View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16642_high_14 (Length: 303)
Name: NF16642_high_14
Description: NF16642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16642_high_14 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 20 - 303
Target Start/End: Original strand, 33608952 - 33609235
Alignment:
| Q |
20 |
atggggatggagactttcgcttggacttgcagtggttcctgcaatagtgatgacgattggttccttcctcataacggacacaccgaacagcttagttgaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
33608952 |
atggggatggagactttcgcttggacttgcagtggttcctgcaatagtgatgacaattggttccttcctcatatcggacacacccaacagcttagttgaa |
33609051 |
T |
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| Q |
120 |
cgtggtaaactcgagcaagctaaaaaagccttacgcaaaattagaggatcctcagttgatattgaacctgagttagaagaacttattaagtcaatagaac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33609052 |
cgtggtaaactcgagcaagctaaaaaagccttacgcaaaattagaggatcctcagttgatattgaacctgagttagaagaacttattaagtcaatagaac |
33609151 |
T |
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| Q |
220 |
ttgcaaaatcggttaaccaagaggcctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggcatttgcaatcc |
303 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33609152 |
ttgcaaaatcggttaaccaagagccctttaaaaccatattaaaaagggagtatcgacctcacttggtgatggcatttgcaatcc |
33609235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 20 - 303
Target Start/End: Original strand, 33618127 - 33618410
Alignment:
| Q |
20 |
atggggatggagactttcgcttggacttgcagtggttcctgcaatagtgatgacgattggttccttcctcataacggacacaccgaacagcttagttgaa |
119 |
Q |
| |
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||||||||||||||| || |||||||||||||||||||||||| |||||||| || |||||||||||||| || || ||||| ||| |||| || ||| |
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| T |
33618127 |
atggggatggagactctctcttggacttgcagtggttcctgcagctgtgatgacaatcggttccttcctcattaccgatacaccaaacggcttggtagaa |
33618226 |
T |
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| Q |
120 |
cgtggtaaactcgagcaagctaaaaaagccttacgcaaaattagaggatcctcagttgatattgaacctgagttagaagaacttattaagtcaatagaac |
219 |
Q |
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|||||||| | |||||||| ||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| | |||| |
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| T |
33618227 |
cgtggtaagatagagcaagccaaacaagccttacgcaaaattagaggatcctcggttgatattgaacccgagttagaagaacttatcaagtggacagaaa |
33618326 |
T |
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| Q |
220 |
ttgcaaaatcggttaaccaagaggcctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggcatttgcaatcc |
303 |
Q |
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|||| ||||| || | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33618327 |
ttgcgaaatcagtgcaacaagagccctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggcatttgcaatcc |
33618410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 292
Target Start/End: Original strand, 33627342 - 33627614
Alignment:
| Q |
20 |
atggggatggagactttcgcttggacttgcagtggttcctgcaatagtgatgacgattggttccttcctcataacggacacaccgaacagcttagttgaa |
119 |
Q |
| |
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||||||||||||||| || |||||||||||||| || |||||| || || || |||||| ||||||||||||| |||||||| ||||||||||| ||| |
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| T |
33627342 |
atggggatggagactctctcttggacttgcagttgtgcctgcagctgtaattacaattggtgccttcctcataactgacacacccaacagcttagtcgaa |
33627441 |
T |
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| Q |
120 |
cgtggtaaactcgagcaagctaaaaaagccttacgcaaaattagaggatcctcagttgatattgaacctgagttagaagaacttattaagtcaatagaac |
219 |
Q |
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|||||||| | |||||||| |||||||| |||| |||||| |||||||| || ||||||||||||||||||||||||||||||||| ||||| | || |
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| T |
33627442 |
cgtggtaagatagagcaagccaaaaaagcattacacaaaatcagaggatcttccattgatattgaacctgagttagaagaacttattaggtcaacaaaaa |
33627541 |
T |
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| Q |
220 |
ttgcaaaatcggttaaccaagaggcctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggc |
292 |
Q |
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|||||||||| | | |||||| |||||||||||||||| |||||||| ||||||||||||||||| ||||| |
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| T |
33627542 |
ttgcaaaatcactgcaacaagagccctttaaaaccatattcaaaagggagtatcgacctcacttggtaatggc |
33627614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 137 - 280
Target Start/End: Original strand, 33622433 - 33622576
Alignment:
| Q |
137 |
agctaaaaaagccttacgcaaaattagaggatcctcagttgatattgaacctgagttagaagaacttattaagtcaatagaacttgcaaaatcggttaac |
236 |
Q |
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|||| ||||||||||||||| ||| | ||||||||| ||||||||||||||||||| ||||||| ||||||||||| | || ||| |||||| || || |
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| T |
33622433 |
agctgaaaaagccttacgcataatcaaaggatcctccattgatattgaacctgagtttgaagaacatattaagtcaacacaaattgtaaaatcagtaaaa |
33622532 |
T |
