View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16641_low_12 (Length: 254)
Name: NF16641_low_12
Description: NF16641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16641_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 51521667 - 51521904
Alignment:
| Q |
1 |
tttgatatgcaattttcacatcttaaacattcattatttttatttgatgtcaaatcttgaacatcactattgtgnnnnnnnntataattttgcaatttac |
100 |
Q |
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| T |
51521667 |
tttgatatgcaattttcacatcttaaacattcattatttt-atttgatgtcacatcttgaacatcactattgtgaaaaaatatataattttgcaatttac |
51521765 |
T |
|
| Q |
101 |
ctccattaaacttttcctctcccccgtcaaacccaacacataaaaaattaaattcctgatcgttcgttctctctattaagattcctccctccccttcgtt |
200 |
Q |
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|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
51521766 |
ctccattaaatttttcctctccctcgtcaaacccaacacataaaaaattaaattcctcatcgtttgttctctctattaagattcctccctccccttcgtt |
51521865 |
T |
|
| Q |
201 |
aaaccaaacaaaaagaagttgatatcactaagatgatag |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
51521866 |
aaaccaaacaaaaagaagttgatatcactaagatgatag |
51521904 |
T |
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