View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16640_low_15 (Length: 261)

Name: NF16640_low_15
Description: NF16640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16640_low_15
NF16640_low_15
[»] chr2 (11 HSPs)
chr2 (22-166)||(42001919-42002063)
chr2 (22-165)||(15432635-15432779)
chr2 (35-167)||(29909336-29909469)
chr2 (41-166)||(92022-92148)
chr2 (30-166)||(37417596-37417733)
chr2 (35-166)||(39073-39205)
chr2 (22-114)||(39833-39926)
chr2 (30-114)||(15372817-15372902)
chr2 (70-166)||(42879674-42879771)
chr2 (39-114)||(41706857-41706933)
chr2 (22-98)||(25619973-25620049)
[»] chr1 (12 HSPs)
chr1 (22-166)||(18183619-18183764)
chr1 (22-169)||(45380649-45380797)
chr1 (22-169)||(44158093-44158241)
chr1 (22-166)||(42134789-42134934)
chr1 (35-166)||(31801950-31802082)
chr1 (35-166)||(46638482-46638614)
chr1 (22-149)||(6575476-6575604)
chr1 (102-169)||(33682895-33682962)
chr1 (35-164)||(36895188-36895318)
chr1 (23-149)||(35479658-35479785)
chr1 (30-166)||(47269125-47269262)
chr1 (30-76)||(27940926-27940972)
[»] chr5 (10 HSPs)
chr5 (30-165)||(35292057-35292193)
chr5 (35-169)||(35395647-35395782)
chr5 (35-165)||(18728278-18728409)
chr5 (35-169)||(33256716-33256851)
chr5 (35-166)||(32087831-32087963)
chr5 (39-166)||(43317742-43317870)
chr5 (30-166)||(38177761-38177898)
chr5 (30-166)||(38204985-38205122)
chr5 (30-102)||(32838242-32838314)
chr5 (103-166)||(32837019-32837082)
[»] chr4 (10 HSPs)
chr4 (22-168)||(2350178-2350325)
chr4 (22-165)||(35996373-35996517)
chr4 (23-149)||(27625101-27625228)
chr4 (38-166)||(2827724-2827853)
chr4 (22-149)||(44558178-44558306)
chr4 (32-166)||(10372345-10372480)
chr4 (30-166)||(10762899-10763036)
chr4 (22-121)||(4519678-4519778)
chr4 (22-121)||(51041647-51041748)
chr4 (30-114)||(44794481-44794566)
[»] chr3 (12 HSPs)
chr3 (22-166)||(18429946-18430091)
chr3 (22-169)||(33852348-33852495)
chr3 (35-166)||(45898052-45898184)
chr3 (22-166)||(33112855-33113000)
chr3 (34-169)||(45256892-45257027)
chr3 (35-169)||(23888445-23888580)
chr3 (30-166)||(41020672-41020809)
chr3 (34-166)||(48634203-48634333)
chr3 (30-166)||(23774465-23774602)
chr3 (22-166)||(31887121-31887266)
chr3 (22-143)||(24382583-24382705)
chr3 (22-116)||(2977049-2977144)
[»] chr7 (11 HSPs)
chr7 (22-153)||(46812265-46812397)
chr7 (22-169)||(47341359-47341504)
chr7 (22-165)||(33038476-33038620)
chr7 (22-168)||(40784656-40784803)
chr7 (57-166)||(46996377-46996487)
chr7 (22-121)||(2167783-2167883)
chr7 (34-164)||(23954127-23954258)
chr7 (22-114)||(38613774-38613867)
chr7 (30-114)||(8423002-8423087)
chr7 (30-114)||(35344011-35344096)
chr7 (24-120)||(27955681-27955777)
[»] chr8 (12 HSPs)
chr8 (22-169)||(8654807-8654954)
chr8 (70-165)||(31821760-31821856)
chr8 (30-166)||(42897442-42897579)
chr8 (22-149)||(32822671-32822799)
chr8 (35-166)||(33750059-33750191)
chr8 (57-166)||(37525696-37525806)
chr8 (22-78)||(1320911-1320967)
chr8 (24-113)||(38882517-38882607)
chr8 (25-95)||(462111-462181)
chr8 (137-168)||(1320966-1320997)
chr8 (22-117)||(9184698-9184794)
chr8 (39-114)||(31200873-31200949)
[»] chr6 (5 HSPs)
chr6 (30-166)||(29077646-29077783)
chr6 (32-166)||(29112620-29112755)
chr6 (32-153)||(30641018-30641137)
chr6 (30-114)||(4641673-4641758)
chr6 (30-114)||(2968443-2968528)
[»] scaffold0204 (1 HSPs)
scaffold0204 (22-74)||(30232-30283)


Alignment Details
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 22 - 166
Target Start/End: Original strand, 42001919 - 42002063
Alignment:
Q  22 catttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaacatcatcatctccggcgatt 121  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  42001919 catttcagtcagaaacatcaaaaacatcattgatccttctccttcccgctaaaactttccccattatcacccctccaaaacatcatcatctccggcgatt 42002018  T
Q  122 atgacgtttttgaagtttctgtgttcggctgtgattaaaggtaac 166  Q
    || ||||||||||||||||||||||||||||||||||||||||||    
T  42002019 attacgtttttgaagtttctgtgttcggctgtgattaaaggtaac 42002063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 22 - 165
Target Start/End: Original strand, 15432635 - 15432779
Alignment:
Q  22 catttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgat 120  Q
    ||||||||||||||||||||||||||||||||  | | ||||||||| || |||||| | |||||||||||||||||||| |||||||||| ||||||||    
T  15432635 catttcagtcagaaacatcaaaaacatctttggccttcctccttcccgctcaaactttcaccattctcacccctccaaaatcatcatcatcaccggcgat 15432734  T
Q  121 tatgacgtttttgaagtttctgtgttcggctgtgattaaaggtaa 165  Q
    | ||||||||||||||||||||||||||||||| |||||||||||    
T  15432735 tctgacgtttttgaagtttctgtgttcggctgtaattaaaggtaa 15432779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 35 - 167
Target Start/End: Complemental strand, 29909469 - 29909336
Alignment:
Q  35 aacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaac-atcatcatctccggcgattatgacgtttttg 133  Q
    |||||||||||| || |||| |||||| |||||| ||||||||||| ||||| ||||||||||||||  |||||||||||||| |||| |||||||||||    
T  29909469 aacatcaaaaacgtccttgacccttcttcttcccgctaaaacttcctccattttcacccctccaaaattatcatcatctccggtgattctgacgtttttg 29909370  T
Q  134 aagtttctgtgttcggctgtgattaaaggtaacg 167  Q
    |||||| |||||||| ||||||||||||||||||    
T  29909369 aagtttgtgtgttcgactgtgattaaaggtaacg 29909336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 41 - 166
Target Start/End: Complemental strand, 92148 - 92022
Alignment:
Q  41 aaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgattatgacgtttttgaagttt 139  Q
    |||||| || |||| |||||| |||| | |||| |||||| ||||| |||||||||||||| |||||||||||||| ||||| |||| ||||||||||||    
T  92148 aaaaacgtccttgacccttcttcttctcgctaatacttcctccattttcacccctccaaaatcatcatcatctccgacgattctgacatttttgaagttt 92049  T
Q  140 ctgtgttcggctgtgattaaaggtaac 166  Q
     ||||||||||||||||||||||||||    
T  92048 gtgtgttcggctgtgattaaaggtaac 92022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 166
Target Start/End: Original strand, 37417596 - 37417733
Alignment:
Q  30 tcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgattatgacgt 128  Q
