View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16641_low_1 (Length: 499)

Name: NF16641_low_1
Description: NF16641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16641_low_1
NF16641_low_1
[»] chr8 (18 HSPs)
chr8 (10-363)||(5958820-5959173)
chr8 (17-363)||(5947752-5948083)
chr8 (17-363)||(5983362-5983684)
chr8 (13-344)||(5920176-5920504)
chr8 (378-482)||(5958729-5958833)
chr8 (383-482)||(5983271-5983370)
chr8 (378-482)||(5947661-5947765)
chr8 (10-132)||(5886181-5886306)
chr8 (11-132)||(5841862-5841986)
chr8 (11-132)||(5848572-5848696)
chr8 (399-458)||(5886324-5886386)
chr8 (15-108)||(5842339-5842429)
chr8 (15-108)||(5849049-5849139)
chr8 (17-102)||(5886646-5886728)
chr8 (300-330)||(5886436-5886466)
chr8 (399-464)||(5841579-5841644)
chr8 (399-464)||(5847733-5847798)
chr8 (399-464)||(5848289-5848354)


Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 10 - 363
Target Start/End: Complemental strand, 5959173 - 5958820
Alignment:
Q  10 catcatcaccatcaagatcacctataccattcaacctcatctccaaatcagcaaagtaattttcatcaaattgatacaaaggtagacatcaatgaccatc 109  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5959173 catcatcaccatcaagattacctataccattcaacctcatctccaaatcagcaaagtaattttcatcaaattgatacaaaggtagacatcaatgaccatt 5959074  T
Q  110 ataatgccaatttccttcacattcaaaatccgatgccacaaaatattgtacaaccaatatctaatctttctacttatgaagatacatggtcaatagacag 209  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5959073 ataatgccaatttccttcacattcaaaatccgatggcacaaaatattgtacaaccaatatctaatctttctacttatgaagatacatggtcaatagacag 5958974  T
Q  210 tgtagctcttcatcttaacccagtaaatcaagaaaatcaattttcaaaaagtgacacgaccccgcttaacaaattaatgaacccaattgaattaatgcaa 309  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5958973 tgtagctcttcatcttaacccactaaatcaagaaaatcaattttcaaaaagtgacacgaccccgcttaacaaattaatgaacccaattgaattaatgcaa 5958874  T
Q  310 caatatgatcaatatcatgatttggttgaacttgatgaaactgtacctgaatta 363  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5958873 caatatgatcaatatcatgatttggttgaacttgatgaaactgtgcctgaatta 5958820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 363
Target Start/End: Complemental strand, 5948083 - 5947752
Alignment:
Q  17 accatcaagatcacctataccattcaacctcatctccaaatcagcaaagtaattttcatcaaattgatacaaaggtagacatcaatgaccatcataatgc 116  Q
    ||||||||||| ||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5948083 accatcaagattacctataccattcaacctcatctccaaatctacaaggtaattttcatcaaattgatacaaaggtagacatcaatgaccattataatgc 5947984  T
Q  117 caatttccttcacattcaaaatccgatgccacaaaatattgtacaaccaatatctaatctttctacttatgaagatacatggtcaatagacagtgtagct 216  Q
    |||||||| || |||||||||||| || ||||||||||| ||||||||||||||| ||| || | | ||||||||               | |||||||     
T  5947983 caatttccctctcattcaaaatccaataccacaaaatatagtacaaccaatatctgatccttttccatatgaaga---------------cggtgtagcc 5947899  T
Q  217 cttcatcttaacccagtaaatcaagaaaatcaattttcaaaaagtgacacgaccccgcttaacaaattaatgaacccaattgaattaatgcaacaatatg 316  Q
    |||||||| |||||||| ||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  5947898 cttcatctcaacccagttaatcaagaaaatcaatttttaaaaagtgatacgaccccacttaacaaattaatgaacccaattgaattaattcaacaatatg 5947799  T
Q  317 atcaatatcatgatttggttgaacttgatgaaactgtacctgaatta 363  Q
    ||||||||||||||||||||||||||||||  ||||| |||||||||    
T  5947798 atcaatatcatgatttggttgaacttgatgctactgtgcctgaatta 5947752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 17 - 363
Target Start/End: Complemental strand, 5983684 - 5983362
Alignment:
Q  17 accatcaagatcacctataccattcaacctcatctccaaatcagcaaagtaattttcatcaaattgatacaaaggtagacatcaatgaccatcataatgc 116  Q
    ||||||||||| ||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5983684 accatcaagattacctataccattcaacctcatctccaaatctacaaggtaattttcatcaaattgatacaaaggtagacatcaatgaccattataatgc 5983585  T
Q  117 caatttccttcacattcaaaatccgatgccacaaaatattgtacaaccaatatctaatctttctacttatgaagatacatggtcaatagacagtgtagct 216  Q
    |||||||| ||||||||||||||| || ||||||||||| ||||||||||||||| ||| || | | |||||               |||| |||||||     
T  5983584 caatttccctcacattcaaaatccaataccacaaaatatagtacaaccaatatctgatccttttccatatga---------------agacggtgtagcc 5983500  T
