View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16641_low_2 (Length: 454)
Name: NF16641_low_2
Description: NF16641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16641_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 7 - 440
Target Start/End: Original strand, 14303788 - 14304222
Alignment:
| Q |
7 |
gaagacttaacgtagaacacgtttacataattttgacaaagaaacataaaaacaaccatgcgtgctaataatcctcacaaaaacgccaatattcttcttc |
106 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14303788 |
gaagacttaacgtagaacacgtttacattattttgacaaagaaacataaaaacaaccatgcgtgctaataatcctcacaaaaacgccaatattcttcttc |
14303887 |
T |
|
| Q |
107 |
cgattcccaactcgaatcccacctgactcactcattttcaactcactcaactcgtcccttcc-ttaaccatgtcttcttcaccagaagcaaaacgcttag |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14303888 |
cgattcccaactcgaatcccacctgactcactcattttcaactcactcaactcgtcccttcccttaaccatgtcttcttcaccagaagcaaaacgcttag |
14303987 |
T |
|
| Q |
206 |
aagaagaactttcctatccaattctcgtcgccgaacgaattcgctccgccacagaagaaaccgattccttcaaactcgaatgctccgaagtctggaaaca |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14303988 |
aagaagaactttcctatccaattctcgtcgccgaacgaattcgctccgccacagaagaaaccgattccttcaaactcgaatgctccgaagtctggaaaca |
14304087 |
T |
|
| Q |
306 |
cgtcgaacgcctccttcaaatgctccgtacactcgtccgattcgccgccaccgctcctccgccgctttacgaacgtcccgtccgccgtgtcgccgctgaa |
405 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14304088 |
cgtcgaacgtctccttcaaatgctccgtacactcgtccgattcgccgccaccgctcctccgccgctttacgaacgtcccgtccgccgtgtcgccgctgaa |
14304187 |
T |
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| Q |
406 |
gccgccaagaatcttgatcgcgctttaactttaat |
440 |
Q |
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||||||||||||||||| ||||||||||||||||| |
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| T |
14304188 |
gccgccaagaatcttgaacgcgctttaactttaat |
14304222 |
T |
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