    ||||||||||||||||| || ||||  |||||||||||| ||||||||  | ||||||||||| |||||||| ||||||||||| || ||||| | ||||    
T  37417596 tcagaaacatcaaaaacgtccttgactcttctccttcccgctaaaactgtctccattctcacctctccaaaaccatcatcatcttcgacgattctcacgt 37417695  T
Q  129 ttttgaagtttctgtgttcggctgtgattaaaggtaac 166  Q
    ||||||||||  |||||||||||||| |||||||||||    
T  37417696 ttttgaagttgttgtgttcggctgtggttaaaggtaac 37417733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 35 - 166
Target Start/End: Complemental strand, 39205 - 39073
Alignment:
Q  35 aacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgattatgacgtttttg 133  Q
    ||||| |||||| || |||| |||||| |||| | |||| |||||| ||||| |||||||||||||| ||||||||| |||| ||||| |||  ||||||    
T  39205 aacataaaaaacgtccttgacccttcttcttctcgctaatacttcctccattttcacccctccaaaatcatcatcatgtccgacgattctgaaatttttg 39106  T
Q  134 aagtttctgtgttcggctgtgattaaaggtaac 166  Q
    |||||| ||||||||||||||||||||||||||    
T  39105 aagtttgtgtgttcggctgtgattaaaggtaac 39073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 39833 - 39926
Alignment:
Q  22 catttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctcc 114  Q
    ||||| |||||||||||||||||||||| ||||  |||||||||||| ||||||||| | |||||||||||||||||||| |||||||||||||    
T  39833 cattttagtcagaaacatcaaaaacatccttgactcttctccttcccgctaaaactttctccattctcacccctccaaaatcatcatcatctcc 39926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 15372817 - 15372902
Alignment:
Q  30 tcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctcc 114  Q
    |||||||||||||||||||| ||||  |||||||||||| ||||||| | | ||||| ||| |||||||||| |||||||||||||    
T  15372817 tcagaaacatcaaaaacatcattgactcttctccttcccgctaaaacgttctccattgtcaaccctccaaaatcatcatcatctcc 15372902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 42879674 - 42879771
Alignment:
Q  70 ctaaaacttcccccattctcacccctccaaaac-atcatcatctccggcgattatgacgtttttgaagtttctgtgttcggctgtgattaaaggtaac 166  Q
    ||||||||| | ||||||||||| ||||||||| |||||||||| |  ||||| | ||||||||||||||  ||||||||| |||| |||||||||||    
T  42879674 ctaaaactttctccattctcacctctccaaaaccatcatcatcttcaacgattctcacgtttttgaagttgttgtgttcggttgtggttaaaggtaac 42879771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 114
Target Start/End: Original strand, 41706857 - 41706933
Alignment:
Q  39 tcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctcc 114  Q
    ||||||||||| ||||  |||||||||||| ||||||| | | ||||| |||||||||||||| |||||||||||||    
T  41706857 tcaaaaacatccttgactcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcatcatctcc 41706933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 25619973 - 25620049
Alignment:
Q  22 catttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctcca 98  Q
    ||||||| |||||||||| |||||| || |||| ||||||||||  |  |||||||| | |||||||||||||||||    
T  25619973 catttcactcagaaacataaaaaacgtccttgacccttctccttttcgataaaactttctccattctcacccctcca 25620049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 6e-46; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 18183764 - 18183619
Alignment:
Q  22 catttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgat 120  Q
    ||||||| ||||||||||||||||| || |||| ||||||||||||| ||||||||| | ||||||||||| |||||||| |||||||||||||||||||    
T  18183764 catttcactcagaaacatcaaaaacgtcattgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctccggcgat 18183665  T
Q  121 tatgacgtttttgaagtttctgtgttcggctgtgattaaaggtaac 166  Q
    | | |||||||||||||||||||||||||||||| |||||||||||    
T  18183664 tctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaac 18183619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 22 - 169
Target Start/End: Complemental strand, 45380797 - 45380649
Alignment:
Q  22 catttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgat 120  Q
    |||||||||||||||||||||||||||| |||| | ||| | || || ||||||||| | |||||||||||||||||||| |||||||||| ||||||||    
T  45380797 catttcagtcagaaacatcaaaaacatccttgacctttcacatttccgctaaaactttctccattctcacccctccaaaatcatcatcatcaccggcgat 45380698  T
Q  121 tatgacgtttttgaagtttctgtgttcggctgtgattaaaggtaacgcc 169  Q
    | ||||||||||||||||| |||||||||||||||||||||||||||||    
T  45380697 tctgacgtttttgaagtttatgtgttcggctgtgattaaaggtaacgcc 45380649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 169
Target Start/End: Original strand, 44158093 - 44158241
Alignment:
Q  22 catttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgat 120  Q
    |||||||||||||||||||||||||||| |||| | ||| |||| | |||||||||| | |||||||||||| | ||||| |||||||||| ||||||||    
T  44158093 catttcagtcagaaacatcaaaaacatccttgacctttcacctttctactaaaactttctccattctcaccctttcaaaatcatcatcatcaccggcgat 44158192  T
Q  121 tatgacgtttttgaagtttctgtgttcggctgtgattaaaggtaacgcc 169  Q
    | |||| |||||||||||| |||||||||||||||||||||||||||||    
T  44158193 tctgacttttttgaagtttatgtgttcggctgtgattaaaggtaacgcc 44158241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 166
Target Start/End: Original strand, 42134789 - 42134934
Alignment:
Q  22 catttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgat 120  Q
    |||||||||||||||||||||||||||| |||| | |||  ||| || ||||||||| | |||||||||||||||||||| |||||| |||  |||||||    
T  42134789 catttcagtcagaaacatcaaaaacatccttgacctttcatctttccgctaaaactttctccattctcacccctccaaaatcatcataatcatcggcgat 42134888  T
Q  121 tatgacgtttttgaagtttctgtgttcggctgtgattaaaggtaac 166  Q
    | ||||||||||||||||| ||||||||| ||||||||||||||||    
T  42134889 tctgacgtttttgaagtttatgtgttcggatgtgattaaaggtaac 42134934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 35 - 166
Target Start/End: Original strand, 31801950 - 31802082
Alignment:
Q  35 aacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgattatgacgtttttg 133  Q
    |||||||||||| || |||| |||||| |||| | ||||||||||| ||| | |||| ||||||||| |||||||||||||||||||| |||| ||||||    
T  31801950 aacatcaaaaacgtcattgacccttcttcttctcgctaaaacttcctccactttcactcctccaaaatcatcatcatctccggcgattctgacatttttg 31802049  T
Q  134 aagtttctgtgttcggctgtgattaaaggtaac 166  Q