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| Q |
237 |
caagaggcctttaaaaccatattaaaaagggaatatcgacctca |
280 |
Q |
| |
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|||| |||||||||||||| ||||||| || |||| |||||| |
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| T |
33622533 |
aaagatccctttaaaaccatactaaaaagagagtatcaacctca |
33622576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 303
Target Start/End: Original strand, 33588236 - 33588519
Alignment:
| Q |
20 |
atggggatggagactttcgcttggacttgcagtggttcctgcaatagtgatgacgattggttccttcctcataacggacacaccgaacagcttagttgaa |
119 |
Q |
| |
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|||||| ||| |||| || |||||||| |||||||| |||| | |||||||| |||||| ||||||||||| | |||||||| | |||||| |||||| |
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| T |
33588236 |
atggggctggcgactctctcttggactagcagtggtgcctgaagccgtgatgacaattggtgccttcctcatatccgacacacccagcagcttggttgaa |
33588335 |
T |
|
| Q |
120 |
cgtggtaaactcgagcaagctaaaaaagccttacgcaaaattagaggatcctcagttgatattgaacctgagttagaagaacttattaagtcaatagaac |
219 |
Q |
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||||| || | || ||||| | ||||| || | ||||| |||||||| || ||||| |||| || |||||||||||||| |||||| | |||| |
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| T |
33588336 |
cgtggcaagatagaccaagccaggaaagcattgcaaaaaatcagaggatcatccattgatgttgagcccgagttagaagaactctttaagtggacagaaa |
33588435 |
T |
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| Q |
220 |
ttgcaaaatcggttaaccaagaggcctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggcatttgcaatcc |
303 |
Q |
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|| | ||| | || | |||||| | |||| ||||||||| | || ||||||||||||||||||| ||||||||| |||||| |
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| T |
33588436 |
tttcgaaagcagtgcaacaagagccatttatgaccatattagagagacaatatcgacctcacttggtcatggcattttcaatcc |
33588519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 303
Target Start/End: Original strand, 33595408 - 33595691
Alignment:
| Q |
20 |
atggggatggagactttcgcttggacttgcagtggttcctgcaatagtgatgacgattggttccttcctcataacggacacaccgaacagcttagttgaa |
119 |
Q |
| |
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|||||| ||| |||| || |||||||| |||||||| |||| | |||||||| |||||| ||||||||||| | |||||||| | |||||| |||||| |
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| T |
33595408 |
atggggctggcgactctctcttggactagcagtggtgcctggagccgtgatgacaattggtgccttcctcatatccgacacacccagcagcttggttgaa |
33595507 |
T |
|
| Q |
120 |
cgtggtaaactcgagcaagctaaaaaagccttacgcaaaattagaggatcctcagttgatattgaacctgagttagaagaacttattaagtcaatagaac |
219 |
Q |
| |
|
||||| || | || ||||| | ||||| || | ||||| |||||||| || ||||| |||| || |||||||||||||| |||||| | |||| |
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| T |
33595508 |
cgtggcaagatagaccaagccaggaaagcattgcaaaaaatcagaggatcatccattgatgttgagcccgagttagaagaactctttaagtggacagaaa |
33595607 |
T |
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| Q |
220 |
ttgcaaaatcggttaaccaagaggcctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggcatttgcaatcc |
303 |
Q |
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|| | ||| | || | |||||| | |||| |||||||| | || ||||||||||||||||||| ||||||||| |||||| |
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| T |
33595608 |
tttcgaaagcagtgcaacaagagccatttatgaccatatttgagagacaatatcgacctcacttggtcatggcattttcaatcc |
33595691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 303
Target Start/End: Original strand, 33602539 - 33602822
Alignment:
| Q |
20 |
atggggatggagactttcgcttggacttgcagtggttcctgcaatagtgatgacgattggttccttcctcataacggacacaccgaacagcttagttgaa |
119 |
Q |
| |
|
|||||| ||| |||| || |||||||| |||||||| |||| | |||||||| |||||| ||||||||||| | |||||||| | |||||| |||||| |
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| T |
33602539 |
atggggctggcgactctctcttggactagcagtggtgcctggagccgtgatgacaattggtgccttcctcatatccgacacacccagcagcttggttgaa |
33602638 |
T |
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| Q |
120 |
cgtggtaaactcgagcaagctaaaaaagccttacgcaaaattagaggatcctcagttgatattgaacctgagttagaagaacttattaagtcaatagaac |
219 |
Q |
| |
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||||| || | || ||||| | ||||| || | ||||| |||||||| || ||||| |||| || |||||||||||||| |||||| | |||| |
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| T |
33602639 |
cgtggcaagatagaccaagccaggaaagcattgcaaaaaatcagaggatcatccattgatgttgagcccgagttagaagaactctttaagtggacagaaa |
33602738 |
T |
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| Q |
220 |
ttgcaaaatcggttaaccaagaggcctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggcatttgcaatcc |
303 |
Q |
| |
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|| | ||| | || | |||||| | |||| |||||||| | || ||||||||||||||||||| ||||||||| |||||| |
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| T |
33602739 |
tttcgaaagcagtgcaacaagagccatttatgaccatatttgagagacaatatcgacctcacttggtcatggcattttcaatcc |
33602822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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