View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16640_high_12 (Length: 317)
Name: NF16640_high_12
Description: NF16640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16640_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 34174557 - 34174860
Alignment:
| Q |
1 |
taatttctgcattagcttttgatttgagttgcagaatttgttcctttgtgaagtggaagattcgatgaggatgtgatacttcaaattgttgactttgtgt |
100 |
Q |
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| T |
34174557 |
taatttctgcattagcttttgatttgagttgcagaatttgttcctttgtgaagtggaagattcgatgaggatgtgatacttcaaattgttgactttgtgt |
34174656 |
T |
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| Q |
101 |
ttcctttgtgaaaggaaaccgtatgggatg---gttaatgttgtttggaaagaagcgttcgaaagaagggatttttgttggtttattgaaaccatgtgag |
197 |
Q |
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| T |
34174657 |
ttcctttgtgaaaggaaaccgtatgggatgatggttaatgttgtttggaaagaaacgttcgaaagaagggatttttgttggtttattgaaaccatgtgag |
34174756 |
T |
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| Q |
198 |
atttcaacccaagaattgacgaaatgccaaaacgacttggcatctacaaccacatggttcatttcaataccaatgaagataccatcaattaactctgtta |
297 |
Q |
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| T |
34174757 |
atttccaccccagaattgacgaaatgccaaaacgacttggcatctacaaccacatggttcatttcaataccaatgaagataccatcaattaactctgtta |
34174856 |
T |
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| Q |
298 |
cttg |
301 |
Q |
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|||| |
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| T |
34174857 |
cttg |
34174860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 6e-71; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 7398915 - 7399213
Alignment:
| Q |
1 |
taatttctgcattagcttttgatttgagttgcagaatttgttcctttgtgaagtggaagattcgatgaggatgtgatacttcaaattgttgactttgtgt |
100 |
Q |
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| T |
7398915 |
taatttctgcattagcttttgatttgagttgcagaatttgttctttagtaaagtggaagattcgattagac---gaaacatcacattgttgattttgtgc |
7399011 |
T |
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| Q |
101 |
ttcctttgtgaaaggaaaccgtatgggatggttaatgttgtttggaaagaagcgttcgaaagaagggatttttgttggtttattgaaaccatgtgagatt |
200 |
Q |
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| T |
7399012 |
atcttttgtgaaaggaaaccgtatgggacggttaacattatttggaaaccaacgttcgaaagaaggaacttttgttggcttattgaaaccttgtgcgatt |
7399111 |
T |
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| Q |
201 |
tcaacccaagaattgacgaaatgccaaaacgacttggcatctacaaccacatggttcatttcaataccaatgaagataccatcaattaactctgttactt |
300 |
Q |
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| T |
7399112 |
tcagcccaagagttgatgaaatgccaaaatgacttcgcgtctacacacacatggttaattgtaaaaccaatgaagataccatcgattaactctgttactt |
7399211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 94 - 302
Target Start/End: Original strand, 39075774 - 39075982
Alignment:
| Q |
94 |
tttgtgtttcctttgtgaaaggaaaccgtatgggatggttaatgttgtttggaaagaagcgttcgaaagaagggatttttgttggtttattgaaaccatg |
193 |
Q |
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|||||| |||||||||||||||||||| |||||| ||||||||||||||| ||| | |||| |||||||||||| |||||||| ||||| ||||| || |
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| T |
39075774 |
tttgtgcttcctttgtgaaaggaaacctaatgggacggttaatgttgtttgtaaaccaacgtttgaaagaagggatatttgttggcttattaaaaccttg |
39075873 |
T |
|
| Q |
194 |
tgagatttcaacccaagaattgacgaaatgccaaaacgacttggcatctacaaccacatggttcatttcaataccaatgaagataccatcaattaactct |
293 |
Q |
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| T |
39075874 |
tgagatttcagcccaagagttgatgaaatgccaaaatgacttggcgtctacacccacatggttaattgcaaaaccaatgaagataccatcgattaactct |
39075973 |
T |
|
| Q |
294 |
gttacttgt |
302 |
Q |
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| T |
39075974 |
gttacttgt |
39075982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 39075659 - 39075725
Alignment:
| Q |
3 |
atttctgcattagcttttgatttgagttgcagaatttgttcctttgtgaagtggaagattcgatgag |
69 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
39075659 |
atttctgcattagcttttgatttgagttgcagaatttgttccttactaaagtggaagattcgatgag |
39075725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 256
Target Start/End: Original strand, 39082971 - 39083033
Alignment:
| Q |
194 |
tgagatttcaacccaagaattgacgaaatgccaaaacgacttggcatctacaaccacatggtt |
256 |
Q |
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| T |
39082971 |
tgagatttcagaccaagaattgacgaaatgccaaaatgacttgccgtctaaaacaacatggtt |
39083033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 247
Target Start/End: Original strand, 39071527 - 39071568
Alignment:
| Q |
206 |
ccaagaattgacgaaatgccaaaacgacttggcatctacaac |
247 |
Q |
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| T |
39071527 |
ccaagaattgacgaaatgccaaaatgacttggcgtctgcaac |
39071568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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