Q  217 cttcatcttaacccagtaaatcaagaaaatcaattttcaaaaagtgacacgaccccgcttaacaaattaatgaacccaattgaattaatgcaacaatatg 316  Q
    |||||||| ||||||||          ||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5983499 cttcatctcaacccagt---------taatcaatattcaaaaagtgatacgaccccacttaacaaattaatgaacccaattgaattaatgcaacaatatg 5983409  T
Q  317 atcaatatcatgatttggttgaacttgatgaaactgtacctgaatta 363  Q
    ||||||||||||||||||||||||||||||  ||| | |||||||||    
T  5983408 atcaatatcatgatttggttgaacttgatgctactatgcctgaatta 5983362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 13 - 344
Target Start/End: Complemental strand, 5920504 - 5920176
Alignment:
Q  13 catcaccatcaagatcacctataccattcaacctcatctccaaatcagcaaagtaattttcatcaaattgatacaaaggtagac---atcaatgaccatc 109  Q
    ||||||||| ||||||| |||| | || ||||||||||||||||||  ||| |||||||||| |||||||||||||||||||||   |||||| |||||     
T  5920504 catcaccatgaagatcaactatgctatccaacctcatctccaaatctacaaggtaattttcaccaaattgatacaaaggtagacatgatcaataaccatt 5920405  T
Q  110 ataatgccaatttccttcacattcaaaatccgatgccacaaaatattgtacaaccaatatctaatctttctacttatgaagatacatggtcaatagacag 209  Q
    |||||| |||||||||||||||||||||||| || ||| ||   ||  |||||||||| ||||||| |||  |||||||||||||||||||| | |   |    
T  5920404 ataatggcaatttccttcacattcaaaatccaataccagaa---atcttacaaccaatgtctaatccttccccttatgaagatacatggtcattgggttg 5920308  T
Q  210 tgtagctcttcatcttaacccagtaaatcaagaaaatcaattttcaaaaagtgacacgaccccgcttaacaaattaatgaacccaattgaattaatgcaa 309  Q
    | || |||||||||| || |    |||||||||||||||| | ||||||||||| || ||||| || |||||| |||| |||||||||||||||||| ||    
T  5920307 tttacctcttcatctcaatc---aaaatcaagaaaatcaaatctcaaaaagtgataccaccccactcaacaaaataatcaacccaattgaattaatggaa 5920211  T
Q  310 caatatgatcaatatcatgatttggttgaacttga 344  Q
    ||||||| ||||| |||||||||||||||||||||    
T  5920210 caatatgttcaatgtcatgatttggttgaacttga 5920176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 378 - 482
Target Start/End: Complemental strand, 5958833 - 5958729
Alignment:
Q  378 ctgtacctgaattattaaatcatcaaagccttgaggattatgcttgtagcatcctatattcatctaattcccaagaacatgaagctcctgcgaaaattca 477  Q
    |||| |||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5958833 ctgtgcctgaattagaaaatcatcaaagccttgaggattatgcttgtagcatcctagattcatctaattcccaagaacatgaagctcctgcgaaaattca 5958734  T
Q  478 gtgct 482  Q
    |||||    
T  5958733 gtgct 5958729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 383 - 482
Target Start/End: Complemental strand, 5983370 - 5983271
Alignment:
Q  383 cctgaattattaaatcatcaaagccttgaggattatgcttgtagcatcctatattcatctaattcccaagaacatgaagctcctgcgaaaattcagtgct 482  Q
    ||||||||| | ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  5983370 cctgaattagtcaatcatcaaagccttgaggattatgcttgtaacatcctagattcatctaattcgcaagaacatgaagctccagcgaaaattcagtgct 5983271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 378 - 482
Target Start/End: Complemental strand, 5947765 - 5947661
Alignment:
Q  378 ctgtacctgaattattaaatcatcaaagccttgaggattatgcttgtagcatcctatattcatctaattcccaagaacatgaagctcctgcgaaaattca 477  Q
    |||| |||||||||   ||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||| |||||  | |||||||    
T  5947765 ctgtgcctgaattagccaatcatcaaagccttgaggattacgcttctagcatcctagattcatctaattcccaagaacatgaaactcctcaggaaattca 5947666  T
Q  478 gtgct 482  Q
    |||||    
T  5947665 gtgct 5947661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 10 - 132
Target Start/End: Complemental strand, 5886306 - 5886181
Alignment:
Q  10 catcatcaccatcaagatcacctataccattcaacctcatctccaaatcagcaaagtaattttcatcaaattgatacaaaggtagac---atcaatgacc 106  Q
    |||||||| |||||||||||  | |||| | |||||||||||| |||||  ||| | |||||| | |||||||||||||||||||||   |||||| |||    
T  5886306 catcatcatcatcaagatcagttttaccttccaacctcatctctaaatctacaaggaaatttttaccaaattgatacaaaggtagacatgatcaataacc 5886207  T
Q  107 atcataatgccaatttccttcacatt 132  Q
    || ||||| ||||||||||| |||||    
T  5886206 attataatcccaatttccttgacatt 5886181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 5841986 - 5841862
Alignment:
