View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16640_high_6 (Length: 399)
Name: NF16640_high_6
Description: NF16640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16640_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 5 - 382
Target Start/End: Original strand, 43399112 - 43399489
Alignment:
| Q |
5 |
ggtagattattctattagatgggaaactcattttctaataagcctcactttttaggagtctccccaatgttgaactcctaacaatgnnnnnnncttcccg |
104 |
Q |
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| T |
43399112 |
ggtagattagtctattagatgggaaactcattttctaataagcctcactttttaggagtctccccaatgttgaactcctaacaatgtttttttcttcctg |
43399211 |
T |
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| Q |
105 |
attagcgaactcctaacaatgtactactgtacgagagctgatttcctcaggggctttcattccgcgacacttcactcaacattatccgctcaaaatcctt |
204 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43399212 |
attagcgaactcctaacaatgtactactctacgagagctgatttccttaggggctttcattccgcgacacttcactcaacattatccgctcaaaatcctt |
43399311 |
T |
|
| Q |
205 |
catgagtagccatttttgagaagtcaatcttcttaacgaaaacatcaaatgttacaagcataagcttaaacaaagaatcaaatccaaaaaactagtctat |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
43399312 |
catgagtagccatttttgagaagtcaatcttcttaacgaaaacatcaaatgttacaagcataagcttaaacaaagaatcaaatccaaaagactaatctat |
43399411 |
T |
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| Q |
305 |
tagatagaatgactcaatactcattgcacattggcttgtaagcctccttttttatgtgagactgtccaacgttgaact |
382 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43399412 |
tagatagaatgactcaatactcattgcacattggcttataagcctccttttttatgtgagactgtccaacgttgaact |
43399489 |
T |
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