    |||||| ||||||||||||||||||||||||||    
T  31802050 aagtttgtgtgttcggctgtgattaaaggtaac 31802082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 35 - 166
Target Start/End: Complemental strand, 46638614 - 46638482
Alignment:
Q  35 aacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgattatgacgtttttg 133  Q
    |||||||||||| ||||||| |||||| |||  | ||||||||||| ||||| |||||||||||||| ||||||||||| || ||||| |||| ||||||    
T  46638614 aacatcaaaaacgtctttgacccttcttcttttcgctaaaacttcctccattttcacccctccaaaatcatcatcatcttcgacgattctgacatttttg 46638515  T
Q  134 aagtttctgtgttcggctgtgattaaaggtaac 166  Q
    |||||| ||||||||||||||||||||||||||    
T  46638514 aagtttgtgtgttcggctgtgattaaaggtaac 46638482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 22 - 149
Target Start/End: Original strand, 6575476 - 6575604
Alignment:
Q  22 catttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgat 120  Q
    ||||||||| ||||| || |||||| || |||| |||||||||||||||||||||||   |||||||||||||||||||| ||||||||||||||  |||    
T  6575476 catttcagttagaaaaataaaaaacgtccttgacccttctccttcccactaaaactttatccattctcacccctccaaaatcatcatcatctccgatgat 6575575  T
Q  121 tatgacgtttttgaagtttctgtgttcgg 149  Q
    | ||||||||||||||||| |||||||||    
T  6575576 tctgacgtttttgaagtttatgtgttcgg 6575604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 102 - 169
Target Start/End: Complemental strand, 33682962 - 33682895
Alignment:
Q  102 catcatcatctccggcgattatgacgtttttgaagtttctgtgttcggctgtgattaaaggtaacgcc 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33682962 catcatcatctccggcgattatgacgtttttgaagtttctgtgttcgactgtgattaaaggtaacgcc 33682895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 35 - 164
Target Start/End: Complemental strand, 36895318 - 36895188
Alignment:
Q  35 aacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgattatgacgtttttg 133  Q
    |||||||||||| || ||||||||||| |||| | |||||||| || ||||| ||| |||||||||| |||||||||||||| ||||| ||||  |||||    
T  36895318 aacatcaaaaacgtcattgatccttcttcttctcgctaaaactacctccattttcatccctccaaaatcatcatcatctccgacgattctgacagttttg 36895219  T
Q  134 aagtttctgtgttcggctgtgattaaaggta 164  Q
    |||||| | ||||||||||||||||||||||    
T  36895218 aagtttgtttgttcggctgtgattaaaggta 36895188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 149
Target Start/End: Complemental strand, 35479785 - 35479658
Alignment:
Q  23 atttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgatt 121  Q
    |||||||||||||| || |||||| || |||| |||||||||||||||||||||||    ||||||| || |||||||| ||||||||||| || |||||    
T  35479785 atttcagtcagaaaaataaaaaacgtccttgacccttctccttcccactaaaactttattcattctcgcctctccaaaatcatcatcatcttcgacgatt 35479686  T
Q  122 atgacgtttttgaagtttctgtgttcgg 149  Q
     ||| ||||||||||||||||| |||||    
T  35479685 ctgatgtttttgaagtttctgtattcgg 35479658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 166
Target Start/End: Complemental strand, 47269262 - 47269125
Alignment:
Q  30 tcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgattatgacgt 128  Q
    |||||| ||||||||||||| ||||  |||||||||||| ||||||| | | ||||| |||||||||||||| |||| ||||||||  ||||| || |||    
T  47269262 tcagaaccatcaaaaacatccttgactcttctccttcccgctaaaacgttctccattttcacccctccaaaatcatcctcatctccatcgattctggcgt 47269163  T
Q  129 ttttgaagtttctgtgttcggctgtgattaaaggtaac 166  Q
     ||||||||| ||||||||| | ||||| |||||||||    
T  47269162 gtttgaagttcctgtgttcgaccgtgatcaaaggtaac 47269125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 27940926 - 27940972
Alignment:
Q  30 tcagaaacatcaaaaacatctttgatccttctccttcccactaaaac 76  Q
    |||||||||||||||||||| ||||  |||||||||||| |||||||    
T  27940926 tcagaaacatcaaaaacatcattgactcttctccttcccgctaaaac 27940972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 30 - 165
Target Start/End: Complemental strand, 35292193 - 35292057
Alignment:
Q  30 tcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgattatgacgt 128  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||| | ||||||||||| |||||||| |||||||||||||||||||| | ||||    
T  35292193 tcagaaacatcaaaaacatccttgatccttctccttccccctaaaactttctccattctcacctctccaaaatcatcatcatctccggcgattctcacgt 35292094  T
Q  129 ttttgaagtttctgtgttcggctgtgattaaaggtaa 165  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  35292093 ttttaaagtttctgtgttcggctgtggttaaaggtaa 35292057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 35 - 169
Target Start/End: Original strand, 35395647 - 35395782
Alignment:
Q  35 aacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgattatgacgtttttg 133  Q
    ||||||||| || || |||| |||||| |||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| ||||| |||| ||||||    
T  35395647 aacatcaaacacgtccttgacccttcttcttcccgctaaaacttcctccattttcacccctccaaaatcatcatcatctccgacgattctgacatttttg 35395746  T
Q  134 aagtttctgtgttcggctgtgattaaaggtaacgcc 169  Q
    |||||| |||||||||||||||||||||||||||||    
T  35395747 aagtttgtgtgttcggctgtgattaaaggtaacgcc 35395782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 35 - 165
Target Start/End: Complemental strand, 18728409 - 18728278
Alignment:
Q  35 aacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgattatgacgtttttg 133  Q
    |||||||||||| ||||||| |||||| |||| | ||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |  | ||||||    
T  18728409 aacatcaaaaacgtctttgacccttcttcttctcgctaaaacttcctccattttcacccctccaaaatcatcatcatctccggcgattctaccatttttg 18728310  T
Q  134 aagtttctgtgttcggctgtgattaaaggtaa 165  Q
    |||||| |||||||||||||||||||||||||    
T  18728309 aagtttgtgtgttcggctgtgattaaaggtaa 18728278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 35 - 169
Target Start/End: Original strand, 33256716 - 33256851
Alignment:
Q  35 aacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgattatgacgtttttg 133  Q
    ||||||||||||  | ||||  ||||| |||| ||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |||| ||||||    
T  33256716 aacatcaaaaacgaccttgacacttcttcttctcactaaaacttcctccattttcacccctccaaaatcatcatcatctccggcgattttgacatttttg 33256815  T
