View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16640_low_9 (Length: 375)
Name: NF16640_low_9
Description: NF16640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16640_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 47292570 - 47292305
Alignment:
| Q |
18 |
catgcacaagcaatgtaatattcttttcctcctattgcaggaacataagcaacaataagttttcctgattttctgaaattcatgatttcccttcgaattt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
47292570 |
catgcacaagcaatgtaatattcttttcctcctattgcagggacataagcaacaataagttttcctgattttctgaaattcatgatttcctttcgaattt |
47292471 |
T |
|
| Q |
118 |
catgagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcga |
217 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47292470 |
catgagtttagcccaaccacaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcga |
47292371 |
T |
|
| Q |
218 |
ggcagagatgatacctcaccatggtgctcaggtatctggccgctcaaatcaatttgcaagacgctg |
283 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
47292370 |
ggcagagatgatacctcaccatggtgctcagatatctggccgctcaaatcaatttgcaagacgctg |
47292305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 56209633 - 56209838
Alignment:
| Q |
22 |
cacaagcaatgtaatattcttttcctcctattgcaggaacataagcaacaataagttttcctgattttctgaaattcatgatttcccttcgaatttcat- |
120 |
Q |
| |
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|||||||||||||||||||||| |||| |||| || ||||||||| |||| |||||| || |||||||||||||| | ||||| |||||||||||||| |
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| T |
56209633 |
cacaagcaatgtaatattctttaactccaattgaagtaacataagccacaacaagtttaccagattttctgaaatttaagatttgccttcgaatttcatc |
56209732 |
T |
|
| Q |
121 |
gagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggc |
220 |
Q |
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||||||||||||||| ||||||||| || |||| ||||| | || |||||||||||||||||||| || |||||||||| ||||||||||| | ||||| |
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| T |
56209733 |
gagtttagcccaaccacaatttaaagtatcaatacgaagatatacggcagaaatacgatgatcataagctgctttcaacatattatcgcaaaattgaggc |
56209832 |
T |
|
| Q |
221 |
agagat |
226 |
Q |
| |
|
|||||| |
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|
| T |
56209833 |
agagat |
56209838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 291 - 364
Target Start/End: Complemental strand, 47291991 - 47291918
Alignment:
| Q |
291 |
gtgcagtatcagtcgattagggcttggaaaggaaaagaatagtgtatgagcgttagcttagggtttcttctcac |
364 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47291991 |
gtgcagtatcagtcgattagggcttggaaaggaaaagaatagtgtatgagcgttagcttagggtttcttctcac |
47291918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 81 - 223
Target Start/End: Original strand, 45863436 - 45863579
Alignment:
| Q |
81 |
cctgattttctgaaattcatgatttcccttcgaatttcatgag-tttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgat |
179 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||| || |||||||||||| ||||||||| || ||| |||||| | || |||||||||||| |
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| T |
45863436 |
cctgattttctgaaattcaagatttgtcttcgaatttcatcagctttagcccaaccacaatttaaattatcaatttgaagatatacggcagaaatacgag |
45863535 |
T |
|
| Q |
180 |
gatcatatgcggctttcaacaaattatcgcaaattcgaggcaga |
223 |
Q |
| |
|
||||||| || ||||||||||||||||| |||||| | |||||| |
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|
| T |
45863536 |
gatcataagctgctttcaacaaattatctcaaatttggggcaga |
45863579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 81 - 214
Target Start/End: Original strand, 45883384 - 45883518
Alignment:
| Q |
81 |
cctgattttctgaaattcatgatttcccttcgaatttcat-gagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgat |
179 |
Q |
| |
|
||||||||||||||||| | ||| | ||||||||||||| ||||||||||||||||||||||||| | ||| |||||| |||| ||||||||||| |
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| T |
45883384 |
cctgattttctgaaatttaagatctgtcttcgaatttcatcgagtttagcccaaccgcaatttaaattgtcaatttgaagatacacaccagaaatacgag |
45883483 |
T |
|
| Q |
180 |
gatcatatgcggctttcaacaaattatcgcaaatt |
214 |
Q |
| |
|
||||||| || |||||||||||||||||||||||| |
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|
| T |
45883484 |
gatcataagctgctttcaacaaattatcgcaaatt |
