View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16642_high_13 (Length: 312)

Name: NF16642_high_13
Description: NF16642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16642_high_13
NF16642_high_13
[»] chr7 (3 HSPs)
chr7 (133-183)||(27039603-27039653)
chr7 (39-96)||(11246703-11246760)
chr7 (41-97)||(12499209-12499265)
[»] chr2 (3 HSPs)
chr2 (28-85)||(37287037-37287094)
chr2 (40-154)||(42970678-42970792)
chr2 (27-97)||(15162372-15162442)
[»] chr1 (6 HSPs)
chr1 (28-155)||(14106696-14106823)
chr1 (25-70)||(3191767-3191812)
chr1 (25-70)||(3200585-3200630)
chr1 (25-70)||(3209422-3209467)
chr1 (38-110)||(19494791-19494863)
chr1 (40-70)||(30490056-30490086)
[»] chr5 (2 HSPs)
chr5 (27-97)||(14646072-14646142)
chr5 (40-97)||(5657267-5657324)
[»] chr4 (2 HSPs)
chr4 (38-155)||(22830254-22830371)
chr4 (38-110)||(11035096-11035168)
[»] chr3 (6 HSPs)
chr3 (40-110)||(9162564-9162634)
chr3 (27-85)||(10084880-10084938)
chr3 (27-85)||(10191800-10191858)
chr3 (40-70)||(28956518-28956548)
chr3 (38-155)||(8340404-8340520)
chr3 (25-70)||(26787214-26787259)
[»] chr8 (3 HSPs)
chr8 (40-69)||(15542613-15542642)
chr8 (31-111)||(37226353-37226432)
chr8 (75-155)||(43511608-43511687)


Alignment Details
Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 27039653 - 27039603
Alignment:
Q  133 ggacctgagtccaattgtcatccatatcaagcaataagctctatattatac 183  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27039653 ggacctgagtccaattgtcatccatatcaagcaataagctctaaattatac 27039603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 11246703 - 11246760
Alignment:
Q  39 ttaaatttgcgggtaattacccggacccaagcttagacccatgaaagtcggattttac 96  Q
    ||||||||||||||||| |||| |||||||||| | |||||||||||| || ||||||    
T  11246703 ttaaatttgcgggtaatcacccagacccaagctcatacccatgaaagtggggttttac 11246760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 12499265 - 12499209
Alignment:
Q  41 aaatttgcgggtaattacccggacccaagcttagacccatgaaagtcggattttacc 97  Q
    ||||||||||||||||||||  ||||||||  |||||||||||||  ||||||||||    
T  12499265 aaatttgcgggtaattacccatacccaagcccagacccatgaaagcgggattttacc 12499209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 37287037 - 37287094
Alignment:
Q  28 cccatatctatttaaatttgcgggtaattacccggacccaagcttagacccatgaaag 85  Q
    ||||||| ||||||||||||||||||||||||| ||||||||| ||||| ||||||||    
T  37287037 cccatatttatttaaatttgcgggtaattacccagacccaagcctagactcatgaaag 37287094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 154
Target Start/End: Original strand, 42970678 - 42970792
Alignment:
Q  40 taaatttgcgggtaattacccggacccaagcttagacccatgaaagtcggattttaccttatcctttgcggggtattttttccga-tacccattggacct 138  Q
    |||||||||||||||||||||  |||||||| | ||||||||||||  || ||||||| || || | || ||||||||||| ||| | ||||| ||| ||    
T  42970678 taaatttgcgggtaattacccatacccaagcctggacccatgaaagcagggttttaccctacccatagc-gggtattttttgcgagtgcccataggatct 42970776  T
Q  139 gagtccaattgtcatc 154  Q
    | ||||||||||||||    
T  42970777 gggtccaattgtcatc 42970792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 15162372 - 15162442
Alignment:
Q  27 gcccatatctatttaaatttgcgggtaattacccggacccaagcttagacccatgaaagtcggattttacc 97  Q
    ||||||| | || |||||||||||||||||||||  ||||||||   || |||||||||| ||||||||||    
T  15162372 gcccatacccatataaatttgcgggtaattacccatacccaagcccggatccatgaaagtgggattttacc 15162442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 155
