View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16640_low_5 (Length: 463)
Name: NF16640_low_5
Description: NF16640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16640_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 455
Target Start/End: Complemental strand, 38950499 - 38950062
Alignment:
| Q |
18 |
agttaggcagagtaatgttgttttgatgagaagcattgatggctaatggaacagtatagtagacacaacataactagagctatgcatattcattcatggc |
117 |
Q |
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| T |
38950499 |
agttaggcagagtaatgttgttttgatgagaagcattgatggctaatggaacagtatagtagacacaacataactagagctatgcatattcattcatggc |
38950400 |
T |
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| Q |
118 |
ttaaggagaatgaaagcgataactctttactctatggtctgttaggtggtcataggtgcccactttggaccctcatagcccttcccttattacacctaac |
217 |
Q |
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| T |
38950399 |
ttaaggagaatgaaagcgataactctttactctatggtctgttaggtggtcataggtgcccactttggaccctcatagcccttcccttattacacctaac |
38950300 |
T |
|
| Q |
218 |
ctacattacattagtactagtagtttctacattggcgatgtagattcaatactcgtagttcttattgtatagcaagtgtgagttaaaagttcgatgttga |
317 |
Q |
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|||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38950299 |
ctacattacattagtactagtagtttttacattggcggtgtagattcaatactcatagttcttattgtatagcaaatgtgagttaaaagttcgatgttga |
38950200 |
T |
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| Q |
318 |
gtattgagatccataaactcaatatcttaaagttatgcattaagatatgatgtccaacttaattgtatgattgtttttgatcaaatgtggttgatctctc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
38950199 |
gtattgagatccataaactcaatatcttaaagttatgcattaagatatgatgtccaactcaattgtataattgtttttgatcaaatgtggttgatctctc |
38950100 |
T |
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| Q |
418 |
agactctccacatacccccaacaatttctacctatgct |
455 |
Q |
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| |||| |||||||||||||||||||||||| |||||| |
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| T |
38950099 |
atactccccacatacccccaacaatttctacgtatgct |
38950062 |
T |
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