View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16641_low_3 (Length: 419)

Name: NF16641_low_3
Description: NF16641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16641_low_3
NF16641_low_3
[»] chr2 (8 HSPs)
chr2 (1-404)||(15533384-15533787)
chr2 (46-404)||(15516898-15517274)
chr2 (210-404)||(15624372-15624563)
chr2 (290-404)||(15645074-15645188)
chr2 (212-404)||(15654050-15654240)
chr2 (262-402)||(15493308-15493446)
chr2 (205-402)||(15591573-15591768)
chr2 (181-258)||(43987348-43987425)
[»] chr1 (2 HSPs)
chr1 (175-249)||(36744488-36744562)
chr1 (176-255)||(35816909-35816988)
[»] chr3 (1 HSPs)
chr3 (195-257)||(26607092-26607154)
[»] chr5 (1 HSPs)
chr5 (183-243)||(3586834-3586894)


Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 15533384 - 15533787
Alignment:
Q  1 aggagataaaagttaaatatacattcaaaccatgaacataaggaaaagctacattattctataatgttatctaacatcaacacttttagaaacacttcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15533384 aggagataaaagttaaatatacattcaaaccatgaacataaggaagagctacattattctataatgttatctaacatcaacacttttagaaacacttcaa 15533483  T
Q  101 ataatacattaccactttaattttagaaaaaacaattaataagattctgctgaccatacatgaaagattgagtgattataatttgtaagtgttgcatgct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15533484 ataatacattaccactttaattttagaaaaaacaattaataagattctgctgaccatacatgaaagattgagtgattataatttgtaagtgttgcatgct 15533583  T
Q  201 gccacataagattcttgtgtttcttgtcaaacttctctcataacaataaccattttccttgcaataatattcctctactcctctatcacacataaatcat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15533584 gccacataagattcttgtgtttcttgtcaaacttctctcataacaataaccattttccttgcaataatattcctctactcctctatcacacataaatcat 15533683  T
Q  301 atttttaccaggtttaaacagagtcctccaatagtaggttgagtaaatgatatctgaaaacaatgaaaattgcaaacctatgtacaaaagtattgggagg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15533684 atttttaccaggtttaaacagagtcctccaatagtaggttgagtaaatgatatctgaaaacaatgaaaattgcaaacctatgtacaaaagtattgggagg 15533783  T
Q  401 aaag 404  Q
    ||||    
T  15533784 aaag 15533787  T

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Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 46 - 404
Target Start/End: Original strand, 15516898 - 15517274
Alignment:
Q  46 aagctacattattctataatgttatctaacatcaacacttttagaaacacttcaaataatacattaccactttaattttagaaaaaacaattaataa--- 142  Q
    |||||||||||||| ||||||| ||  ||| ||||||||| |||||||| |||||||||||||||||||||||||||| | |||||||||||||| |       
T  15516898 aagctacattattccataatgtaataaaacgtcaacacttctagaaacaattcaaataatacattaccactttaatttaacaaaaaacaattaatgatag 15516997  T
Q  143 ----------------gattctgctgaccatacatgaaagattgagtgat-tataatttgtaagtgttgcatgctgccacataagattcttgtgtttctt 225  Q
                    ||||||||||| ||||||||  |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15516998 gatatttgactaatcagattctgctgatcatacatgggagattgagtgatatatgatttgtaagtgttgcatgctgccacataagattcttgtgtttctt 15517097  T
Q  226 gtcaaacttctctcataacaataaccattttccttgcaataatattcctctactcctctatcacacataaatcatatttttaccaggtttaaacagagtc 325  Q
    |||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||||| ||| | |||||     
T  15517098 gtcaaatttctctcataacaataagcattttccttacaataatattcctctactcctctat--cacatagatcatatttttaccaggcttagatagagtt 15517195  T
Q  326 ctccaatagtaggttgagtaaatgatatctgaaaacaatgaaaattgcaaacctatgtacaaaagtattgggaggaaag 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  15517196 ctccaatagtaggttgagtaaatgatatctgaaaacaatgaaaattgcaaacctatgtacaaaagtattggaaggaaag 15517274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 210 - 404
Target Start/End: Original strand, 15624372 - 15624563
Alignment:
Q  210 gattcttgtgtttcttgtcaaacttctctcataacaataaccattttccttgcaataatattcctctactcctctatcacacataaatcatatttttacc 309  Q
    |||||||| |||| |  ||||||||||||||||||||||| |||||||||| ||| |||| ||| ||||| |||||  |||  |||||||||||||||||    
T  15624372 gattcttgcgtttatcatcaaacttctctcataacaataaacattttcctt-caacaataatccactacttctctagtaca--taaatcatatttttacc 15624468  T
Q  310 aggtttaaacagagtcctccaatagtaggttgagtaaatgatatctgaaaacaatgaaaattgcaaacctatgtacaaaagtattgggaggaaag 404  Q
    | | ||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  15624469 atggttagacagagtcctccaatagtaggttgagttaatgatatctgaaaacaacgaaaattgcaaacctatgtacaaaggtattgggaggaaag 15624563  T

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Target: chr2; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 290 - 404
Target Start/End: Original strand, 15645074 - 15645188
Alignment:
Q  290 acataaatcatatttttaccaggtttaaacagagtcctccaatagtaggttgagtaaatgatatctgaaaacaatgaaaattgcaaacctatgtacaaaa 389  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  15645074 acataaatcatatttttaccaggcttagacagagtcctccaatagtagattgagttaatgatatctgaaaacagtgaaaattgcaaacctatgtacaaaa 15645173  T
Q  390 gtattgggaggaaag 404  Q
    |||||||||||||||    
T  15645174 gtattgggaggaaag 15645188  T