Target Start/End: Original strand, 14106696 - 14106823
Alignment:
Q  28 cccatatctatttaaatttgcgggtaattacccggacccaagcttagacccatgaaagtcggattttaccttatcctttgcggggtattttttccgatac 127  Q
    |||||| | ||| ||||||||||||||||||||||||||||||  | || ||||||||  || ||||||| || || ||||||||| ||||| | | |      
T  14106696 cccatacccattaaaatttgcgggtaattacccggacccaagcccatactcatgaaagcggggttttaccctacccattgcggggtttttttgcgggtgt 14106795  T
Q  128 ccattggacctgagtccaattgtcatcc 155  Q
    |||| ||||||| ||||||||| |||||    
T  14106796 ccataggacctgggtccaattgccatcc 14106823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 3191812 - 3191767
Alignment:
Q  25 gcgcccatatctatttaaatttgcgggtaattacccggacccaagc 70  Q
    ||||||||||| ||| ||||||||||||||||| ||||||||||||    
T  3191812 gcgcccatatccattaaaatttgcgggtaattatccggacccaagc 3191767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 3200630 - 3200585
Alignment:
Q  25 gcgcccatatctatttaaatttgcgggtaattacccggacccaagc 70  Q
    ||||||||||| ||| ||||||||||||||||| ||||||||||||    
T  3200630 gcgcccatatccattaaaatttgcgggtaattatccggacccaagc 3200585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 3209467 - 3209422
Alignment:
Q  25 gcgcccatatctatttaaatttgcgggtaattacccggacccaagc 70  Q
    ||||||||||| ||| ||||||||||||||||| ||||||||||||    
T  3209467 gcgcccatatccattaaaatttgcgggtaattatccggacccaagc 3209422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 19494791 - 19494863
Alignment:
Q  38 tttaaatttgcgggtaattacccggacccaagcttagacccatgaaagtcggattttaccttatcctttgcgg 110  Q
    ||||| |||||||||||||||||||||||| |   |||||||||||||  |||||||||| || || ||||||    
T  19494791 tttaagtttgcgggtaattacccggacccatgtccagacccatgaaagcgggattttaccctacccattgcgg 19494863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 70
Target Start/End: Original strand, 30490056 - 30490086
Alignment:
Q  40 taaatttgcgggtaattacccggacccaagc 70  Q
    |||||||||||||||||||||||||||||||    
T  30490056 taaatttgcgggtaattacccggacccaagc 30490086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 14646072 - 14646142
Alignment:
Q  27 gcccatatctatttaaatttgcgggtaattacccggacccaagcttagacccatgaaagtcggattttacc 97  Q
    ||||||||| || |||||||||||||||||||||  ||||||||   ||||||||||| | ||||||||||    
T  14646072 gcccatatccatataaatttgcgggtaattacccatacccaagcccggacccatgaaaatgggattttacc 14646142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 5657324 - 5657267
Alignment:
Q  40 taaatttgcgggtaattacccggacccaagcttagacccatgaaagtcggattttacc 97  Q
    ||||||||||||||||||| |||| ||||||  | |||||| ||||| ||||||||||    
T  5657324 taaatttgcgggtaattacacggatccaagcccatacccataaaagtgggattttacc 5657267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 155
Target Start/End: Original strand, 22830254 - 22830371
Alignment:
Q  38 tttaaatttgcgggtaattacccggacccaagcttagacccatgaaagtcggattttaccttatcctttgcggggtattttttccgatacccattggacc 137  Q
    ||||| |||||||||||||||||||||||| ||  | |||||||| ||  ||  |||||| || || |||||||  |||||| | ||||||||| |||||    
T  22830254 tttaagtttgcgggtaattacccggacccatgcccatacccatgatagcggggatttaccctacccattgcgggtaatttttacggatacccatcggacc 22830353  T
Q  138 tgagtccaattgtcatcc 155  Q
    || ||| ||||| |||||    
T  22830354 tgggtctaattgccatcc 22830371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 11035096 - 11035168
Alignment:
Q  38 tttaaatttgcgggtaattacccggacccaagcttagacccatgaaagtcggattttaccttatcctttgcgg 110  Q
