View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16640_low_21 (Length: 221)

Name: NF16640_low_21
Description: NF16640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16640_low_21
NF16640_low_21
[»] chr5 (1 HSPs)
chr5 (5-89)||(35468301-35468385)
[»] chr6 (1 HSPs)
chr6 (6-89)||(27899104-27899188)
[»] chr1 (3 HSPs)
chr1 (6-89)||(11523245-11523323)
chr1 (33-89)||(41318544-41318601)
chr1 (33-89)||(47820153-47820210)
[»] chr8 (1 HSPs)
chr8 (41-89)||(18603923-18603972)
[»] chr7 (1 HSPs)
chr7 (41-89)||(42561797-42561846)


Alignment Details
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 35468385 - 35468301
Alignment:
Q  5 taaagacaaaataaacttgaccagaaagaaaaaatcaatcaaatttaaatgcaaggatatttttgtctttttaaaattaaacaca 89  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35468385 taaagacaaaataaacttgaccaaaaagaaaaaatcaatcaaatttaaatgcaaggatatttttgtctttttaaaattaaacaca 35468301  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 89
Target Start/End: Complemental strand, 27899188 - 27899104
Alignment:
Q  6 aaagacaaaataaacttgaccagaaagaaaaaa-tcaatcaaatttaaatgcaaggatatttttgtctttttaaaattaaacaca 89  Q
    |||||||||||||||||||||| |||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  27899188 aaagacaaaataaacttgaccaaaaagaaaaaaatcaatcaaaattaaatgcaaagatatttttgtctttttaaaattaaacaca 27899104  T

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Target: chr1 (Bit Score: 60; Significance: 9e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 6 - 89
Target Start/End: Complemental strand, 11523323 - 11523245
Alignment:
Q  6 aaagacaaaataaacttgaccagaaagaaaaaatcaatcaaatttaaatgcaaggatatttttgtctttttaaaattaaacaca 89  Q
    |||||||||||||||||||     || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11523323 aaagacaaaataaacttga-----aaaaaaaaatcaatcaaatttaaatgcaaggatatttttgtctttttaaaattaaacaca 11523245  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 41318601 - 41318544
Alignment:
Q  33 aaaaaatcaatcaaatttaaatgcaaggatatttttgtctttttaaaat-taaacaca 89  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  41318601 aaaaaatcaatcaattttaaatgcaaggatatttttgtctttttaaaatataaacaca 41318544  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 47820210 - 47820153
Alignment:
Q  33 aaaaaatcaatcaaatttaaatgcaaggatatttttgtctttttaaaat-taaacaca 89  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  47820210 aaaaaatcaatcaattttaaatgcaaggatatttttgtctttttaaaatctaaacaca 47820153  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 18603972 - 18603923
Alignment:
Q  41 aatcaaatttaaatgcaaggatatttttgtctttttaaaat-taaacaca 89  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  18603972 aatcaattttaaatgcaaggatatttttgtctttttaaaatctaaacaca 18603923  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 42561797 - 42561846
Alignment:
Q  41 aatcaaatttaaatgcaaggatatttttgtctttttaaaat-taaacaca 89  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  42561797 aatcaattttaaatgcaaggatatttttgtctttttaaaatctaaacaca 42561846  T

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