View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16640_low_1 (Length: 553)
Name: NF16640_low_1
Description: NF16640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16640_low_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 522; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Original strand, 1790645 - 1791178
Alignment:
| Q |
1 |
agatagatttctgatgattttcttcattttgcatatttgcagggaaattgacttgtaagcttaaagatggcactgtgttttttcgcaagggccatggcgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1790645 |
agatagatttctgatgattttcttcattttgcatatttgcagggaaattgacttgtaagcttaaagatggcactgtgttttttcgcaagggccatggcgg |
1790744 |
T |
|
| Q |
101 |
agatgaagcagagctgtttgaattcacaacagacgaaggtgagggtgattatcttaaattgttgcattggttcactctctcctattaatttgtttttata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1790745 |
agatgaagcagagctgtttgaattcacaacagacgaaggtgagggtgattatcttaaattgttgcattggttcactctctcctattaatttgtttttata |
1790844 |
T |
|
| Q |
201 |
ctaaccaacgaaagtgaatgtctgttgtgttgagcagcgcaagtgactagagggcttgatagagctgtaatgagtatgaagaagggtgaggtagcatcgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1790845 |
ctaaccaacgaaagtgaatgtctgttgtgttgagcagcgcaagtgactagagggcttgatagagctgtaatgagtatgaagaagggtgaggtagcatcgt |
1790944 |
T |
|
| Q |
301 |
tgactattgcacctaagtatggttttggttcatccgagtctcgacaggaattggcagtggttcctgcaaattcaaccttacattatgaggttgagttagt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1790945 |
tgactattgcacctaagtatggttttggttcatccgagtctcgacaggaattggcagtggttcctgcaaattcaaccttacattatgaggttgagttagt |
1791044 |
T |
|
| Q |
401 |
attattcgtaaagaggacggaggacgaaaaaagatccaagtttcgtaagactcttcgtgatgcagtgagagagtggtctcagaccaaacctaagagtgaa |
500 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1791045 |
atcattcgtaaagaggatggaggacgaaaaaagatccaagtttcgtaagactcttcgtgatgcagtgagagagtggtctcagaccaaacctaagagtgaa |
1791144 |
T |
|
| Q |
501 |
aagaacaaagatttctaccacatcaatacccaca |
534 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
1791145 |
aagaacaaagatttctaccacatcaatacacaca |
1791178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 24 - 413
Target Start/End: Complemental strand, 3495501 - 3495118
Alignment:
| Q |
24 |
tcattttgcatatttgcagggaaattgacttgtaagcttaaagatggcactgtgttttttcgcaagggccatggcggagatgaagcagagctgtttgaat |
123 |
Q |
| |
|
||||||||||| ||||||| |||| | | | ||||| | ||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3495501 |
tcattttgcatctttgcagtgaaactaattggtaagttgcaagatggcactgtctttttgaagaagggccatggcgatgatgaagcagagctgtttgaat |
3495402 |
T |
|
| Q |
124 |
tcacaacagacgaaggtgagggtgattatcttaaattgttgcattggttc--actctctcctattaatttgtttttatactaaccaacgaaagtgaatgt |
221 |
Q |
| |
|
||||||||||||| |||| ||| | | | |||| ||| || || || |||||| || || || ||||| ||| ||| ||| |||||||||| |
|
|
| T |
3495401 |
tcacaacagacga------gggtaatttttt--atttgtggcaatgttttttaccctctcccataaaattttttttgtaccaactgacggaagtgaatgt |
3495310 |
T |
|
| Q |
222 |
ctgttgtgttgagcagcgcaagtgactagagggcttgatagagctgtaatgagtatgaagaagggtgaggtagcatcgttgactattgcacctaagtatg |
321 |
Q |
| |
|
|||||| |||||||| |||||||| | ||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
3495309 |
ttgttgtattgagcagagcaagtgattgatgggctcgatagagctgtaatgaccatgaagaagggtgaggtagcattgttgactattgcacccgagtatg |
3495210 |
T |
|
| Q |
322 |
gttttggttcatccgagtctcgacaggaattggcagtggttcctgcaaattcaaccttacattatgaggttgagttagtattattcgtaaag |
413 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||| | ||||||||||| ||||||||||||||||||||| |||| ||||| |
|
|
| T |
3495209 |
cttttggttcatccgagtctcggcaggaattggcagtggtccctcctaattcaaccttgtattatgaggttgagttagtatcattcataaag |