    ||||| |||||||||||||||||||||||| || || | |||||||||  || ||||||| || || ||||||    
T  11035096 tttaagtttgcgggtaattacccggacccatgcctatatccatgaaagcggggttttaccctacccattgcgg 11035168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 9162634 - 9162564
Alignment:
Q  40 taaatttgcgggtaattacccggacccaagcttagacccatgaaagtcggattttaccttatcctttgcgg 110  Q
    ||||||||||||||||||| |||||||||||  | | |||| ||||   ||||||||||||||| ||||||    
T  9162634 taaatttgcgggtaattactcggacccaagccaatatccataaaagcaagattttaccttatccattgcgg 9162564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 10084938 - 10084880
Alignment:
Q  27 gcccatatctatttaaatttgcgggtaattacccggacccaagcttagacccatgaaag 85  Q
    ||||||| | || |||||||||||||||||||||  |||||||||  ||||||||||||    
T  10084938 gcccatacccatataaatttgcgggtaattacccatacccaagctcggacccatgaaag 10084880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 10191858 - 10191800
Alignment:
Q  27 gcccatatctatttaaatttgcgggtaattacccggacccaagcttagacccatgaaag 85  Q
    ||||||| | || |||||||||||||||||||||  |||||||||  ||||||||||||    
T  10191858 gcccatacccatataaatttgcgggtaattacccatacccaagctcggacccatgaaag 10191800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 70
Target Start/End: Complemental strand, 28956548 - 28956518
Alignment:
Q  40 taaatttgcgggtaattacccggacccaagc 70  Q
    |||||||||||||||||||||||||||||||    
T  28956548 taaatttgcgggtaattacccggacccaagc 28956518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 155
Target Start/End: Original strand, 8340404 - 8340520
Alignment:
Q  38 tttaaatttgcgggtaattacccggacccaagcttagacccatgaaagtcggattttaccttatcctttgcggggtattttttccgatacccattggacc 137  Q
    ||||| ||| |||||||||||| ||||||| || || ||||| ||||| ||| ||||||| || || ||||||| | ||| ||| | ||||||| || ||    
T  8340404 tttaagtttacgggtaattacctggacccatgcctatacccacgaaag-cgggttttaccctacccgttgcgggttttttattcgggtacccatcgggcc 8340502  T
Q  138 tgagtccaattgtcatcc 155  Q
    || ||||||||| |||||    
T  8340503 tgggtccaattgccatcc 8340520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 26787259 - 26787214
Alignment:
Q  25 gcgcccatatctatttaaatttgcgggtaattacccggacccaagc 70  Q
    ||||||||| | || |||||||||||||||||| ||||||||||||    
T  26787259 gcgcccatacccatctaaatttgcgggtaattatccggacccaagc 26787214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 69
Target Start/End: Original strand, 15542613 - 15542642
Alignment:
Q  40 taaatttgcgggtaattacccggacccaag 69  Q
    ||||||||||||||||||||||||||||||    
T  15542613 taaatttgcgggtaattacccggacccaag 15542642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 37226432 - 37226353
Alignment:
Q  31 atatctatttaaatttgcgggtaattacccggacccaagcttagacccatgaaagtcggattttaccttatcctttgcggg 111  Q
    ||||| || ||||||||||| ||||||||| ||||||| || | |||||||||||  || ||||||| ||||| |||||||    
T  37226432 atatccatctaaatttgcgg-taattacccagacccaaactcatacccatgaaagcggggttttaccctatccattgcggg 37226353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 155
Target Start/End: Original strand, 43511608 - 43511687
Alignment:
Q  75 acccatgaaagtcggattttaccttatcctttgcggggtattttttccgatacccattggacctgagtccaattgtcatcc 155  Q
    |||||||||||  |||||||||| ||||  |||| || ||||||||| |||| |||| | ||||||||||||||| |||||    
T  43511608 acccatgaaagcgggattttaccctatctattgcagg-tattttttcggatatccatcgaacctgagtccaattgccatcc 43511687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University