View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16641_low_14 (Length: 228)
Name: NF16641_low_14
Description: NF16641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16641_low_14 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 51521333 - 51521551
Alignment:
| Q |
11 |
gacaatacgacgaaaatgataacaatgagcaaatacaatcacctgaagaatcttttagagttagtcctattttggtggttgttaatatgataataacttc |
110 |
Q |
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|||||||||| || ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51521333 |
gacaatacgatgagaatgataacaatgagcaaatacaatcatcggaagaatcttttagagttagtcctattttggtggttgttaatatgataataacttc |
51521432 |
T |
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| Q |
111 |
attgaaaaatagatttgagccgttagaagtatttgaaagtattgttagttttttatttgaaagta-nnnnnnnnnctatattaaaagtattgcaaatatt |
209 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
51521433 |
attgaaaaatagatttgagccattagaagtatttgaaagtattgttggttttttatttgaaagtattttttttttctatattgaaagtattgcaaatatt |
51521532 |
T |
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| Q |
210 |
ttttgtcaaacatgttgat |
228 |
Q |
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|||||||||| ||||||| |
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| T |
51521533 |
ttttgtcaaatgtgttgat |
51521551 |
T |
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Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 11 - 170
Target Start/End: Complemental strand, 9596625 - 9596466
Alignment:
| Q |
11 |
gacaatacgacgaaaatgataacaatgagcaaatacaatcacctgaagaatcttttagagttagtcctattttggtggttgttaatatgataataacttc |
110 |
Q |
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||||||| || || |||||||| ||||||||||||||||||| |||||| ||||||||||||| | |||||||||||||||| |||||||||||||||| |
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| T |
9596625 |
gacaatatgatgagaatgataatgatgagcaaatacaatcacccgaagaaccttttagagttagacatattttggtggttgttgatatgataataacttc |
9596526 |
T |
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| Q |
111 |
attgaaaaatagatttgagccgttagaagtatttgaaagtattgttagttttttatttga |
170 |
Q |
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| T |
9596525 |
attcaaaaatatatttgagcatttagaagtatttgaaagtattgttggttttttatttga |
9596466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 156
Target Start/End: Complemental strand, 11872502 - 11872432
Alignment:
| Q |
86 |
tggttgttaatatgataataacttcattgaaaaatagatttgagccgttagaagtatttgaaagtattgtt |
156 |
Q |
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|||||||| |||||| |||| || |||||||| ||| ||||||| ||| ||||||||| ||||||||||| |
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| T |
11872502 |
tggttgttgatatgacaatagttttattgaaaattagttttgagcagtttgaagtatttaaaagtattgtt |
11872432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 170
Target Start/End: Original strand, 33381867 - 33382012
Alignment:
| Q |
25 |
aatgataacaatgagcaaatacaatcacctgaagaatcttttagagttagtcctattttggtggttgttaatatgataataacttcattgaaaaatagat |
124 |
Q |
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| T |
33381867 |
aatgataatgatgagcaaatagaaccactcgataaatcttttagattcagacatattttaatggttgttgatatgataataacttcaatgaaaaataaaa |
33381966 |
T |
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| Q |
125 |
ttgagccgttagaagtatttgaaagtattgttagttttttatttga |
170 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
33381967 |
ttgagcagttagaagtatttgaaagtattgttggttttttatttga |
33382012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 58 - 170
Target Start/End: Original strand, 33456483 - 33456595
Alignment:
| Q |
58 |
gaatcttttagagttagtcctattttggtggttgttaatatgataataacttcattgaaaaatagatttgagccgttagaagtatttgaaagtattgtta |
157 |
Q |
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|||||| ||||||| |||| ||||||||||| |||| |||| || |||| || ||| |||||||||||||||| ||||||||||||||||||||||| || |
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| T |
33456483 |
gaatctcttagagtcagtcatattttggtggatgttgatataattataagtttattaaaaaatagatttgagcagttagaagtatttgaaagtattgcta |
33456582 |
T |
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| Q |
158 |
gttttttatttga |
170 |
Q |
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|||||||||||| |
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| T |
33456583 |
attttttatttga |
33456595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 44625440 - 44625300
Alignment:
| Q |
11 |
gacaatacgacgaaaatgataacaatgagcaaatacaatcacctgaagaatcttttagagttagtcctattttggtggttgttaatatgataataacttc |
110 |
Q |
| |
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||||||| || || |||||||| |||||||||||||| |||| || ||||||||||||| | || |||||| ||||||||| |||||||||||||||| |
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| T |
44625440 |
gacaatatgaagagaatgataatgatgagcaaatacaaccacccgagaaatcttttagagtcattcatattttagtggttgttgatatgataataacttc |
44625341 |
T |
