View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16642_high_16 (Length: 293)

Name: NF16642_high_16
Description: NF16642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16642_high_16
NF16642_high_16
[»] chr6 (5 HSPs)
chr6 (4-40)||(679862-679898)
chr6 (6-40)||(17734192-17734226)
chr6 (6-35)||(681126-681155)
chr6 (6-35)||(30337450-30337479)
chr6 (6-35)||(30337816-30337845)
[»] chr4 (22 HSPs)
chr4 (4-40)||(15507669-15507705)
chr4 (6-40)||(24711107-24711141)
chr4 (6-40)||(48528481-48528515)
chr4 (6-35)||(5368948-5368977)
chr4 (6-35)||(7451835-7451864)
chr4 (6-35)||(7452201-7452230)
chr4 (6-35)||(10780714-10780743)
chr4 (6-35)||(10781882-10781911)
chr4 (6-35)||(10974323-10974352)
chr4 (6-35)||(13058038-13058067)
chr4 (6-35)||(23613310-23613339)
chr4 (6-35)||(23613676-23613705)
chr4 (6-35)||(24349675-24349704)
chr4 (6-35)||(24350830-24350859)
chr4 (6-35)||(24711478-24711507)
chr4 (4-33)||(43155532-43155561)
chr4 (6-35)||(44967436-44967465)
chr4 (6-35)||(49879208-49879237)
chr4 (6-35)||(50418669-50418698)
chr4 (6-35)||(50419035-50419064)
chr4 (8-40)||(13058382-13058414)
chr4 (6-34)||(44967071-44967099)
[»] chr7 (9 HSPs)
chr7 (6-37)||(32299103-32299134)
chr7 (6-36)||(6253471-6253501)
chr7 (6-40)||(17102016-17102050)
chr7 (6-40)||(27991735-27991769)
chr7 (6-40)||(32298773-32298807)
chr7 (6-35)||(6253838-6253867)
chr7 (6-35)||(6571014-6571043)
chr7 (6-35)||(17102387-17102416)
chr7 (6-35)||(22871675-22871704)
[»] scaffold0007 (2 HSPs)
scaffold0007 (6-40)||(2139-2173)
scaffold0007 (6-35)||(1770-1799)
[»] chr5 (8 HSPs)
chr5 (6-40)||(3528869-3528903)
chr5 (6-40)||(11761745-11761779)
chr5 (6-40)||(24547523-24547557)
chr5 (6-35)||(3529240-3529269)
chr5 (6-35)||(11762115-11762144)
chr5 (6-35)||(27587149-27587178)
chr5 (6-35)||(27587513-27587542)
chr5 (6-35)||(28770870-28770899)
[»] chr2 (9 HSPs)
chr2 (6-40)||(45556108-45556142)
chr2 (6-39)||(2318156-2318189)
chr2 (6-35)||(6658245-6658274)
chr2 (6-35)||(11163421-11163450)
chr2 (6-35)||(16099422-16099451)
chr2 (6-35)||(39498677-39498706)
chr2 (7-35)||(6657879-6657907)
chr2 (54-114)||(26835428-26835488)
chr2 (4-40)||(37895343-37895379)
[»] chr8 (10 HSPs)
chr8 (6-35)||(8316986-8317015)
chr8 (6-35)||(12198951-12198980)
chr8 (6-35)||(12443379-12443408)
chr8 (6-35)||(20385569-20385598)
chr8 (6-35)||(20386828-20386857)
chr8 (6-35)||(23663912-23663941)
chr8 (6-35)||(23698309-23698338)
chr8 (6-35)||(38956070-38956099)
chr8 (6-34)||(12272920-12272948)
chr8 (7-35)||(38955704-38955732)
[»] chr3 (5 HSPs)
chr3 (6-35)||(2796180-2796209)
chr3 (6-35)||(19741290-19741319)
chr3 (6-35)||(34142616-34142645)
chr3 (6-35)||(51994284-51994313)
chr3 (6-38)||(41989584-41989616)
[»] chr1 (3 HSPs)
chr1 (6-35)||(25647885-25647914)
chr1 (6-35)||(26024790-26024819)
chr1 (6-35)||(47999124-47999153)


Alignment Details
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 679898 - 679862
Alignment:
Q  4 cttaattgcaaggatcaaatacatatttaagcatttt 40  Q
    |||||||||||||||||||||||||||||||| ||||    
T  679898 cttaattgcaaggatcaaatacatatttaagcctttt 679862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 17734226 - 17734192
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagcatttt 40  Q
    |||||||||||||||||||||||||||||| ||||    
T  17734226 taattgcaaggatcaaatacatatttaagcctttt 17734192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 681126 - 681155
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  681126 taattgcaaggatcaaatacatatttaagc 681155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 30337479 - 30337450
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  30337479 taattgcaaggatcaaatacatatttaagc 30337450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 30337816 - 30337845
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  30337816 taattgcaaggatcaaatacatatttaagc 30337845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 15507705 - 15507669
Alignment:
Q  4 cttaattgcaaggatcaaatacatatttaagcatttt 40  Q
    ||||||||||||||| |||||||||||||||||||||    
T  15507705 cttaattgcaaggatgaaatacatatttaagcatttt 15507669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 24711141 - 24711107
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagcatttt 40  Q
    |||||||||||||||||||||||||||||| ||||    
T  24711141 taattgcaaggatcaaatacatatttaagcctttt 24711107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 48528515 - 48528481
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagcatttt 40  Q
    |||||||||||||||||||||||||||||| ||||    
T  48528515 taattgcaaggatcaaatacatatttaagcctttt 48528481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 5368977 - 5368948
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  5368977 taattgcaaggatcaaatacatatttaagc 5368948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 7451864 - 7451835
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  7451864 taattgcaaggatcaaatacatatttaagc 7451835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 7452201 - 7452230
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  7452201 taattgcaaggatcaaatacatatttaagc 7452230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 10780743 - 10780714
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  10780743 taattgcaaggatcaaatacatatttaagc 10780714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 10781882 - 10781911
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  10781882 taattgcaaggatcaaatacatatttaagc 10781911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 10974352 - 10974323
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  10974352 taattgcaaggatcaaatacatatttaagc 10974323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 13058067 - 13058038
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  13058067 taattgcaaggatcaaatacatatttaagc 13058038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 23613339 - 23613310
