View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16641_low_4 (Length: 393)
Name: NF16641_low_4
Description: NF16641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16641_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 359
Target Start/End: Complemental strand, 16964351 - 16964008
Alignment:
| Q |
16 |
agttgttccctaacaacggtccaaagtatacagttatagatcagtcctttaaaatctgttgcttatggacccaaaaaatcatatttgtcgtttctttaaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16964351 |
agttgttccctaacaacggtccaaagtatacagttatagatcagtcctttaaaatctgttgcttatggacccaaaaaatcatatttgtcgtttctttaaa |
16964252 |
T |
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| Q |
116 |
tgcacattaatttgaatgcatttatatagtgtaccttagcctttttgagactcactcaccattcttaatttctctctctcattcagaaaatatgaagaat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16964251 |
tgcacattaatttgaatgcatttatatagtgtaccttagcctttttgaaactcactcaccattcttaatttctctctctcattcagaaaatatgaagaat |
16964152 |
T |
|
| Q |
216 |
ttcttggtttctttatactttttgtttcctacaatctttacaattattcttgtgctacttactccaattccaagtgcacaattaacaaatagtgaaacta |
315 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16964151 |
ttctttgtttctttatactttttgtttcctacaatctttacaattattcttgtgctacttactccaattccaagtgcacaattaacaaatagtgaaacta |
16964052 |
T |
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| Q |
316 |
gaattcttcttcaacttcaaacacgacttgaatatcctcaagaa |
359 |
Q |
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| T |
16964051 |
gaattcttcttcaacttcaaacacttcttgaatatcctcaagaa |
16964008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 16217113 - 16216752
Alignment:
| Q |
18 |
ttgttccctaacaacggtccaaagtatacagttatagatcagtcctttaaaatctgttgcttatggacccaaaaaatcatatttgtcgtttctttaaatg |
117 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||| |||||||| |||||| |
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| T |
16217113 |
ttgttccctaacaacggtccaaa-tatacagttatagatcagcccttataaatctgttgcttatggacccaaaaaatcaaatttctcgtttctataaatg |
16217015 |
T |
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| Q |
118 |
cacattaatttgaatgcatttat---------------------atagtgtaccttagcctttttgagactcactcaccattcttaatttctctctctca |
196 |
Q |
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|| |||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
16217014 |
catattaatttgaatgcatttatttttcttcaactgtgcaatatatagtgtaccttggcctttttgtgactcactcaccattcttaatttctctctctca |
16216915 |
T |
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| Q |
197 |
ttcagaaaatatgaagaatttcttggtttctttatactttttgtttcctacaatctttacaattattcttgtgctacttactccaattccaagtgcacaa |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16216914 |
ttcagaaaatatgaagaatttcttggtttctttatactttttgtttcctacaatctttacaattattcttgtgctacttactccaattccaagtgcacaa |
16216815 |
T |
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| Q |
297 |
ttaacaaatagtgaaactagaattcttcttcaacttcaaacacgacttgaatatcctcaagaa |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
16216814 |
ttaacaaatagtgaaactagaattcttcttcaacttcaaacacttcttgaatatcctcaagaa |
16216752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 382
Target Start/End: Original strand, 16216765 - 16216794
Alignment:
| Q |
353 |
tcaagaagtgtttgaagttgaagaagaatt |
382 |
Q |
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| T |
16216765 |
tcaagaagtgtttgaagttgaagaagaatt |
16216794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 382
Target Start/End: Original strand, 16964021 - 16964050
Alignment:
| Q |
353 |
tcaagaagtgtttgaagttgaagaagaatt |
382 |
Q |
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| T |
16964021 |
tcaagaagtgtttgaagttgaagaagaatt |
16964050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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