Q  134 aagtttctgtgttcggctgtgattaaaggtaacgcc 169  Q
    |||||| ||||||||| |||||||||||||||||||    
T  33256816 aagtttgtgtgttcggttgtgattaaaggtaacgcc 33256851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 35 - 166
Target Start/End: Original strand, 32087831 - 32087963
Alignment:
Q  35 aacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgattatgacgtttttg 133  Q
    |||||||||||| || |||| |||||| |||| | ||||||||||| |||||  ||||||||||||| ||||||||||||| ||||||||  | ||||||    
T  32087831 aacatcaaaaacgtccttgacccttcttcttctcgctaaaacttcctccatttccacccctccaaaatcatcatcatctccagcgattataccatttttg 32087930  T
Q  134 aagtttctgtgttcggctgtgattaaaggtaac 166  Q
    |||||| ||||||||||||||||||||||||||    
T  32087931 aagtttgtgtgttcggctgtgattaaaggtaac 32087963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 166
Target Start/End: Complemental strand, 43317870 - 43317742
Alignment:
Q  39 tcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgattatgacgtttttgaagt 137  Q
    ||||||||||| |||| ||||||||| ||| ||||||||| | ||||||||||| | |||||| |||||||||||||||||||| |   ||||||||| |    
T  43317870 tcaaaaacatccttgacccttctcctcccccctaaaactttctccattctcacctccccaaaatcatcatcatctccggcgattctcttgtttttgaaat 43317771  T
Q  138 ttctgtgttcggctgtgattaaaggtaac 166  Q
    |||||||||||| |||| |||||||||||    
T  43317770 ttctgtgttcggttgtggttaaaggtaac 43317742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 166
Target Start/End: Complemental strand, 38177898 - 38177761
Alignment:
Q  30 tcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgattatgacgt 128  Q
    |||||||||| |||||| || ||||  |||||||||||  ||||||||| | ||||||||||| |||||||| ||||||||||| ||  |||| | ||||    
T  38177898 tcagaaacataaaaaacgtccttgactcttctccttcctgctaaaactttctccattctcacctctccaaaaccatcatcatcttcgatgattctcacgt 38177799  T
Q  129 ttttgaagtttctgtgttcggctgtgattaaaggtaac 166  Q
    ||||||||||  ||||||||| |||| |||||||||||    
T  38177798 ttttgaagttgttgtgttcggttgtggttaaaggtaac 38177761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 166
Target Start/End: Complemental strand, 38205122 - 38204985
Alignment:
Q  30 tcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgattatgacgt 128  Q
    |||||||||| |||||| || ||||  |||||||||||  ||||||||| | ||||||||||| |||||||| ||||||||||| ||  |||| | ||||    
T  38205122 tcagaaacataaaaaacgtccttgactcttctccttcctgctaaaactttctccattctcacctctccaaaaccatcatcatcttcgatgattctcacgt 38205023  T
Q  129 ttttgaagtttctgtgttcggctgtgattaaaggtaac 166  Q
    ||||||||||  ||||||||| |||| |||||||||||    
T  38205022 ttttgaagttgttgtgttcggttgtggttaaaggtaac 38204985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 32838314 - 32838242
Alignment:
Q  30 tcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaac 102  Q
    |||||||||| |||||| || ||||  |||||||||||| ||||||||| | ||||||||||| |||||||||    
T  32838314 tcagaaacataaaaaacgtcattgactcttctccttcccgctaaaactttctccattctcacctctccaaaac 32838242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 32837082 - 32837019
Alignment:
Q  103 atcatcatctccggcgattatgacgtttttgaagtttctgtgttcggctgtgattaaaggtaac 166  Q
    |||||||||| || ||||| | ||||||||||||||  |||||||||||||| |||||||||||    
T  32837082 atcatcatcttcgacgattttcacgtttttgaagttgttgtgttcggctgtggttaaaggtaac 32837019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 9e-45; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 22 - 168
Target Start/End: Complemental strand, 2350325 - 2350178
Alignment:
Q  22 catttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgat 120  Q
    ||||||||| |||||||||||||||||| ||||  |||||||||||||||||||||| | |||||||||||||||||||| ||| |||||||||||||||    
T  2350325 catttcagttagaaacatcaaaaacatccttgactcttctccttcccactaaaactttctccattctcacccctccaaaatcataatcatctccggcgat 2350226  T
Q  121 tatgacgtttttgaagtttctgtgttcggctgtgattaaaggtaacgc 168  Q
    | |||||||||||||||| ||||||||  ||||||| |||||||||||    
T  2350225 tctgacgtttttgaagttcctgtgttcaactgtgatcaaaggtaacgc 2350178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 165
Target Start/End: Original strand, 35996373 - 35996517
Alignment:
Q  22 catttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgat 120  Q
    ||||||||||||||||||||||||||| |||||  |||||||||||| ||||||||| | ||| |||||||||||||||| |||||||||||||| ||||    
T  35996373 catttcagtcagaaacatcaaaaacatatttgactcttctccttcccgctaaaactttctccagtctcacccctccaaaatcatcatcatctccgccgat 35996472  T
Q  121 tatgacgtttttgaagtttctgtgttcggctgtgattaaaggtaa 165  Q
    | |||||||||||||||| | |||||||  |||||| ||||||||    
T  35996473 tctgacgtttttgaagttcccgtgttcgattgtgatcaaaggtaa 35996517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 23 - 149
Target Start/End: Original strand, 27625101 - 27625228
Alignment:
Q  23 atttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgatt 121  Q
    |||||||||||||| || |||||| || |||| |||||||||||||||||||||||   |||||||||||||||||||| ||||||||||||||  ||||    
T  27625101 atttcagtcagaaaaataaaaaacgtcattgacccttctccttcccactaaaactttatccattctcacccctccaaaatcatcatcatctccgatgatt 27625200  T
Q  122 atgacgtttttgaagtttctgtgttcgg 149  Q
     |||||||||||||||||||||||||||    
T  27625201 ctgacgtttttgaagtttctgtgttcgg 27625228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 38 - 166
Target Start/End: Original strand, 2827724 - 2827853
Alignment:
Q  38 atcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgattatgacgtttttgaag 136  Q
    ||||||||| || |||| |||||| |||| | ||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |||| |||||||||    
T  2827724 atcaaaaacgtccttgacccttcttcttctcgctaaaacttcctccattttcacccctccaaaatcatcatcatctccggcgattctgacatttttgaag 2827823  T
Q  137 tttctgtgttcggctgtgattaaaggtaac 166  Q
    ||| ||||||||| ||||||||||||||||    
T  2827824 tttgtgtgttcggttgtgattaaaggtaac 2827853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 149
Target Start/End: Complemental strand, 44558306 - 44558178
Alignment:
Q  22 catttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgat 120  Q