3495118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 212 - 402
Target Start/End: Complemental strand, 14388913 - 14388723
Alignment:
| Q |
212 |
aagtgaatgtctgttgtgttgagcagcgcaagtgactagagggcttgatagagctgtaatgagtatgaagaagggtgaggtagcatcgttgactattgca |
311 |
Q |
| |
|
|||||||||| |||||| |||||||| |||||||| | ||||| |||| ||||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14388913 |
aagtgaatgtttgttgtattgagcagagcaagtgattgatgggctcgataaagctgtaatgaccatgaagaagggtgaggtagcattgttgactattgca |
14388814 |
T |
|
| Q |
312 |
cctaagtatggttttggttcatccgagtctcgacaggaattggcagtggttcctgcaaattcaaccttacattatgaggttgagttagtat |
402 |
Q |
| |
|
|| |||||| |||||||||||| ||||||| ||||||||||||||||| ||| | ||||||||||| ||||||||||||||||||||| |
|
|
| T |
14388813 |
cccgagtatgcttttggttcatctgagtctcagcaggaattggcagtggtccctcctaattcaaccttgtattatgaggttgagttagtat |
14388723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 206 - 413
Target Start/End: Complemental strand, 2876771 - 2876564
Alignment:
| Q |
206 |
caacgaaagtgaatgtctgttgtgttgagcagcgcaagtgactagagggcttgatagagctgtaatgagtatgaagaagggtgaggtagcatcgttgact |
305 |
Q |
| |
|
|||| |||||||||| | |||| |||||||| |||||||| | |||||||||||||||||| ||| |||||||||| ||||||||| | ||||||| |
|
|
| T |
2876771 |
caactaaagtgaatgctttttgtattgagcagagcaagtgattgatgggcttgatagagctgtactgaccatgaagaaggatgaggtagctttgttgact |
2876672 |
T |
|
| Q |
306 |
attgcacctaagtatggttttggttcatccgagtctcgacaggaattggcagtggttcctgcaaattcaaccttacattatgaggttgagttagtattat |
405 |
Q |
| |
|
||||| ||| | |||| |||||||||||| ||||||| ||||||||||||||||||||| | ||||||||| | |||||||||||||| |||||| || |
|
|
| T |
2876671 |
attgcgcctgaatatgcttttggttcatcagagtctcagcaggaattggcagtggttcctcctaattcaaccgtgtattatgaggttgagctagtatcat |
2876572 |
T |
|
| Q |
406 |
tcgtaaag |
413 |
Q |
| |
|
|||||||| |
|
|
| T |
2876571 |
tcgtaaag |
2876564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 206 - 413
Target Start/End: Original strand, 2794945 - 2795152
Alignment:
| Q |
206 |
caacgaaagtgaatgtctgttgtgttgagcagcgcaagtgactagagggcttgatagagctgtaatgagtatgaagaagggtgaggtagcatcgttgact |
305 |
Q |
| |
|
|||| |||||||||| | |||| |||||||| |||||||| | |||||||||| ||||||| ||| |||||||||||||||||||| | ||||||| |
|
|
| T |
2794945 |
caactaaagtgaatgctttttgtattgagcagagcaagtgattgatgggcttgataaagctgtactgaccatgaagaagggtgaggtagctttgttgact |
2795044 |
T |
|
| Q |
306 |
attgcacctaagtatggttttggttcatccgagtctcgacaggaattggcagtggttcctgcaaattcaaccttacattatgaggttgagttagtattat |
405 |
Q |
| |
|
||| ||||| | |||| |||||||||||| ||||||| ||||||||||||||||||||| | ||||||||| | |||||||||||||| |||||| | |
|
|
| T |
2795045 |
attacacctgaatatgcttttggttcatcagagtctcagcaggaattggcagtggttcctcctaattcaaccgtgtattatgaggttgagctagtatcgt |
2795144 |
T |
|
| Q |
406 |
tcgtaaag |
413 |
Q |
| |
|
|||||||| |
|
|
| T |
2795145 |
tcgtaaag |
2795152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 211 - 413
Target Start/End: Complemental strand, 2891214 - 2891014
Alignment:
| Q |
211 |
aaagtgaatgtctgttgtgttgagcagcgcaagtgactagagggcttgatagagctgtaatgagtatgaagaagggtgaggtagcatcgttgactattgc |
310 |
Q |
| |
|
|||||||||| | |||| |||||||| |||||||| | |||||||||| ||||||| ||| |||||||||||||||||||| | |||||||||| | |
|
|
| T |
2891214 |
aaagtgaatgctttttgtattgagcagagcaagtgattgatgggcttgataaagctgtactgaccatgaagaagggtgaggtagctttgttgactattac |
2891115 |
T |
|
| Q |
311 |
acctaagtatggttttggttcatccgagtctcgacaggaattggcagtggttcctgcaaattcaaccttacattatgaggttgagttagtattattcgta |
410 |
Q |
| |
|
||| | |||| |||||||||||| ||||||| ||||||||||||||||||||| | ||||||||| | |||||||||||||| |||||| |||||| |