45883518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 54303485 - 54303383
Alignment:
| Q |
18 |
catgcacaagcaatgtaatattcttttcctcctattgcaggaacataagcaacaataagttttcctgattttctgaaattcatgatttcccttcgaattt |
117 |
Q |
| |
|
||||||| ||| | |||||| |||||| |||| ||| |||| |||||||||| |||||||||||||||||||||||||| | ||||| ||||||||||| |
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|
| T |
54303485 |
catgcactagcgacgtaatactcttttactccaatttcagggacataagcaaagataagttttcctgattttctgaaatttaagatttgccttcgaattt |
54303386 |
T |
|
| Q |
118 |
cat |
120 |
Q |
| |
|
||| |
|
|
| T |
54303385 |
cat |
54303383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 358
Target Start/End: Complemental strand, 47288472 - 47288412
Alignment:
| Q |
299 |
tcagtcgattagggctt-ggaaaggaaaagaatagtgtatgagcgttagcttagggtttct |
358 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||| |||| |
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|
| T |
47288472 |
tcagtcgattagggctttggaaaggaaaagaatagtgcatgagcgtgagcttagggcttct |
47288412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 7973538 - 7973742
Alignment:
| Q |
18 |
catgcacaagcaatgtaatattcttttcctcctattgcaggaacataagcaacaataagttttcctgattttctgaaattcatgatttcccttcgaattt |
117 |
Q |
| |
|
||||||||| | ||||||||||||||||| || ||| ||| |||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||| |
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|
| T |
7973538 |
catgcacaacctatgtaatattcttttccacccattacagcgacataagcaacaataagtttacctgattttctgaaatttatgatttccctttgaattt |
7973637 |
T |
|
| Q |
118 |
cat-gagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcg |
216 |
Q |
| |
|
||| ||||||||| |||| ||| |||||| |||||||| || | |||| |||||||||||| ||||||| ||||||||||||||||| ||||||||| | |
|
|
| T |
7973638 |
catcgagtttagctcaactgcattttaaaggataaataacaacatacacagcagaaatacgaggatcataagcggctttcaacaaattctcgcaaatttg |
7973737 |
T |
|
| Q |
217 |
aggca |
221 |
Q |
| |
|
||||| |
|
|
| T |
7973738 |
aggca |
7973742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 51 - 226
Target Start/End: Complemental strand, 10520393 - 10520217
Alignment:
| Q |
51 |
attgcaggaacataagcaacaataagttttcctgattttctgaaattcatgatttcccttcgaatttcatga-gtttagcccaaccgcaatttaaacgat |
149 |
Q |
| |
|
|||| ||| |||||||| |||| | ||| || |||||||||||||| | |||| |||| |||| |||| | ||||||||||||| ||| ||||| | | |
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|
| T |
10520393 |
attgaagggacataagccacaaccattttccccgattttctgaaatttaaaatttgcctttgaatctcatcaagtttagcccaaccccaacttaaatggt |
10520294 |
T |
|
| Q |
150 |
aaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggcagagat |
226 |
Q |
| |
|
||||||||| | || || ||||||| | |||||||||| |||||||| |||||| |||||||| |||| |||||| |
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|
| T |
10520293 |
cgatatgaagataaacagcggaaatacaaggatcatatgctgctttcaagaaattaccgcaaatttgaggaagagat |
10520217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 233
Target Start/End: Original strand, 35803584 - 35803647
Alignment:
| Q |
170 |
gaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggcagagatgatacct |
233 |
Q |
| |
|
||||||||| ||||||| ||||||||||| |||| |||||||||| |||||||||| |||||| |
|
|
| T |
35803584 |
gaaatacgaggatcataagcggctttcaagaaataatcgcaaatttcaggcagagataatacct |
35803647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 225
Target Start/End: Complemental strand, 24348540 - 24348395
Alignment:
| Q |
81 |
cctgattttctgaaattcatgatttcccttcgaatttcat-gagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgat |
179 |
Q |
| |
|
||||||||| ||||||||| ||| | |||||||||||| | | |||| |||| || |||| ||||| || |||||| ||| | || ||||||| ||| |
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|
| T |
24348540 |
cctgattttttgaaattcaagatgtgccttcgaatttcttctactttaccccacccacaatctaaactatcaatatggagatagaccccagaaattcgag |
24348441 |
T |
|
| Q |
180 |
gatcatatgcggctttcaacaaattatcgcaaattcgaggcagaga |
225 |
Q |
| |
|
||||||| || |||||||| ||||| ||||| ||| |||| ||||| |
|
|
| T |
24348440 |
gatcataggctgctttcaaaaaattctcgcatatttgaggtagaga |
24348395 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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