    ||||||||||||||| ||||||||| || |||| ||||||||||||||||||||||    |||||||||||||||||||| ||||||||||| ||  |||    
T  44558306 catttcagtcagaaaaatcaaaaacgtccttgacccttctccttcccactaaaactctatccattctcacccctccaaaatcatcatcatcttcgatgat 44558207  T
Q  121 tatgacgtttttgaagtttctgtgttcgg 149  Q
    | |||||||||||||||||||||||||||    
T  44558206 tctgacgtttttgaagtttctgtgttcgg 44558178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 32 - 166
Target Start/End: Complemental strand, 10372480 - 10372345
Alignment:
Q  32 agaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgattatgacgttt 130  Q
    |||||||||||||||||| ||||  |||||||||||| ||||||| | | ||||| |||||||||||||| |||||||||||||  ||||| || | |||    
T  10372480 agaaacatcaaaaacatccttgactcttctccttcccgctaaaacattctccattgtcacccctccaaaatcatcatcatctccatcgattctggcattt 10372381  T
Q  131 ttgaagtttctgtgttcggctgtgattaaaggtaac 166  Q
    |||||||| ||||||||| ||||||| |||||||||    
T  10372380 ttgaagttcctgtgttcgactgtgatcaaaggtaac 10372345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 30 - 166
Target Start/End: Original strand, 10762899 - 10763036
Alignment:
Q  30 tcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgattatgacgt 128  Q
    |||||||||||||||||||| ||||  |||||||||||| ||||||| | | ||||| |||||||||||||| |||||||||||||  ||||| || |||    
T  10762899 tcagaaacatcaaaaacatccttgactcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcatcatctccatcgattctggcgt 10762998  T
Q  129 ttttgaagtttctgtgttcggctgtgattaaaggtaac 166  Q
     ||||||||| ||||||||| | ||||| |||||||||    
T  10762999 gtttgaagttcctgtgttcgaccgtgatcaaaggtaac 10763036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 4519678 - 4519778
Alignment:
Q  22 catttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgat 120  Q
    ||||||| |||||||||||||||||||| |||| |||||| |||||| ||||||||| | ||||||||||| |||||||| |||||||||||||||||||    
T  4519678 catttcactcagaaacatcaaaaacatccttgacccttcttcttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctccggcgat 4519777  T
Q  121 t 121  Q
    |    
T  4519778 t 4519778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 51041748 - 51041647
Alignment:
Q  22 catttcagtcagaaacatcaaaaacatctttgatccttctcctt-cccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcga 119  Q
    ||||||| ||||||||||||||||| || |||| |||||||||| ||| ||||| ||| | |||||||||||||||||||| |||||||||||||| |||    
T  51041748 catttcactcagaaacatcaaaaacgtcattgacccttctccttccccgctaaagctttctccattctcacccctccaaaatcatcatcatctccgacga 51041649  T
Q  120 tt 121  Q
    ||    
T  51041648 tt 51041647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 44794566 - 44794481
Alignment:
Q  30 tcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctcc 114  Q
    |||||||||| ||||||||||||||  |||||||||||| ||||||| | | ||||| |||||||||||||| |||||| ||||||    
T  44794566 tcagaaacattaaaaacatctttgactcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcataatctcc 44794481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 18430091 - 18429946
Alignment:
Q  22 catttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgat 120  Q
    |||||||||||||| ||||||||||||| |||| | ||| | || || ||||||||| | |||||||||||||||||||| |||||||||| ||||||||    
T  18430091 catttcagtcagaagcatcaaaaacatccttgacctttcacatttccgctaaaactttctccattctcacccctccaaaatcatcatcatcaccggcgat 18429992  T
Q  121 tatgacgtttttgaagtttctgtgttcggctgtgattaaaggtaac 166  Q
    | ||||||||||||||||||||||||||||||||||||||||||||    
T  18429991 tttgacgtttttgaagtttctgtgttcggctgtgattaaaggtaac 18429946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 169
Target Start/End: Complemental strand, 33852495 - 33852348
Alignment:
Q  22 catttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgat 120  Q
    |||||||||||||||||| ||||||||| ||||   ||| |||| || ||||||||| | |||||||||||||||||||| |||||||||| ||||||||    
T  33852495 catttcagtcagaaacataaaaaacatccttgacttttcacctttccgctaaaactttctccattctcacccctccaaaatcatcatcatcaccggcgat 33852396  T
Q  121 tatgacgtttttgaagtttctgtgttcggctgtgattaaaggtaacgcc 169  Q
    | |||||||||||||||||||||||| ||||||||||||||||||||||    
T  33852395 tctgacgtttttgaagtttctgtgtt-ggctgtgattaaaggtaacgcc 33852348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 35 - 166
Target Start/End: Complemental strand, 45898184 - 45898052
Alignment:
Q  35 aacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgattatgacgtttttg 133  Q
    |||||||||||| || |||| |||||| |||| | ||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |||| ||||||    
T  45898184 aacatcaaaaacgtccttgacccttcttcttctcgctaaaacttcctccattttcacccctccaaaaacatcatcatctccggcgattctgacatttttg 45898085  T
Q  134 aagtttctgtgttcggctgtgattaaaggtaac 166  Q
    |||||| ||||||||| ||||||||||||||||    
T  45898084 aagtttgtgtgttcggttgtgattaaaggtaac 45898052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 33113000 - 33112855
Alignment:
Q  22 catttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgat 120  Q
    ||||||| ||| |||||| |||||| ||| ||| ||||||| ||||| ||||||||| | ||||||||||| |||||||| ||||||||||||| |||||    
T  33113000 catttcactcataaacataaaaaacgtctctgacccttctcattcccgctaaaactttctccattctcacctctccaaaatcatcatcatctccagcgat 33112901  T
Q  121 tatgacgtttttgaagtttctgtgttcggctgtgattaaaggtaac 166  Q
    | | |||||||||||||||||||||||| ||||| |||||||||||    
T  33112900 tctcacgtttttgaagtttctgtgttcgactgtggttaaaggtaac 33112855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 34 - 169
Target Start/End: Complemental strand, 45257027 - 45256892
Alignment:
Q  34 aaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgattatgacgttttt 132  Q
    |||||||||||||||| |||| | ||  |||| || ||||||||| | |||||||||||||||||||| ||||||| || | ||||||| ||||||||||    
T  45257027 aaacatcaaaaacatccttgaccttttacctttccgctaaaactttctccattctcacccctccaaaatcatcatc-tcactggcgattctgacgttttt 45256929  T
Q  133 gaagtttctgtgttcggctgtgattaaaggtaacgcc 169  Q
    ||||||||| |||||||||||||||||||||||||||    
T  45256928 gaagtttctatgttcggctgtgattaaaggtaacgcc 45256892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 169