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  23613339 taattgcaaggatcaaatacatatttaagc 23613310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 23613676 - 23613705
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  23613676 taattgcaaggatcaaatacatatttaagc 23613705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 24349704 - 24349675
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  24349704 taattgcaaggatcaaatacatatttaagc 24349675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 24350830 - 24350859
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  24350830 taattgcaaggatcaaatacatatttaagc 24350859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 24711478 - 24711507
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  24711478 taattgcaaggatcaaatacatatttaagc 24711507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 33
Target Start/End: Complemental strand, 43155561 - 43155532
Alignment:
Q  4 cttaattgcaaggatcaaatacatatttaa 33  Q
    ||||||||||||||||||||||||||||||    
T  43155561 cttaattgcaaggatcaaatacatatttaa 43155532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 44967436 - 44967465
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  44967436 taattgcaaggatcaaatacatatttaagc 44967465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 49879237 - 49879208
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  49879237 taattgcaaggatcaaatacatatttaagc 49879208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 50418698 - 50418669
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  50418698 taattgcaaggatcaaatacatatttaagc 50418669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 50419035 - 50419064
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  50419035 taattgcaaggatcaaatacatatttaagc 50419064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 13058382 - 13058414
Alignment:
Q  8 attgcaaggatcaaatacatatttaagcatttt 40  Q
    |||||||||||||||||||||||||||| ||||    
T  13058382 attgcaaggatcaaatacatatttaagcctttt 13058414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 34
Target Start/End: Complemental strand, 44967099 - 44967071
Alignment:
Q  6 taattgcaaggatcaaatacatatttaag 34  Q
    |||||||||||||||||||||||||||||    
T  44967099 taattgcaaggatcaaatacatatttaag 44967071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 37
Target Start/End: Original strand, 32299103 - 32299134
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagcat 37  Q
    ||||||||||||||||||||||||||||||||    
T  32299103 taattgcaaggatcaaatacatatttaagcat 32299134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 36
Target Start/End: Complemental strand, 6253501 - 6253471
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagca 36  Q
    |||||||||||||||||||||||||||||||    
T  6253501 taattgcaaggatcaaatacatatttaagca 6253471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 17102050 - 17102016
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagcatttt 40  Q
    |||||||||||||||||||||||||||||| ||||    
T  17102050 taattgcaaggatcaaatacatatttaagcctttt 17102016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 27991769 - 27991735
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagcatttt 40  Q
    |||||||||||||||||||||||||||||| ||||    
T  27991769 taattgcaaggatcaaatacatatttaagcctttt 27991735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 32298807 - 32298773
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagcatttt 40  Q
    |||||||||||||||||||||||||||||| ||||    
T  32298807 taattgcaaggatcaaatacatatttaagcctttt 32298773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 6253838 - 6253867
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  6253838 taattgcaaggatcaaatacatatttaagc 6253867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 6571043 - 6571014
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  6571043 taattgcaaggatcaaatacatatttaagc 6571014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 17102387 - 17102416
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  17102387 taattgcaaggatcaaatacatatttaagc 17102416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 22871675 - 22871704
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  22871675 taattgcaaggatcaaatacatatttaagc 22871704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 2139 - 2173
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagcatttt 40  Q
    |||||||||||||||||||||||||||||| ||||    
T  2139 taattgcaaggatcaaatacatatttaagcctttt 2173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 1799 - 1770
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  1799 taattgcaaggatcaaatacatatttaagc 1770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 3528903 - 3528869
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagcatttt 40  Q
    |||||||||||||||||||||||||||||| ||||    
T  3528903 taattgcaaggatcaaatacatatttaagcctttt 3528869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 11761779 - 11761745
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagcatttt 40  Q
    |||||||||||||||||||||||||||||| ||||    
T  11761779 taattgcaaggatcaaatacatatttaagcctttt 11761745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 24547523 - 24547557
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagcatttt 40  Q
    |||||||||||||||||||||||||||||| ||||    
T  24547523 taattgcaaggatcaaatacatatttaagcctttt 24547557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 3529240 - 3529269
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  3529240 taattgcaaggatcaaatacatatttaagc 3529269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 11762115 - 11762144
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  11762115 taattgcaaggatcaaatacatatttaagc 11762144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 27587178 - 27587149
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  27587178 taattgcaaggatcaaatacatatttaagc 27587149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 27587513 - 27587542
