View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16640_low_2 (Length: 505)
Name: NF16640_low_2
Description: NF16640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16640_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Complemental strand, 18925375 - 18924891
Alignment:
| Q |
1 |
acacgatctcaattccgttgatgaaagcataagcctttgattgatttatggtgtttggaatgaaagttatatttaacttctcacttggtttcattttgag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
18925375 |
acacgatctcaattccgttgatgaaagcataagcctttggttgatttatggtgtttggaatgaaagttatatttaacttctcagttggtttcattttgag |
18925276 |
T |
|
| Q |
101 |
gcagtactctttcgtgattgtcttgttatcgttttgaaaccaaagtgcggggttaaagtctttgagaagggtgacattgtttccaactacgacggtgaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||| |
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| T |
18925275 |
gcagtactctttcgtgattgtcttgttatcgttttgaagccaaagtgcggggttaaagtcattgagaagggtgacattggttccaactttgacggtgaag |
18925176 |
T |
|
| Q |
201 |
agggcgttataggtttcaaagttttgatacgatgttgggtaaaaatgaaggcgaagaaaaatagggccattagcgacggaaggaaatgagaatgtgaagt |
300 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
18925175 |
agggcgtcgaaggtttcaaagttttgatacgatgttgggtaaaaatgaaggcgaagaaaaatagggctattagcgacggaaggaaatgagaatgtgaagt |
18925076 |
T |
|
| Q |
301 |
tggaaaatgaaatacgtgctgaggcaaacggaatttggttaacagaatcagagttagggttgggtttggatttgatagatgaaaattcagtctgtggttc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18925075 |
tggaaaatgaaatacgtgctgaggcaaacggaatttggttaacagaatcagagttagggttgggtttggatttgatagatgaaaattcagtctgtggttc |
18924976 |
T |
|
| Q |
401 |
aatgatagagaatagtttggagtcatcaatgtcaccaacccaggttcgattttcaaatgttgtatctatggagtggccacaattc |
485 |
Q |
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|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18924975 |
aatgatagagaatagtttggtgtcatccatgtcaccaacccaggttcgattttcaaatgttgtatctatggagtggccacaattc |
18924891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 148; Significance: 7e-78; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 1 - 484
Target Start/End: Original strand, 4667403 - 4667880
Alignment:
| Q |
1 |
acacgatctcaattccgttgatgaaagcataagcctttgattgatttatggtgtttggaatgaaagttatatttaacttctcacttggtttcattttgag |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||| ||| |||| ||| || | || ||||||||||||| | || ||||| | | |||| | | || |
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| T |
4667403 |
acacaatctcaattccgttgatgaaagcaaaagcatttaattggtttgtgtttttgggaatgaaagttacgtctagtttctccccttgtttggtatggat |
4667502 |
T |
|
| Q |
101 |
gcagtactctttcgtgattgtcttgttatcgttttgaaaccaaagtgcggggttaaagtctttgagaagggtgacattgtttccaactacgacggtgaag |
200 |
Q |
| |
|
||| || ||||| ||||||||||||||||||||| ||| |||||||| ||| ||||||||||||||||||| | ||| |||| ||| ||| |||||| |
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|
| T |
4667503 |
gcaatattctttggtgattgtcttgttatcgtttggaagccaaagtgaagggctaaagtctttgagaagggtaaggttggttcctactttgactgtgaag |
4667602 |
T |
|
| Q |
201 |
agggcgttataggtttcaaagttttgatacgatgttgggtaaaaatgaaggcgaagaaaaatagggccattagcgacggaaggaaatgagaatgtgaagt |
300 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| || || | || ||||||||||||||| | |
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|
| T |
4667603 |
agagcgttggaggtttcaaagttttgatacgatgttgggtaaaaatggaggcgaagaaaaacagggccactattgatcggagaaaatgagaatgtgaaat |