Target Start/End: Complemental strand, 23888580 - 23888445
Alignment:
Q  35 aacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgattatgacgtttttg 133  Q
    ||||||||||||  | |||| |||||| |||| | ||||||||||| ||||| |||||||||||||| |||||||||||||| ||||| |||| |||||     
T  23888580 aacatcaaaaacgaccttgacccttcttcttctcgctaaaacttcctccattttcacccctccaaaatcatcatcatctccgacgattctgacatttttt 23888481  T
Q  134 aagtttctgtgttcggctgtgattaaaggtaacgcc 169  Q
    |||||| ||||||||| |||||||||||||||||||    
T  23888480 aagtttgtgtgttcggttgtgattaaaggtaacgcc 23888445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 30 - 166
Target Start/End: Complemental strand, 41020809 - 41020672
Alignment:
Q  30 tcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgattatgacgt 128  Q
    |||||||||||||||||||| ||||  |||||||||||| ||||||| | | ||||| |||||||||||||| |||||||||||||  ||||| || |||    
T  41020809 tcagaaacatcaaaaacatccttgactcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcatcatctccatcgattctggcgt 41020710  T
Q  129 ttttgaagtttctgtgttcggctgtgattaaaggtaac 166  Q
     ||||||||| ||||||||| | ||||| |||||||||    
T  41020709 gtttgaagttcctgtgttcgaccgtgatcaaaggtaac 41020672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 166
Target Start/End: Original strand, 48634203 - 48634333
Alignment:
Q  34 aaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaacatcatcatctccggcgattatgacgtttttg 133  Q
    ||||||||||||| || ||||  |||||||||||| ||||||||| | ||||||||||| |||||||||  ||||||||||| |||||   |||||||||    
T  48634203 aaacatcaaaaacgtccttgactcttctccttcccgctaaaactttctccattctcacctctccaaaac--catcatctccgacgattcgcacgtttttg 48634300  T
Q  134 aagtttctgtgttcggctgtgattaaaggtaac 166  Q
    |||||  |||||||||||||| |||||||||||    
T  48634301 aagttgttgtgttcggctgtggttaaaggtaac 48634333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 166
Target Start/End: Original strand, 23774465 - 23774602
Alignment:
Q  30 tcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgattatgacgt 128  Q
    |||||||||| |||||| || ||||  |||||||||||| ||||||||| | ||||||||||| |||||||| ||||||||||| || ||||| | | ||    
T  23774465 tcagaaacataaaaaacgtccttgactcttctccttcccgctaaaactttctccattctcacctctccaaaaccatcatcatcttcgacgattctcatgt 23774564  T
Q  129 ttttgaagtttctgtgttcggctgtgattaaaggtaac 166  Q
    | ||||||||  |||||||||||||| |||||||||||    
T  23774565 tcttgaagttgttgtgttcggctgtggttaaaggtaac 23774602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 31887266 - 31887121
Alignment:
Q  22 catttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgat 120  Q
    ||||||| ||| ||| ||||||||| || |||| | ||||||||||| ||||||||| | |||||| |||| ||  |||| |||| ||||||||||||||    
T  31887266 catttcactcaaaaatatcaaaaacgtcattgaacattctccttcccgctaaaactttctccattcccacctctataaaatcatcgtcatctccggcgat 31887167  T
Q  121 tatgacgtttttgaagtttctgtgttcggctgtgattaaaggtaac 166  Q
    | |  || ||||||||||||||||||||||||||  ||||||||||    
T  31887166 tctcgcggttttgaagtttctgtgttcggctgtggctaaaggtaac 31887121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 24382705 - 24382583
Alignment:
Q  22 catttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgat 120  Q
    ||||||| |||||||||| |||||| || |||   |||||||||||| ||||||| | | ||||| |||||||| ||||| |||||||||||||| ||||    
T  24382705 catttcactcagaaacataaaaaacgtcattgtctcttctccttcccgctaaaacattctccattttcaccccttcaaaatcatcatcatctccgacgat 24382606  T
Q  121 tatgacgtttttgaagtttctgt 143  Q
    | | |||||||| ||||||||||    
T  24382605 tctcacgtttttaaagtttctgt 24382583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 2977144 - 2977049
Alignment:
Q  22 catttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccgg 116  Q
    ||||||| ||||||||||||||||  |   ||| |||||| |||||| | ||||| | | ||||||||||| |||||||| |||||||||||||||    
T  2977144 catttcactcagaaacatcaaaaatgttcgtgacccttcttcttcccgcaaaaaccttctccattctcacctctccaaaatcatcatcatctccgg 2977049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 46812397 - 46812265
Alignment:
Q  22 catttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgat 120  Q
    |||||||||||||||||||||||||  | |||| | ||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||| ||||    
T  46812397 catttcagtcagaaacatcaaaaacgaccttgacctttctccttcccactaaaactttctccattctcacccctccaaaatcatcatcatctccgacgat 46812298  T
Q  121 tatgacgtttttgaagtttctgtgttcggctgt 153  Q
    | |||||||||||||||||||||||||||||||    
T  46812297 tctgacgtttttgaagtttctgtgttcggctgt 46812265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 169
Target Start/End: Complemental strand, 47341504 - 47341359
Alignment:
Q  22 catttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaacatcatcatctccggcgatt 121  Q
    ||||||||| |||||||||||||||||| ||||   ||| |||| || ||||||||| |  |||||||||||||||||||  |||||||| ||| |||||    
T  47341504 catttcagtgagaaacatcaaaaacatccttgacatttcacctttccgctaaaactttcttcattctcacccctccaaaa--tcatcatcaccgacgatt 47341407  T
Q  122 atgacgtttttgaagtttctgtgttcggctgtgattaaaggtaacgcc 169  Q
     ||| |||||||| ||||||||||||||||||||||||||||||||||    
T  47341406 ctgaagtttttgacgtttctgtgttcggctgtgattaaaggtaacgcc 47341359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 22 - 165
Target Start/End: Complemental strand, 33038620 - 33038476
Alignment:
Q  22 catttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgat 120  Q
    ||||||| ||||||||||||||||| || || | ||||| ||||||| ||||||||| | |||||| ||||||||||||| |||||||||||||||||||    
T  33038620 catttcactcagaaacatcaaaaacgtcattaacccttccccttcccgctaaaactttctccattcccacccctccaaaatcatcatcatctccggcgat 33038521  T
Q  121 tatgacgtttttgaagtttctgtgttcggctgtgattaaaggtaa 165  Q
    | | | ||||||||||||| || ||||  ||||||||||||||||    
T  33038520 tctcatgtttttgaagtttatgcgttcaactgtgattaaaggtaa 33038476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 168
Target Start/End: Original strand, 40784656 - 40784803
Alignment:
Q  22 catttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgat 120  Q
    ||||||| | |||||||| ||||| ||| |||| ||||||||||||| ||||||||| | |||||||||||||||||||| ||||| |||||  ||||||    
