49020137 |
gttgtgcatttgggaagatgaagcttcctcttgtgtagc-----gacaagagcataaagtgaggcctgtttggtttgcatagtgaattaatggaagaatg |
49020043 |
T |
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| Q |
215 |
gatttgagaagttgtgtagttccacaagttttgattatgatctttgttggatatacaaagagacttgattctgataaaacataggcatcaaagtaagagt |
314 |
Q |
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| T |
49020042 |
gatttgagaagttgggttgttccacatgttttgattatgatcttagttggataaacaaagaggcttgattctgataaaacgtatgcatcaaagtaagagt |
49019943 |
T |
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