View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16640_high_5 (Length: 421)
Name: NF16640_high_5
Description: NF16640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16640_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 14 - 173
Target Start/End: Original strand, 23034367 - 23034525
Alignment:
| Q |
14 |
aaatgaaggaacatgaaagtgagagtgcagccgaaggttcagaatctagtttggagagactgttgtggtggttgttggttatgtgcaaacggttgtatgg |
113 |
Q |
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| T |
23034367 |
aaatgaagcaacatgaaagtgagagtgcaaccgaaggttcagaatctagtttggagagactgttgtggtggttgttggttatgtgccaacggttgt-tgg |
23034465 |
T |
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| Q |
114 |
aaaacatgtggctttatccagatcccgaaagattgaaatgtcacgtggatgctagatttc |
173 |
Q |
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| T |
23034466 |
aaaacatgtggctttatccagatcccgaaagattgaaatgtaacatggatgctagatttc |
23034525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 201 - 308
Target Start/End: Original strand, 23034613 - 23034720
Alignment:
| Q |
201 |
caaaattgactcgaagatactggcagatgctattgttctagagcagattgtatttctgagttacatgttatcatacctgagattataagtaatttaaatt |
300 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||| | ||||||||||||||| |||||||| |
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| T |
23034613 |
caaaattgactcgaagatactggcggatgctattgttctagagcagattgtatttctgaattacacgttatcacagctgagattataagtattttaaatt |
23034712 |
T |
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| Q |
301 |
caaattac |
308 |
Q |
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|||||||| |
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| T |
23034713 |
caaattac |
23034720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 310 - 418
Target Start/End: Original strand, 23035051 - 23035161
Alignment:
| Q |
310 |
gatttcgcatttgagacgatgatcctatttt--ttatcaagggactacactaagaaatggactatatttctctgctacaagttcctagatcattctaaag |
407 |
Q |
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| T |
23035051 |
gatttcggatatgagacgatggtcctattttttttatcaatgaattacgctaagaaatggactatgtttctctgctacaagttccttgatcattccaaag |
23035150 |
T |
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| Q |
408 |
agcgtatagtg |
418 |
Q |
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||||||||||| |
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| T |
23035151 |
agcgtatagtg |
23035161 |
T |
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