View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16640_high_20 (Length: 215)
Name: NF16640_high_20
Description: NF16640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16640_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 3254643 - 3254805
Alignment:
| Q |
19 |
ttgcctacacagaatcaaaacaaaggaagagggaggagagtttgaatatgttgtccaaactatcaaactaaaagtttgcatattagactagaaagtaaat |
118 |
Q |
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| T |
3254643 |
ttgcctacacagaatcaaaacaaaggaagagggag-agagtttgaatatgttgtccaaactatcaaactaaaagtttgcatattagactagaaagtaaat |
3254741 |
T |
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| Q |
119 |
aaaaacactgataattctagttaacatacttaaattcaaatgaaattttacattttggagatat |
182 |
Q |
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| T |
3254742 |
aaaaacactgataattctagttaacatacttaaattcaaatgaaattttacattttggagatat |
3254805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 182
Target Start/End: Complemental strand, 7872545 - 7872427
Alignment:
| Q |
64 |
atatgttgtccaaactatcaaactaaaagtttgcatattagactagaaagtaaataaaaacactgataattctagttaacatacttaaattcaaatgaaa |
163 |
Q |
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| T |
7872545 |
atatgttgtccaaagtatgaaactaaacggttgcatattggaatagaaactaatacataacactgataaatctagtaacaatacttaaatttaaatgaaa |
7872446 |
T |
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| Q |
164 |
ttttacattttggagatat |
182 |
Q |
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| T |
7872445 |
gtttacatcttgaagatat |
7872427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 171
Target Start/End: Complemental strand, 14018948 - 14018865
Alignment:
| Q |
88 |
aaaagtttgcatattagactagaaagtaaataaaaacactgataattctagttaacatacttaaattcaaatgaaattttacat |
171 |
Q |
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| T |
14018948 |
aaaaggtttcatattagaataaagagtaacgaaaaacactaataattctagtaaataaacttaaattcaaatgaaagtttacat |
14018865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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