Q  11 atcatcaccatcaagatcacctataccattcaacctcatctccaaatcagcaaagtaattttcatcaaattgatacaaaggtagac---atcaatgacca 107  Q
    ||||||| |||||||||||  | |||| | ||||||||||||||||||  ||| | |||||| | |||||||||||||| ||||||   |||||| ||||    
T  5841986 atcatcatcatcaagatcagttctaccttccaacctcatctccaaatctacaaggaaatttttaccaaattgatacaaatgtagacatgatcaataacca 5841887  T
Q  108 tcataatgccaatttccttcacatt 132  Q
    | ||||| ||||||||||| |||||    
T  5841886 ttataatcccaatttccttgacatt 5841862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 5848696 - 5848572
Alignment:
Q  11 atcatcaccatcaagatcacctataccattcaacctcatctccaaatcagcaaagtaattttcatcaaattgatacaaaggtagac---atcaatgacca 107  Q
    ||||||| |||||||||||  | |||| | ||||||||||||||||||  ||| | |||||| | |||||||||||||| ||||||   |||||| ||||    
T  5848696 atcatcatcatcaagatcagttctaccttccaacctcatctccaaatctacaaggaaatttttaccaaattgatacaaatgtagacatgatcaataacca 5848597  T
Q  108 tcataatgccaatttccttcacatt 132  Q
    | ||||| ||||||||||| |||||    
T  5848596 ttataatcccaatttccttgacatt 5848572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 458
Target Start/End: Complemental strand, 5886386 - 5886324
Alignment:
Q  399 atcaaagccttgaggattatgcttgtagcatccta---tattcatctaattcccaagaacatg 458  Q
    |||||||||||||||||||||||||||||||||||   ||||||||| ||||| | |||||||    
T  5886386 atcaaagccttgaggattatgcttgtagcatcctagattattcatctgattccaaggaacatg 5886324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 5842429 - 5842339
Alignment:
Q  15 tcaccatcaagatcacctataccattcaacctcatctccaaatcagcaaagtaattttcatcaaattgatacaaaggtagacatcaatgaccat 108  Q
    ||||||||||||||||||||||| ||||| ||| |||||||||  |||| |   |||||| |||| || ||||| ||||||||||||| |||||    
T  5842429 tcaccatcaagatcacctatacctttcaaactcgtctccaaatatgcaatg---ttttcaccaaactggtacaatggtagacatcaataaccat 5842339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 5849139 - 5849049
Alignment:
Q  15 tcaccatcaagatcacctataccattcaacctcatctccaaatcagcaaagtaattttcatcaaattgatacaaaggtagacatcaatgaccat 108  Q
    ||||||||||||||||||||||| ||||| ||| |||||||||  |||| |   |||||| |||| || ||||| ||||||||||||| |||||    
T  5849139 tcaccatcaagatcacctatacctttcaaactcgtctccaaatatgcaatg---ttttcaccaaactggtacaatggtagacatcaataaccat 5849049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 5886728 - 5886646
Alignment:
Q  17 accatcaagatcacctataccattcaacctcatctccaaatcagcaaagtaattttcatcaaattgatacaaaggtagacatcaat 102  Q
    |||||||||||| |||||||| |||||  |||| |||||||| |||| |   |||||| |||  ||||||||||||||||||||||    
T  5886728 accatcaagatctcctatacctttcaaattcatttccaaatctgcaatg---ttttcaacaacctgatacaaaggtagacatcaat 5886646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 330
Target Start/End: Complemental strand, 5886466 - 5886436
Alignment:
Q  300 attaatgcaacaatatgatcaatatcatgat 330  Q
    |||||||||||||||||||||||||||||||    
T  5886466 attaatgcaacaatatgatcaatatcatgat 5886436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 464
Target Start/End: Complemental strand, 5841644 - 5841579
Alignment:
Q  399 atcaaagccttgaggattatgcttgtagcatcctatattcatctaattcccaagaacatgaagctc 464  Q
    ||||||||||||||||  ||| |||| |||||||| |||||| | ||||| | |||||||||||||    
T  5841644 atcaaagccttgaggaccatgattgttgcatcctagattcatttgattccaaggaacatgaagctc 5841579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 464
Target Start/End: Complemental strand, 5847798 - 5847733
Alignment:
Q  399 atcaaagccttgaggattatgcttgtagcatcctatattcatctaattcccaagaacatgaagctc 464  Q
    ||||||||||||||||  ||| |||| |||||||| |||||| | ||||| | |||||||||||||    
T  5847798 atcaaagccttgaggaccatgattgttgcatcctagattcatttgattccaaggaacatgaagctc 5847733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 464
Target Start/End: Complemental strand, 5848354 - 5848289
Alignment:
Q  399 atcaaagccttgaggattatgcttgtagcatcctatattcatctaattcccaagaacatgaagctc 464  Q
    ||||||||||||||||  ||| |||| |||||||| |||||| | ||||| | |||||||||||||    
T  5848354 atcaaagccttgaggaccatgattgttgcatcctagattcatttgattccaaggaacatgaagctc 5848289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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