4667702 |
T |
|
| Q |
301 |
tggaaaatgaaatacgtgctgaggcaaacggaatttggttaacagaatcagagttagggttgggtttggatttgatagatgaaaattcagtctgtggttc |
400 |
Q |
| |
|
||||||||| |||||||| |||| ||| ||||| || |||||||||||||||||||| || | ||||| ||| | |||| | ||| |||||||| |
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|
| T |
4667703 |
cggaaaatgatatacgtgcagaggaaaatggaatatgattaacagaatcagagttaggattagctttggcttttacagat-atgatt-----tgtggttc |
4667796 |
T |
|
| Q |
401 |
aatgatagagaatagtttggagtcatcaatgtcaccaacccaggttcgattttcaaatgttgtatctatggagtggccacaatt |
484 |
Q |
| |
|
||||| |||||| ||||||| |||||| |||| ||||||||||||||||||||||| | ||||||||||| || |||||||| |
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|
| T |
4667797 |
aatgacagagaagagtttggtatcatcattgtccccaacccaggttcgattttcaaagatagtatctatggaatgaccacaatt |
4667880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 57 - 485
Target Start/End: Original strand, 4631451 - 4631885
Alignment:
| Q |
57 |
ggaatgaaagttatatttaacttctcacttggtttcattttgaggcagtactctttcgtgattgtcttgttatcgttttgaaaccaaagtgcggggttaa |
156 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||| |||| | ||| || ||||| |||||||||||| |||||||| || |||||| | ||| |||| |
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|
| T |
4631451 |
ggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttggtgattgtcttgctatcgtttgaaagccaaagcgagggattaa |
4631550 |
T |
|
| Q |
157 |
agtctttgagaagggtgacattgtttccaactacgacggtgaagagggcgttataggtttcaaagttttgatac------gatgttgggtaaaaatgaag |
250 |
Q |
| |
|
|||||||||||||||| | ||| |||| ||| ||| |||||||||||||| ||||||||| || ||||||| |||||||| ||||||| || |
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|
| T |
4631551 |
agtctttgagaagggtaaggttggttcctactttgactgtgaagagggcgttggaggtttcaatgtgttgatacgaatacgatgttggataaaaatagag |
4631650 |
T |
|
| Q |
251 |
gcgaagaaaaatagggccattagcgacggaaggaaatgagaatgtgaagttggaaaatgaaatacgtgctgaggcaaacggaatttggttaacagaatca |
350 |
Q |
| |
|
||||||||||||||||||||| | || ||||| ||| ||||||||||| || ||||| ||||||||||| ||||| || |||||| | ||||||| |||| |
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|
| T |
4631651 |
gcgaagaaaaatagggccattggtgatggaagaaaaggagaatgtgaaattcgaaaaagaaatacgtgcagaggcgaagggaattcgcttaacagcatca |
4631750 |
T |
|
| Q |
351 |
gagttagggttgggtttggatttgatagatgaaaattcagtctgtggttcaatgatagagaatagtttggagtcatcaatgtcaccaacccaggttcgat |
450 |
Q |
| |
|
|||||||| || | ||||| ||||| ||| | | ||| || |||||||||||||||||||||| ||||| || ||| |||| |||||||| ||||||| |
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|
| T |
4631751 |
gagttaggattagctttggctttgaaagacgggagttcggtttgtggttcaatgatagagaataatttggtgttatccctgtccccaacccatgttcgat |
4631850 |
T |
|
| Q |
451 |
tttcaaatgttgtatctatggagtggccacaattc |
485 |
Q |
| |
|
||||||| | ||||| || |||||||||||||| |
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|
| T |
4631851 |
tttcaaagatagtatcgttgaagtggccacaattc |
4631885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 215 - 298
Target Start/End: Original strand, 4663369 - 4663452
Alignment:
| Q |
215 |
ttcaaagttttgatacgatgttgggtaaaaatgaaggcgaagaaaaatagggccattagcgacggaaggaaatgagaatgtgaa |
298 |
Q |
| |
|
||||||||||| ||| ||||||| ||||||||||||||||||||||| ||||| | ||| || || |||||||||| ||||||| |
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|
| T |
4663369 |
ttcaaagtttttataagatgttgagtaaaaatgaaggcgaagaaaaacagggcaactagggatggtaggaaatgagtatgtgaa |
