View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16642_high_4 (Length: 449)
Name: NF16642_high_4
Description: NF16642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16642_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 146 - 441
Target Start/End: Complemental strand, 24743693 - 24743399
Alignment:
| Q |
146 |
tgatagactatattcgatgttcatgatttctttatcatgttgttcatctgcattttatttggtaaa-ctgttgaaattttattgtgggtttagatgatat |
244 |
Q |
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| T |
24743693 |
tgatagactagattcgatgttcatgatttctttatcatgttgttcatctgcattttatttggtaaaactgttgaaattttattgtgggtttagatgatat |
24743594 |
T |
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| Q |
245 |
gttctgatagctgccagcaatactaggactgcacttttaaaactacataaattaaagtaggttgaactgtacttgtagtaagctattcccgtgggtttat |
344 |
Q |
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| T |
24743593 |
gttctgatagctgccagcaatactaggactgcacttttaaaactacataaattaaagtaggttgaactgcacttgtagtaagctattcccgtgggtttat |
24743494 |
T |
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| Q |
345 |
atgatatgggtttataaagcaaagcagttgtgcggcgatttttagtgttgatatctcgataatcatcatttcctgattacaacaatttatctctgct |
441 |
Q |
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| T |
24743493 |
atgatatgggtttataaagcaaagcagctgtgcggcgattttt--tgttgatatctcgataatcatcatttcctgattacaacaatttatctctgct |
24743399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 24743792 - 24743681
Alignment:
| Q |
20 |
atccaaaactatgacgattatcgatgctggagaagtta---attcggagaaaatcaatggtgatgctaatgttatcactgtttgaagggctaatgaaggt |
116 |
Q |
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| T |
24743792 |
atccaaaactgtgacgattatcgatgctggagaagttattaattcggagaaaatcaatggtgatgctaatgttatcactgcttgaagggctaatgaaggt |
24743693 |
T |
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| Q |
117 |
gattgactagat |
128 |
Q |
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| T |
24743692 |
gatagactagat |
24743681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 359 - 438
Target Start/End: Complemental strand, 23429216 - 23429137
Alignment:
| Q |
359 |
taaagcaaagcagttgtgcggcgatttttagtgttgatatctcgataatcatcatttcctgattacaacaatttatctct |
438 |
Q |
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| T |
23429216 |
taaagaaaagcagttgtgcggcgattttcggtattgatatctcaataatcatcatttcctattgacaacaatttatctct |
23429137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 190
Target Start/End: Complemental strand, 45911624 - 45911532
Alignment:
| Q |
98 |
ttgaagggctaatgaaggtgattgactagatatttgtcttttgctctttgatagactatattcgatgttcatgatttctttatcatgttgttc |
190 |
Q |
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| T |
45911624 |
ttgaagagctaatgaaggtgacttacttactatttgtcttctgccttttgatagactagattcaatgtggatattttctttatcatgttgttc |
45911532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 190
Target Start/End: Complemental strand, 19675318 - 19675226
Alignment:
| Q |
98 |
ttgaagggctaatgaaggtgattgactagatatttgtcttttgctctttgatagactatattcgatgttcatgatttctttatcatgttgttc |
190 |
Q |
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| T |
19675318 |
ttgaagagctaatgaaggtgacttacttactatttgtcttctgccttttgatagactagattcaatgtggatattttctttatcatgttgttc |
19675226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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