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Target: chr2; HSP #5
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 212 - 404
Target Start/End: Original strand, 15654050 - 15654240
Alignment:
Q  212 ttcttgtgtttcttgtcaaacttctctcataacaataaccattttccttgcaataatattcctctactcctctatcacacataaatcatatttttaccag 311  Q
    |||||| |||| || |||||||||| | |||||||||  |||||| ||| |||||||| ||| ||||| |||||  |||  |||||||||||||||||||    
T  15654050 ttcttgagtttattatcaaacttctgttataacaatacacatttttcttacaataataatccactacttctctagtaca--taaatcatatttttaccag 15654147  T
Q  312 gtttaaacagagtcctccaatagtaggttgagtaaatgatatctgaaaacaatgaaaattgcaaacctatgtacaaaagtattgggaggaaag 404  Q
    | ||| | ||||| ||||| ||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  15654148 gcttagatagagtactccagtagtatgttgagtaaatgatatctgaaaacaacgaaaattgcaaacatatgtacaaaagtattgggaggaaag 15654240  T

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Target: chr2; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 262 - 402
Target Start/End: Original strand, 15493308 - 15493446
Alignment:
Q  262 caataatattcctctactcctctatcacacataaatcatatttttaccaggtttaaacagagtcctccaatagtaggttgagtaaatgatatctgaaaac 361  Q
    |||||||| ||||||||| |||||  |||  |||||||||||||||||| | ||| | |||||| |||||||||||||||||||||||||||| ||||||    
T  15493308 caataataatcctctacttctctagtaca--taaatcatatttttaccaagcttagatagagtcttccaatagtaggttgagtaaatgatatcagaaaac 15493405  T
Q  362 aatgaaaattgcaaacctatgtacaaaagtattgggaggaa 402  Q
    |||  ||||||||||| ||| ||||||||||||||||||||    
T  15493406 aatttaaattgcaaacgtatatacaaaagtattgggaggaa 15493446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 205 - 402
Target Start/End: Original strand, 15591573 - 15591768
Alignment:
Q  205 cataagattcttgtgtttcttgtcaaacttctct-cataacaataaccattttccttgcaataatattcctctactcctctatcacacataaatcatatt 303  Q
    |||| |||||||| |||| || |||||||||||| | ||||||||| |||||||||| |  ||| | ||| |||||  ||||  |||  ||||| | |||    
T  15591573 cataggattcttgcgtttattatcaaacttctcttcgtaacaataaacattttccttacggtaacaatccactacttttctagtaca--taaataa-att 15591669  T
Q  304 tttaccaggtttaaacagagtcctccaatagtaggttgagtaaatgatatctgaaaacaatgaaaattgcaaacctatgtacaaaagtattgggaggaa 402  Q
    ||||| ||| ||| | |||||||||||||||||| ||||||||||||||||||| ||||| || |||||||||| |||||| |||||||||||||||||    
T  15591670 tttacgaggcttagatagagtcctccaatagtagattgagtaaatgatatctgacaacaaggagaattgcaaacttatgtagaaaagtattgggaggaa 15591768  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 258
Target Start/End: Complemental strand, 43987425 - 43987348
Alignment:
Q  181 atttgtaagtgttgcatgctgccacataagattcttgtgtttcttgtcaaacttctctcataacaataaccattttcc 258  Q
    ||||||||||||| ||||  | |||||| |||||||  ||||||||||| | ||||||  ||||||||| ||||||||    
T  43987425 atttgtaagtgttacatgaagtcacataggattcttaagtttcttgtcagatttctctagtaacaataagcattttcc 43987348  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 175 - 249
Target Start/End: Original strand, 36744488 - 36744562
Alignment:
Q  175 attataatttgtaagtgttgcatgctgccacataagattcttgtgtttcttgtcaaacttctctcataacaataa 249  Q
    ||||| ||||||||||||| ||||||||||||   |||||||  ||||||||||||||||||||| |||||||||    
T  36744488 attattatttgtaagtgttacatgctgccacaatggattcttaagtttcttgtcaaacttctctcgtaacaataa 36744562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 255
Target Start/End: Original strand, 35816909 - 35816988
Alignment:
Q  176 ttataatttgtaagtgttgcatgctgccacataagattcttgtgtttcttgtcaaacttctctcataacaataaccattt 255  Q
    |||| ||||||||||||| ||||||||||||||  ||||||| ||||||||||||||  | |||| |||||||| |||||    
T  35816909 ttattatttgtaagtgttacatgctgccacatagaattcttgcgtttcttgtcaaacacccctcacaacaataagcattt 35816988  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 26607154 - 26607092
Alignment:
Q  195 catgctgccacataagattcttgtgtttcttgtcaa-acttctctcataacaataaccattttc 257  Q
    |||||| ||||||| |||| |||||||||||||||| |||| |||||||||||||| |||||||    
T  26607154 catgcttccacataggatttttgtgtttcttgtcaatactt-tctcataacaataaacattttc 26607092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 3586834 - 3586894
Alignment:
Q  183 ttgtaagtgttgcatgctgccacataagattcttgtgtttcttgtcaaacttctctcataa 243  Q
    ||||||||||| |||||||||  | | ||||||||  |||||||| |||||||||||||||    
T  3586834 ttgtaagtgttacatgctgccgtacaggattcttgcatttcttgtgaaacttctctcataa 3586894  T

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