|
|
| T |
2891114 |
gcctgaatatgcttttggttcatcagagtctcagcaggaattggcagtggttcctcctaattcaaccgt--attatgaggttgagctagtatcgttcgta |
2891017 |
T |
|
| Q |
411 |
aag |
413 |
Q |
| |
|
||| |
|
|
| T |
2891016 |
aag |
2891014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 211 - 413
Target Start/End: Original strand, 3144049 - 3144251
Alignment:
| Q |
211 |
aaagtgaatgtctgttgtgttgagcagcgcaagtgactagagggcttgatagagctgtaatgagtatgaagaagggtgaggtagcatcgttgactattgc |
310 |
Q |
| |
|
|||||||||| | |||| |||||||| |||||||| | |||||||||| ||||||| ||| |||||||| ||||||||||| | |||||||||| | |
|
|
| T |
3144049 |
aaagtgaatgctttttgtattgagcagagcaagtgattgatgggcttgataaagctgtactgaccatgaagaaaggtgaggtagctttgttgactattac |
3144148 |
T |
|
| Q |
311 |
acctaagtatggttttggttcatccgagtctcgacaggaattggcagtggttcctgcaaattcaaccttacattatgaggttgagttagtattattcgta |
410 |
Q |
| |
|
||| | |||| |||||||||||| ||||||| ||||||||||||||||||||| | ||||||||| | |||||||||||||| |||||| |||||| |
|
|
| T |
3144149 |
gcctgaatatgcttttggttcatcagagtctcagcaggaattggcagtggttcctcctaattcaaccgtgtattatgaggttgagctagtatcgttcgta |
3144248 |
T |
|
| Q |
411 |
aag |
413 |
Q |
| |
|
||| |
|
|
| T |
3144249 |
aag |
3144251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 254 - 402
Target Start/End: Original strand, 3158642 - 3158790
Alignment:
| Q |
254 |
gcttgatagagctgtaatgagtatgaagaagggtgaggtagcatcgttgactattgcacctaagtatggttttggttcatccgagtctcgacaggaattg |
353 |
Q |
| |
|
|||| ||| ||||||||||| |||||||||||||||||||| | |||||||||||| || | |||| |||||||||||| |||||||| ||||||||| |
|
|
| T |
3158642 |
gcttaatatagctgtaatgaccatgaagaagggtgaggtagctttgttgactattgcgccacaatatgcttttggttcatcagagtctcggcaggaattg |
3158741 |
T |
|
| Q |
354 |
gcagtggttcctgcaaattcaaccttacattatgaggttgagttagtat |
402 |
Q |
| |
|
|||||||||||| | ||||||||||| ||||| |||||||| |||||| |
|
|
| T |
3158742 |
gcagtggttcctcctaattcaaccttgtattatcaggttgagctagtat |
3158790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 379
Target Start/End: Complemental strand, 3500431 - 3500303
Alignment:
| Q |
251 |
agggcttgatagagctgtaatgagtatgaagaagggtgaggtagcatcgttgactattgcacctaagtatggttttggttcatccgagtctcgacaggaa |
350 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| | |||||||||| || | |||| ||||||||||| || ||| |||||| |
|
|
| T |
3500431 |
agggcttgatagagctgtaatgaccatgaagaagggtgaggtagcgttgttgactattccatatcgatatgcttttggttcattagacactccgcaggaa |
3500332 |
T |
|
| Q |
351 |
ttggcagtggttcctgcaaattcaacctt |
379 |
Q |
| |
|
|||||||||||||| | |||||||||| |
|
|
| T |
3500331 |
atggcagtggttcctccttattcaacctt |
3500303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 318 - 413
Target Start/End: Complemental strand, 2882709 - 2882614
Alignment:
| Q |
318 |
tatggttttggttcatccgagtctcgacaggaattggcagtggttcctgcaaattcaaccttacattatgaggttgagttagtattattcgtaaag |
413 |
Q |
| |
|
|||| |||||||||||| |||||||| ||||||||||||||||||||| | ||||||||||| ||||||||| ||| ||| || ||| |||||| |
|
|
| T |
2882709 |
tatgcttttggttcatcagagtctcggcaggaattggcagtggttcctcctaattcaaccttgtgttatgaggtcgagctagcatcatttgtaaag |
2882614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 310
Target Start/End: Complemental strand, 18847812 - 18847754
Alignment:
| Q |
252 |
gggcttgatagagctgtaatgagtatgaagaagggtgaggtagcatcgttgactattgc |
310 |
Q |
| |
|
|||||||||| ||||||| ||| ||||||||||||||||||||||| |||| |||||| |
|
|
| T |
18847812 |
gggcttgataaagctgtattgactatgaagaagggtgaggtagcattattgattattgc |
18847754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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