T  40784656 catttcacttagaaacataaaaaatatcattgacccttctccttcccgctaaaactttctccattctcacccctccaaaatcatcaccatctttggcgat 40784755  T
Q  121 tatgacgtttttgaagtttctgtgttcggctgtgattaaaggtaacgc 168  Q
    | | |||| |||||||||| ||||||||| |||| |||||||||||||    
T  40784756 tctcacgtgtttgaagtttttgtgttcggttgtggttaaaggtaacgc 40784803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 57 - 166
Target Start/End: Complemental strand, 46996487 - 46996377
Alignment:
Q  57 cttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgattatgacgtttttgaagtttctgtgttcggctgtga 155  Q
    ||||| |||| | ||||||||||| ||||| |||||||||||||| |||||||||||||| ||||| |||| |||||||||||| |||||||||||||||    
T  46996487 cttcttcttctcgctaaaacttcctccattttcacccctccaaaatcatcatcatctccgacgattctgacatttttgaagtttgtgtgttcggctgtga 46996388  T
Q  156 ttaaaggtaac 166  Q
    |||||||||||    
T  46996387 ttaaaggtaac 46996377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 2167783 - 2167883
Alignment:
Q  22 catttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgat 120  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||||||| ||||||||| | ||||||||||| |||||||| |||| ||||||||||||||    
T  2167783 catttcaatcagaaacatcaaaaacgtctttgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcttcatctccggcgat 2167882  T
Q  121 t 121  Q
    |    
T  2167883 t 2167883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 34 - 164
Target Start/End: Original strand, 23954127 - 23954258
Alignment:
Q  34 aaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgattatgacgttttt 132  Q
    |||||| |||||| || ||||  |||||||| ||  ||||||||| | ||||||||||| |||||||| ||||||||||||  |||||| | ||||||||    
T  23954127 aaacataaaaaacgtccttgactcttctcctacctgctaaaactttctccattctcacctctccaaaatcatcatcatctctcgcgattctcacgttttt 23954226  T
Q  133 gaagtttctgtgttcggctgtgattaaaggta 164  Q
    |||||||||| ||||||||||| |||||||||    
T  23954227 gaagtttctgagttcggctgtggttaaaggta 23954258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 38613774 - 38613867
Alignment:
Q  22 catttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctcc 114  Q
    ||||||| ||||||||||||||||  || |||| ||||||||||||| ||||||||| | | ||||||||| |||||||| |||||||||||||    
T  38613774 catttcactcagaaacatcaaaaatgtcattgacccttctccttcccgctaaaactttctctattctcacctctccaaaatcatcatcatctcc 38613867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 8423087 - 8423002
Alignment:
Q  30 tcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctcc 114  Q
    |||||||||||||||||||| ||||  |||||||||||| ||||||| | | ||||| ||| |||||||||| |||||||||||||    
T  8423087 tcagaaacatcaaaaacatccttgactcttctccttcccgctaaaacgttctccattgtcatccctccaaaatcatcatcatctcc 8423002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 35344096 - 35344011
Alignment:
Q  30 tcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctcc 114  Q
    |||||||||||||||||||| || |  |||||||||||| ||||||| | | ||||| |||||||||||||| |||||||||||||    
T  35344096 tcagaaacatcaaaaacatccttaactcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcatcatctcc 35344011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 27955681 - 27955777
Alignment:
Q  24 tttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgat 120  Q
    |||||||||||||||| |||||| || |||| |||||| |||||| || |||| |  |||||||||||| |||||||| |||||||||||||| ||||    
T  27955681 tttcagtcagaaacattaaaaacgtccttgacccttctgcttcccgcttaaacct-tcccattctcacctctccaaaatcatcatcatctccgacgat 27955777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 169
Target Start/End: Original strand, 8654807 - 8654954
Alignment:
Q  22 catttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgat 120  Q
    |||||||||||||||||||||||||||| ||||  |||||||||||| ||||||||| | |||||||||||||||||||| ||||||||||||| || ||    
T  8654807 catttcagtcagaaacatcaaaaacatcattgactcttctccttcccgctaaaactttctccattctcacccctccaaaatcatcatcatctcc-gcaat 8654905  T
Q  121 tatgacgtttttgaagtttctgtgttcggctgtgattaaaggtaacgcc 169  Q
    | |||| ||||||||||| ||||||||| ||||||| ||||||||||||    
T  8654906 tctgacatttttgaagttcctgtgttcgactgtgatcaaaggtaacgcc 8654954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 70 - 165
Target Start/End: Original strand, 31821760 - 31821856
Alignment:
Q  70 ctaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgattatgacgtttttgaagtttctgtgttcggctgtgattaaaggtaa 165  Q
    ||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |||| |||||||||||| ||||||||| |||||||||||||||    
T  31821760 ctaaaacttcctccattttcacccctccaaaatcatcatcatctccggcgattctgacatttttgaagtttgtgtgttcggttgtgattaaaggtaa 31821856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 30 - 166
Target Start/End: Complemental strand, 42897579 - 42897442
Alignment:
Q  30 tcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaac-atcatcatctccggcgattatgacgt 128  Q
    |||||||||| |||||| |  ||||  |||||||||||| ||||||||| | ||||||||||| ||||||||| |||||||||| || ||||| | ||||    
T  42897579 tcagaaacataaaaaacgttcttgactcttctccttcccgctaaaactttctccattctcaccactccaaaaccatcatcatcttcgacgattctcacgt 42897480  T
Q  129 ttttgaagtttctgtgttcggctgtgattaaaggtaac 166  Q
    ||||||||||  |||||||||||||| |||||||||||    
T  42897479 ttttgaagttgttgtgttcggctgtggttaaaggtaac 42897442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 149
Target Start/End: Original strand, 32822671 - 32822799
Alignment:
Q  22 catttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgat 120  Q
    ||||||||||||||| || |||||| || |||| |||||||||||||||||||||||    ||||||| || || ||||| |||||||||||||| ||||    
T  32822671 catttcagtcagaaaaataaaaaacgtcattgacccttctccttcccactaaaactttattcattctcgcctcttcaaaatcatcatcatctccgacgat 32822770  T
Q  121 tatgacgtttttgaagtttctgtgttcgg 149  Q
    | ||||||||||||||||||||| |||||    
T  32822771 tctgacgtttttgaagtttctgtattcgg 32822799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 35 - 166
Target Start/End: Complemental strand, 33750191 - 33750059
Alignment:
Q  35 aacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgattatgacgtttttg 133  Q