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  27587513 taattgcaaggatcaaatacatatttaagc 27587542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 28770899 - 28770870
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  28770899 taattgcaaggatcaaatacatatttaagc 28770870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 45556142 - 45556108
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagcatttt 40  Q
    |||||||||||||||||||||||||||||| ||||    
T  45556142 taattgcaaggatcaaatacatatttaagcctttt 45556108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 2318189 - 2318156
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagcattt 39  Q
    ||||||||||||| ||||||||||||||||||||    
T  2318189 taattgcaaggatgaaatacatatttaagcattt 2318156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 6658245 - 6658274
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  6658245 taattgcaaggatcaaatacatatttaagc 6658274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 11163421 - 11163450
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  11163421 taattgcaaggatcaaatacatatttaagc 11163450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 16099422 - 16099451
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  16099422 taattgcaaggatcaaatacatatttaagc 16099451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 39498677 - 39498706
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  39498677 taattgcaaggatcaaatacatatttaagc 39498706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 35
Target Start/End: Complemental strand, 6657907 - 6657879
Alignment:
Q  7 aattgcaaggatcaaatacatatttaagc 35  Q
    |||||||||||||||||||||||||||||    
T  6657907 aattgcaaggatcaaatacatatttaagc 6657879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 26835428 - 26835488
Alignment:
Q  54 gtagtgagattaatttattgataacttatgtatcaacacatcttaagtaagcatgtacaat 114  Q
    ||||| |||| ||||||||||||||||||  || |||||||  |||||||||||| |||||    
T  26835428 gtagtaagatcaatttattgataacttattgatgaacacataataagtaagcatgcacaat 26835488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 37895379 - 37895343
Alignment:
Q  4 cttaattgcaaggatcaaatacatatttaagcatttt 40  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  37895379 cttaattgcaaggatgaaatacatatttaagcctttt 37895343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 8316986 - 8317015
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  8316986 taattgcaaggatcaaatacatatttaagc 8317015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 12198980 - 12198951
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  12198980 taattgcaaggatcaaatacatatttaagc 12198951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 12443408 - 12443379
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  12443408 taattgcaaggatcaaatacatatttaagc 12443379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 20385598 - 20385569
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  20385598 taattgcaaggatcaaatacatatttaagc 20385569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 20386828 - 20386857
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  20386828 taattgcaaggatcaaatacatatttaagc 20386857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 23663912 - 23663941
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  23663912 taattgcaaggatcaaatacatatttaagc 23663941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 23698338 - 23698309
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  23698338 taattgcaaggatcaaatacatatttaagc 23698309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 38956070 - 38956099
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  38956070 taattgcaaggatcaaatacatatttaagc 38956099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 34
Target Start/End: Complemental strand, 12272948 - 12272920
Alignment:
Q  6 taattgcaaggatcaaatacatatttaag 34  Q
    |||||||||||||||||||||||||||||    
T  12272948 taattgcaaggatcaaatacatatttaag 12272920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 35
Target Start/End: Complemental strand, 38955732 - 38955704
Alignment:
Q  7 aattgcaaggatcaaatacatatttaagc 35  Q
    |||||||||||||||||||||||||||||    
T  38955732 aattgcaaggatcaaatacatatttaagc 38955704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 2796209 - 2796180
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  2796209 taattgcaaggatcaaatacatatttaagc 2796180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 19741290 - 19741319
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  19741290 taattgcaaggatcaaatacatatttaagc 19741319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 34142616 - 34142645
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  34142616 taattgcaaggatcaaatacatatttaagc 34142645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 51994284 - 51994313
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  51994284 taattgcaaggatcaaatacatatttaagc 51994313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 41989584 - 41989616
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagcatt 38  Q
    ||||||||||||| |||||||||||||||||||    
T  41989584 taattgcaaggatgaaatacatatttaagcatt 41989616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 25647914 - 25647885
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  25647914 taattgcaaggatcaaatacatatttaagc 25647885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 26024790 - 26024819
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  26024790 taattgcaaggatcaaatacatatttaagc 26024819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 47999153 - 47999124
Alignment:
Q  6 taattgcaaggatcaaatacatatttaagc 35  Q
    ||||||||||||||||||||||||||||||    
T  47999153 taattgcaaggatcaaatacatatttaagc 47999124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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