View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16642_high_1 (Length: 955)
Name: NF16642_high_1
Description: NF16642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16642_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 153 - 656
Target Start/End: Original strand, 35899096 - 35899596
Alignment:
| Q |
153 |
agagaaatcctgacacaataaatttgaagggtcctcctgctttgaatgtcttggcagcacagtgacaagagcaggtgcatggatgtttttcttcactctt |
252 |
Q |
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| T |
35899096 |
agagaaatcctgacacaataaatttgaagggtcctcctgctttgaatgtcttggcagcacagtgacaagagcaggtgcatggatgtttttcttcactctt |
35899195 |
T |
|
| Q |
253 |
aggttccttcttctgaatctgagccatcatatatattcaaaaggaaaactgcaagctgctgcaaaaagtagggatacactaaatgcacctgaaaaagaaa |
352 |
Q |
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| T |
35899196 |
aggttccttcttctgaatctgagccatc--atatattcaaaaggaaaactgcaagctgctgcaaaaagtagagatacactaaatgcacctgaaaaagaaa |
35899293 |
T |
|
| Q |
353 |
ttcaattaagtg-----ctgaattctataagcttatcaaatatctagaatcacaacttggaatacaaataaactgaaacaagaagcacaggacaaagttc |
447 |
Q |
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| T |
35899294 |
ttcaattaagtgttgatatgaattctataagcttatcaaatatctagaatcacaacttggaatacaaataaattgaaacaaaaagcacaggacaaagttc |
35899393 |
T |
|
| Q |
448 |
aagagacggattgaaagagcgagcactaataggaacacaagcacacaataaaaggtgaataccaacagcatccttaaagaagtcaacacttgggcgataa |
547 |
Q |
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| T |
35899394 |
aagagacagattgaaa----gagcactaataggaacacaagcacacaataaaaggtgaataccaacagcatccttaaagaagtcaacacttgggcgataa |
35899489 |
T |
|
| Q |
548 |
gatgctgtcagtgtcattaccatgcagcttgatatgttaacgacagtatgttgccaaagtggtagttccgctccaacatcaggcacaatcacattaattg |
647 |
Q |
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| T |
35899490 |
gatgctgtca--gtcattaccatccagcttgctatgttaacgacagtatgttgccaaagtggtagatccactccaacatcaggcacaatcacattaattg |
35899587 |
T |
|
| Q |
648 |
tccagtttc |
656 |
Q |
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||||||||| |
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| T |
35899588 |
tccagtttc |
35899596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 1e-90
Query Start/End: Original strand, 705 - 940
Target Start/End: Original strand, 35899626 - 35899845
Alignment:
| Q |
705 |
ttgcagcataaggtaattgaagtgaatccagatccaatagtaattaatgaataatgtcattttgaccactcacatatcaaagttgcaagtagagcagcga |
804 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35899626 |
ttgcagcataaggtaattgaagtgaatccatatccaatagtaattaatgaataatgtcattttgaccactcacat--caaagttgcaagtagagcagcga |
35899723 |
T |
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| Q |
805 |
aaaatgcatagagcctgagtgacatagctagtagaccctgcaatgcatgaagtgattcactttagattcattgactcatagttcattaagtaagtagaaa |
904 |
Q |
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| T |
35899724 |
gaaatgcata--------------tagctagtagaccctgcaatgcatgaagtgattcactttagattcattgactcatagttcattaagtaagtagaaa |
35899809 |
T |
|
| Q |
905 |
tgcaattgaaattatgaaaaaacataacgaagatag |
940 |
Q |
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| T |
35899810 |
tgcaattgaaattatgaaaaaacataacgaagatag |
35899845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 35898955 - 35899004
Alignment:
| Q |
9 |
acatcatcaacaattacaattcttcgatttcagaaggtggttgaacatcc |
58 |
Q |
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| T |
35898955 |
acatcatcaacaattacaattcatcgatttcagaaggtggttgaacatcc |
35899004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 874 - 922
Target Start/End: Original strand, 35854937 - 35854984
Alignment:
| Q |
874 |
attgactcatagttcattaagtaagtagaaatgcaattgaaattatgaa |
922 |
Q |
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| T |
35854937 |
attgactcatagt-cattaagtaagtgaaaatgcaattgaaattatgaa |
35854984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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