View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16640_high_3 (Length: 500)

Name: NF16640_high_3
Description: NF16640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16640_high_3
NF16640_high_3
[»] chr6 (4 HSPs)
chr6 (1-404)||(992693-993094)
chr6 (299-341)||(4139687-4139729)
chr6 (305-350)||(18612649-18612694)
chr6 (453-485)||(993776-993808)
[»] chr5 (1 HSPs)
chr5 (304-350)||(18145288-18145334)
[»] chr1 (2 HSPs)
chr1 (298-343)||(33202938-33202983)
chr1 (298-343)||(19637803-19637848)
[»] chr2 (1 HSPs)
chr2 (298-350)||(18571000-18571052)
[»] chr4 (2 HSPs)
chr4 (320-370)||(5555133-5555183)
chr4 (307-359)||(35062463-35062515)


Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 992693 - 993094
Alignment:
Q  1 ttttttacatggggttatttactctatgagctttaagataggtggaaaattggaaattcatttgcagtgagatgatcaagcaagtttatttattggatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| | |||||||| |||||||||||||||||    
T  992693 ttttttacatggggttatttactctatgagctttaagataggtggataattggaaattgatttgcagtgaggttatcaagcatgtttatttattggatta 992792  T
Q  101 agcatgttgcaatgtcggatatgtatcatgtctaatat-caatacatatgtttacattaaattatgttactttttaaattattattattaaagttgatgt 199  Q
    ||| ||||||||||||| ||||||||||||||||| ||  || | | |||||||||||||||||||||||||||| |   ||||||||||||||||||||    
T  992793 agcgtgttgcaatgtcgtatatgtatcatgtctaacataaaaaaaaaatgtttacattaaattatgttactttttga---attattattaaagttgatgt 992889  T
Q  200 atatgtgtcgtattcggtgttcgtgtatgggaaaattggaaatgatttgcacttaggtgatgaagcatataggtatgcatcaaattaagtatgttcttgt 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  992890 atatgtgtcgtattcggtgttcgtgtatgggaaaattggaaatgatttgcacttaggtgatgaagcatataggtgcgcatcaaattaagtatgttcttgt 992989  T
Q  300 gtcggatatgtatcgtgtttgacaccaacacatatgtttacattaaattatattactttttaaattattattgatggcaatgtgtcggtttcgtgttcag 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  992990 gtcggatatgtatcgtgtttgacaccaacacatatgtttacattaaattatattattttttaaattattattgatggcaatgtgtcagtttcgtgttcag 993089  T
Q  400 tgttt 404  Q
    |||||    
T  993090 tgttt 993094  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 341
Target Start/End: Complemental strand, 4139729 - 4139687
Alignment:
Q  299 tgtcggatatgtatcgtgtttgacaccaacacatatgtttaca 341  Q
    ||||| |||| |||||||||||||||||||||||||| |||||    
T  4139729 tgtcgtatatatatcgtgtttgacaccaacacatatgattaca 4139687  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 18612694 - 18612649
Alignment:
Q  305 atatgtatcgtgtttgacaccaacacatatgtttacattaaattat 350  Q
    ||||||||||| | ||||||||||||||||| ||||||| ||||||    
T  18612694 atatgtatcgtatctgacaccaacacatatgattacattgaattat 18612649  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 485
Target Start/End: Original strand, 993776 - 993808
Alignment:
Q  453 atatttcaaagaaatggagtaagaggatcatct 485  Q
    |||||| ||||||||||||||||||||||||||    
T  993776 atattttaaagaaatggagtaagaggatcatct 993808  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 350
Target Start/End: Original strand, 18145288 - 18145334
Alignment:
Q  304 gatatgtatcgtgtttgacaccaacacatatgtttacattaaattat 350  Q
    |||| ||||||||||||||||||||||||||| ||||||| ||||||    
T  18145288 gataagtatcgtgtttgacaccaacacatatgattacattgaattat 18145334  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 298 - 343
Target Start/End: Complemental strand, 33202983 - 33202938
Alignment:
Q  298 gtgtcggatatgtatcgtgtttgacaccaacacatatgtttacatt 343  Q
    |||||||||||||||||||| ||||||||| ||||||| |||||||    
T  33202983 gtgtcggatatgtatcgtgtctgacaccaaaacatatgattacatt 33202938  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 343
Target Start/End: Complemental strand, 19637848 - 19637803
Alignment:
Q  298 gtgtcggatatgtatcgtgtttgacaccaacacatatgtttacatt 343  Q
    ||||||||||||||||||||  |||||| ||||||||| |||||||    
T  19637848 gtgtcggatatgtatcgtgtccgacaccgacacatatgattacatt 19637803  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 350
Target Start/End: Complemental strand, 18571052 - 18571000
Alignment:
Q  298 gtgtcggatatgtatcgtgtttgacaccaacacatatgtttacattaaattat 350  Q
    ||||||||||||||||||||| |||||  ||||||||| ||||||| ||||||    
T  18571052 gtgtcggatatgtatcgtgttcgacactgacacatatgattacattgaattat 18571000  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 370
Target Start/End: Original strand, 5555133 - 5555183
Alignment:
Q  320 gacaccaacacatatgtttacattaaattatattactttttaaattattat 370  Q
    |||||| ||||||||  |||||||||||||| ||| |||||||||||||||    
T  5555133 gacaccgacacatataattacattaaattatcttattttttaaattattat 5555183  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 359
Target Start/End: Complemental strand, 35062515 - 35062463
Alignment:
Q  307 atgtatcgtgtttgacaccaacacatatgtttacattaaattatattactttt 359  Q
    |||| ||||||| ||||||||||| |||| ||||||| |||||||||| ||||    
T  35062515 atgtgtcgtgttagacaccaacacttatgattacattgaattatattattttt 35062463  T

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