4663452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 4783255 - 4783202
Alignment:
| Q |
211 |
aggtttcaaagttttgatacgatgttgggtaaaaatgaaggcgaagaaaaatag |
264 |
Q |
| |
|
|||||||||| |||||||| || ||||||||||||||||||||||||||||||| |
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|
| T |
4783255 |
aggtttcaaaattttgatatgaagttgggtaaaaatgaaggcgaagaaaaatag |
4783202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 4815684 - 4815631
Alignment:
| Q |
211 |
aggtttcaaagttttgatacgatgttgggtaaaaatgaaggcgaagaaaaatag |
264 |
Q |
| |
|
|||||||||| |||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
4815684 |
aggtttcaaaattttgatatgaagttgggtaaaaatgaaggcgaagaaaaatag |
4815631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 261
Target Start/End: Original strand, 4637533 - 4637579
Alignment:
| Q |
215 |
ttcaaagttttgatacgatgttgggtaaaaatgaaggcgaagaaaaa |
261 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||| |||||||||| |
|
|
| T |
4637533 |
ttcaaagttttgataagatgtagggtaaaaatgaagacgaagaaaaa |
4637579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 261
Target Start/End: Original strand, 4864604 - 4864650
Alignment:
| Q |
215 |
ttcaaagttttgatacgatgttgggtaaaaatgaaggcgaagaaaaa |
261 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||| ||||| |
|
|
| T |
4864604 |
ttcaaagttttgataagatgttgggtaaaaatgaagacgaacaaaaa |
4864650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 4711694 - 4711607
Alignment:
| Q |
12 |
attccgttgatgaaagcataa---gcctttgattgatttatggtgtttggaatgaaagttatatttaacttctcacttggtttcattt |
96 |
Q |
| |
|
|||||||| |||||||||||| | ||||| ||||||||| ||||||||||||||||||| ||| ||||||| ||||||| |||| |
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|
| T |
4711694 |
attccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatttggtttgattt |
4711607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 4637357 - 4637417
Alignment:
| Q |
36 |
tttgattgatttatggtgtttggaatgaaagttatatttaacttctcacttggtttcattt |
96 |
Q |
| |
|
|||||||| |||||| |||| |||||||||||||| |||||||| ||| ||||||| |||| |
|
|
| T |
4637357 |
tttgattggtttatgctgttaggaatgaaagttatgtttaacttttcatttggtttgattt |
4637417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 4644374 - 4644425
Alignment:
| Q |
215 |
ttcaaagttttgatacgatgttgggtaaaaatgaaggcgaagaaaaataggg |
266 |
Q |
| |
|
|||||| ||||||||||||| |||||||||| |||||||||||||| |||| |
|
|
| T |
4644374 |
ttcaaaattttgatacgatgcagggtaaaaataaaggcgaagaaaaacaggg |
4644425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 4696594 - 4696543
Alignment:
| Q |
215 |
ttcaaagttttgatacgatgttgggtaaaaatgaaggcgaagaaaaataggg |
266 |
Q |
| |
|
|||||||||| | ||||| || ||||||||||||||||||||||||| |||| |
|
|
| T |
4696594 |
ttcaaagtttcggtacgaagtcgggtaaaaatgaaggcgaagaaaaacaggg |
4696543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 4696812 - 4696730
Alignment:
| Q |
12 |
attccgttgatgaaagcataa---gcctttgattgatttatggtgtttggaatgaaagttatatttaacttctcacttggttt |
91 |
Q |
| |
|
|||||||| |||||||||||| | ||||| || |||||| || | |||||||||||||| |||||||||||| ||||||| |
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|
| T |
4696812 |
attccgttaatgaaagcataataaggatttgactggtttatgttgctgggaatgaaagttatgtttaacttctcatttggttt |
4696730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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