View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16640_high_7 (Length: 379)
Name: NF16640_high_7
Description: NF16640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16640_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 39 - 364
Target Start/End: Complemental strand, 18513063 - 18512738
Alignment:
| Q |
39 |
caaatgttgataaaattttcacctgtaattggttgtttttggttgaagaagttgaagatgcagcagaaggaatttctagtataactggatctatgggtga |
138 |
Q |
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| T |
18513063 |
caaatattgataaaatattcacctgtaattggttgtttttggttgaagaaggtgaagatgcagaagaaggaatttctagtataactggatctatcggtga |
18512964 |
T |
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| Q |
139 |
gaagtagaagacttgaactgtgagagcaactaaagctgctagcaccaagcttgaggtcagtgtgacacaatatttaccaagggtggaaggagtattggtt |
238 |
Q |
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| T |
18512963 |
gaagtagaagacttgaactgtgagagcaactaaagatgctagcaccaagcttgaggtcagtgtgacacaatatttaccaagggtggaaggaggattggtt |
18512864 |
T |
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| Q |
239 |
atattggaagccatgctttacaagctgtgtgctttgcatatagtagaattttattatcacatttttatggaattgttttgatttaggtatgtgttgacat |
338 |
Q |
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| T |
18512863 |
atattggaagccatgctttacaagctgtgtgctttgcatatagtggaattttattatcacatttttatggaactgttttgatttaggtatgtgttgacat |
18512764 |
T |
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| Q |
339 |
ctgtttccttttctggactgaaaagt |
364 |
Q |
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| T |
18512763 |
ctgtttccttttctggactgaaaagt |
18512738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 33 - 195
Target Start/End: Complemental strand, 18486720 - 18486558
Alignment:
| Q |
33 |
atgtaacaaatgttgataaaattttcacctgtaattggttgtttttggttgaagaagttgaagatgcagcagaaggaatttctagtataactggatctat |
132 |
Q |
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| T |
18486720 |
atgtgacaaatattgataaaatattcacctgtaattggttgtttttggttgaagaagttgaagatgcagcagaaggaatttctagtataactggatctat |
18486621 |
T |
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| Q |
133 |
gggtgagaagtagaagacttgaactgtgagagcaactaaagctgctagcaccaagcttgaggt |
195 |
Q |
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| T |
18486620 |
gggtgagaagtagaagacttgaactgtgagagcaactaaagctgctagcaccaagcttgaggt |
18486558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 121 - 200
Target Start/End: Complemental strand, 18506457 - 18506378
Alignment:
| Q |
121 |
aactggatctatgggtgagaagtagaagacttgaactgtgagagcaactaaagctgctagcaccaagcttgaggtcagtg |
200 |
Q |
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| T |
18506457 |
aactggatctatgggtgaaaagtagaagacttgaactgtgagagcaactaaagctgctagtaccaagcttgaggttagtg |
18506378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 18506515 - 18506482
Alignment:
| Q |
54 |
ttttcacctgtaattggttgtttttggttgaaga |
87 |
Q |
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| T |
18506515 |
ttttcacctgtaattggttgtttttggttgaaga |
18506482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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