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| Q |
111 |
attga-aaaatagatttgagccgttagaagtatttgaaagt |
150 |
Q |
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||||| |||||||||||||| |||| || ||||||||||| |
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| T |
44625340 |
attgaaaaaatagatttgagtagttaaaaatatttgaaagt |
44625300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 170
Target Start/End: Complemental strand, 42908903 - 42908745
Alignment:
| Q |
11 |
gacaatacgacgaaaatgataacaatgagcaaatacaatcacctgaagaatcttttagagttagtcctattttggtggttgttaatatgataataacttc |
110 |
Q |
| |
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|||||||||| || |||||||| |||| |||| ||||||| || ||||||||||||| | | ||||| |||||||| | |||||||||||||||| |
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| T |
42908903 |
gacaatacgatgagaatgataatgatgaacaaacacaatcattcgagtaatcttttagagtcaaacatattt-ggtggttgatgatatgataataacttc |
42908805 |
T |
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| Q |
111 |
attgaaaaatagatttgagccgttagaagtatttgaaagtattgttagttttttatttga |
170 |
Q |
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|||||||||| ||||||| ||||||||||||| |||||||| || ||||||||||||| |
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| T |
42908804 |
attgaaaaatgtatttgagtggttagaagtattttaaagtatttttggttttttatttga |
42908745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 170
Target Start/End: Original strand, 41766848 - 41766986
Alignment:
| Q |
34 |
aatgagcaaatacaatcacct--gaagaatcttttagagttagtcctattttggtggttgttaatatgataataacttcattgaaaaatagatttgagcc |
131 |
Q |
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||||| |||||||||||| || || |||| ||||||| | ||| | |||| ||||||||| ||||| ||||||||||| |||| ||||||||| |
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| T |
41766848 |
aatgaacaaatacaatcatctctgatgaatattttagaatccgtcgtttttttgtggttgttgatatggcgataacttcattaaaaattagatttgaatg |
41766947 |
T |
|
| Q |
132 |
gttagaagtatttgaaagtattgttagttttttatttga |
170 |
Q |
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||||||||||||| || |||||||| ||||||||||| |
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| T |
41766948 |
gttagaagtattttaatgtattgttgaatttttatttga |
41766986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 156
Target Start/End: Original strand, 27923436 - 27923567
Alignment:
| Q |
25 |
aatgataacaatgagcaaatacaatcacctgaagaatcttttagagttagtcctattttggtggttgttaatatgataataacttcattgaaaaatagat |
124 |
Q |
| |
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|||||||| |||| ||||||||||| || || | | ||||||||| | || | |||||||||||||| |||||| ||||| ||||||||||||||||| |
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| T |
27923436 |
aatgataatgatgaacaaatacaatctcccgagaatttttttagagtcaatctttttttggtggttgttgatatgacaataatttcattgaaaaatagat |
27923535 |
T |
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| Q |
125 |
ttgagccgttagaagtatttgaaagtattgtt |
156 |
Q |
| |
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|| || |||||||||||||||||||||||| |
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| T |
27923536 |
ttaagtaattagaagtatttgaaagtattgtt |
27923567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 7713481 - 7713526
Alignment:
| Q |
80 |
ttttggtggttgttaatatgataataacttcattgaaaaatagatt |
125 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
7713481 |
ttttggtggttgttgatatgataataacttcaatgaaaaatagatt |
7713526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 10003374 - 10003436
Alignment:
| Q |
11 |
gacaatacgacgaaaatgataacaatgagcaaatacaatcacctgaagaatcttttagagtta |
73 |
Q |
| |
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|||||||||| | |||||||| ||||| ||||||||||||| ||| ||||||||||||||| |
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| T |
10003374 |
gacaatacgataagaatgataatgatgaggaaatacaatcacccgaaaaatcttttagagtta |
10003436 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 170
Target Start/End: Complemental strand, 26215 - 26070
Alignment:
| Q |
25 |
aatgataacaatgagcaaatacaatcacctgaagaatcttttagagttagtcctattttggtggttgttaatatgataataacttcattgaaaaatagat |
124 |
Q |
| |
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|||||||| ||||| |||||||||| || |||||||| ||||||| | | | |||| |||||||| |||||| | ||||||| || ||||||| || |
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| T |
26215 |
aatgataatgatgaggaaatacaatcgccacaagaatctattagagtcaattattttttagtggttgtggatatgacagtaacttcgttaaaaaataaat |
26116 |
T |
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| Q |
125 |
ttgagccgttagaagtatttgaaagtattgttagttttttatttga |
170 |
Q |
| |
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| || | ||||||| ||||||| |||||| || | ||||||||||| |
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| T |
26115 |
tagaacagttagaattatttgatagtatttttggatttttatttga |
26070 |
T |
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