View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16640_low_12 (Length: 331)
Name: NF16640_low_12
Description: NF16640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16640_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 316
Target Start/End: Complemental strand, 7082135 - 7081839
Alignment:
| Q |
20 |
acacacacacctataaataccaactacaccccccaacctttccctcacctctacttcaacactaaaaccaaatctannnnnnnnnnnnnnnnnnacttgt |
119 |
Q |
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| T |
7082135 |
acacacacacctataaataccaactacaccccccaacctttctctcacctctacttcaacactaaaaccaaatctatctatctctccctctctcacttgt |
7082036 |
T |
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| Q |
120 |
tcccaaaatggaattttctggttttgaaggctttgaaaaaaggttagaacttcacttctttggtgatgatccaaatccaaccattaatcaccaactaggc |
219 |
Q |
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| T |
7082035 |
tcccaaaatggaattttctggttttgaaggctttgaaaaaagattagaacttcatttctttggtgatgatccaaatccaaccattaatcaccaactaggc |
7081936 |
T |
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| Q |
220 |
ctaagaaaacttgagtttgaatccattcaacaaatcctacaagctgttcaatgcacagttgtttcagcagttggaaactcttactttgatgcctatg |
316 |
Q |
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| T |
7081935 |
ctaagaaaacttgagtttgaatccattcaacaaatcctacaagctgttcaatgcacagttgtttcagcagttggaaactcttactttgatgcctatg |
7081839 |
T |
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Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 136 - 311
Target Start/End: Original strand, 49019792 - 49019958
Alignment:
| Q |
136 |
tctggttttgaaggctttgaaaaaaggttagaacttcacttctttggtgatgatccaaatccaaccattaatcaccaactaggcctaagaaaacttgagt |
235 |
Q |
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||||| |||||||| ||||| ||| |||| |||||||| |||||||| |||||||||| | ||| | ||||||||| ||||||||| |||| | |
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| T |
49019792 |
tctggctttgaaggatttgagaaacggttggaacttcatttctttggagatgatccaatt---acctt------ccaactaggtctaagaaaaattgatt |
49019882 |
T |
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| Q |
236 |
ttgaatccattcaacaaatcctacaagctgttcaatgcacagttgtttcagcagttggaaactcttactttgatgc |
311 |
Q |
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| T |
49019883 |
ttgaatcaatacaacaagttttagaagctgttcaatgcacagtggtttcagcagttggtaactcttactttgatgc |
49019958 |
T |
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