    |||||||||||| || |||| |||| | |||| | |||||||||||  |||| |||||||||||||| ||||||||||||||  |||| |||| ||||||    
T  33750191 aacatcaaaaacgtccttgaccctttttcttctcgctaaaacttccttcattttcacccctccaaaatcatcatcatctccgatgattctgacatttttg 33750092  T
Q  134 aagtttctgtgttcggctgtgattaaaggtaac 166  Q
    |||||| ||||||| ||| ||||||||||||||    
T  33750091 aagtttgtgtgttctgctctgattaaaggtaac 33750059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 57 - 166
Target Start/End: Complemental strand, 37525806 - 37525696
Alignment:
Q  57 cttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgattatgacgtttttgaagtttctgtgttcggctgtga 155  Q
    |||||||||||| ||||||||| |  ||||||||||||||||||| |||||||||||| ||||||| | |||| | |||||||| ||||||||| ||||     
T  37525806 cttctccttcccgctaaaactttcttcattctcacccctccaaaatcatcatcatctctggcgattctcacgtctgtgaagtttttgtgttcggttgtgg 37525707  T
Q  156 ttaaaggtaac 166  Q
    |||||||||||    
T  37525706 ttaaaggtaac 37525696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 1320911 - 1320967
Alignment:
Q  22 catttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaactt 78  Q
    ||||||||||||||||||||||||||||||||| | ||| |||| ||||||||||||    
T  1320911 catttcagtcagaaacatcaaaaacatctttgacctttcacctttccactaaaactt 1320967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 38882607 - 38882517
Alignment:
Q  24 tttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctc 113  Q
    ||||| |||||||||| |||||| || |||| ||||||||||||||||||| | | | ||||| ||||| |||||||| ||||||||||||    
T  38882607 tttcactcagaaacataaaaaacgtcattgacccttctccttcccactaaagccttctccattttcaccgctccaaaatcatcatcatctc 38882517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 462181 - 462111
Alignment:
Q  25 ttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccct 95  Q
    |||| |||||||||| || ||| || |||| ||||||||||||| ||||||||| | ||||||||||||||    
T  462181 ttcactcagaaacataaagaacgtcattgacccttctccttcccgctaaaactttctccattctcacccct 462111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 168
Target Start/End: Original strand, 1320966 - 1320997
Alignment:
Q  137 tttctgtgttcggctgtgattaaaggtaacgc 168  Q
    ||||||||||||||||||||||||||||||||    
T  1320966 tttctgtgttcggctgtgattaaaggtaacgc 1320997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 117
Target Start/End: Original strand, 9184698 - 9184794
Alignment:
Q  22 catttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggc 117  Q
    ||||||| ||||| |||||||| || ||  ||||| ||||||||||| ||||||| | |  |||  ||||| |||||||| ||||||||||||||||    
T  9184698 catttcactcagacacatcaaatacgtccatgatctttctccttcccgctaaaaccttcatcatcttcacctctccaaaatcatcatcatctccggc 9184794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 31200949 - 31200873
Alignment:
Q  39 tcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctcc 114  Q
    ||||||||||| ||||   ||||| ||||| ||||||| | | ||||| |||||||||||||| |||||||||||||    
T  31200949 tcaaaaacatccttgacttttctctttcccgctaaaacgttctccattgtcacccctccaaaatcatcatcatctcc 31200873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 30 - 166
Target Start/End: Original strand, 29077646 - 29077783
Alignment:
Q  30 tcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgattatgacgt 128  Q
    |||||||||||||||||||| ||||  |||||||||||| ||||||| | | ||||| |||||||||||||| |||||||||||||  ||||| || |||    
T  29077646 tcagaaacatcaaaaacatccttgactcttctccttcccgctaaaacgttctccattttcacccctccaaaatcatcatcatctccatcgattctggcgt 29077745  T
Q  129 ttttgaagtttctgtgttcggctgtgattaaaggtaac 166  Q
     ||||||||| ||||||||| | ||||| |||||||||    
T  29077746 gtttgaagttcctgtgttcgaccgtgatcaaaggtaac 29077783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 166
Target Start/End: Original strand, 29112620 - 29112755
Alignment:
Q  32 agaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgattatgacgttt 130  Q
    |||||||||||||||||| ||||  |||||||||||| ||||||| | | ||||| |||||||||||||| |||||||||||||  ||||| || ||| |    
T  29112620 agaaacatcaaaaacatccttgactcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcatcatctccatcgattctggcgtgt 29112719  T
Q  131 ttgaagtttctgtgttcggctgtgattaaaggtaac 166  Q
    |||||||| ||||||||| | ||||| |||||||||    
T  29112720 ttgaagttcctgtgttcgaccgtgatcaaaggtaac 29112755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 32 - 153
Target Start/End: Complemental strand, 30641137 - 30641018
Alignment:
Q  32 agaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctccggcgattatgacgttt 130  Q
    ||||||||||||||| || |||| |||||||||||||||||||||||   || ||||| ||||||||||| ||||||||||| | | |||| ||||||||    
T  30641137 agaaacatcaaaaacgtccttgacccttctccttcccactaaaactt--tccgttctcgcccctccaaaatcatcatcatct-ctgagattctgacgttt 30641041  T
Q  131 ttgaagtttctgtgttcggctgt 153  Q
    |||||||||| |||||| |||||    
T  30641040 ttgaagtttcagtgttctgctgt 30641018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 4641673 - 4641758
Alignment:
Q  30 tcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctcc 114  Q
    |||||||||||||||||||||||||  |||||||||||| ||||||| | | ||||| || ||||||||||| |||||||||||||    
T  4641673 tcagaaacatcaaaaacatctttgactcttctccttcccgctaaaacgttctccattgtcgcccctccaaaatcatcatcatctcc 4641758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 2968443 - 2968528
Alignment:
Q  30 tcagaaacatcaaaaacatctttgatccttctccttcccactaaaacttcccccattctcacccctccaaaa-catcatcatctcc 114  Q
    ||||||| |||||||||||| ||||  |||||||||||| ||||||| | | ||||| |||||||||||||| |||||||||||||    
T  2968443 tcagaaaaatcaaaaacatcattgactcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcatcatctcc 2968528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 30283 - 30232
Alignment:
Q  22 catttcagtcagaaacatcaaaaacatctttgatccttctccttcccactaaa 74  Q
    |||||||| ||||| |||||||||||||| ||||| ||||||||||| |||||    
T  30283 catttcagccagaa-catcaaaaacatctctgatcgttctccttcccgctaaa 30232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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