View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16642_high_5 (Length: 444)
Name: NF16642_high_5
Description: NF16642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16642_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 11 - 426
Target Start/End: Complemental strand, 29520256 - 29519841
Alignment:
| Q |
11 |
gatgaagtatttatataagctactgtaaagacacagtgaggtgctaaaactgcgattgtcaca-----ggttcattgagaaacgtaaaatattaagttga |
105 |
Q |
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| T |
29520256 |
gatgaagtatttatataaactactgtaaagacacagtgaggtgctaaaactgcgattgtcacatcacaggttcattgagaaacgtaaaatattaagttga |
29520157 |
T |
|
| Q |
106 |
ttcacgtggtgtccatcccattccattgatctctctacttgcaacaaacaacacggttcgtggtactactagtttagtttagtttagtagtaagtagatt |
205 |
Q |
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| T |
29520156 |
ttcacgtggtgtccatcccattccattgatctctctacttgcaacaaacaacaaggttcgtggtactactagtttagtttagtttagtagtaagtagatt |
29520057 |
T |
|
| Q |
206 |
ggtcgttgaggttattaaacaacatttcaccggtgagaatttaatacacccaatcttatgttatgttatgtcccaaatataaaggtgatggagtacctgc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29520056 |
ggtcgttgaggttattaaacaacatttcaccggtgagaatttaatacacccaatcttatgtt-----atgtcccaaatataaaggtgatggagtacctgc |
29519962 |
T |
|
| Q |
306 |
tatttcccaaactatttattcatgcttttcttccctcttcccaaactaatcctaatttccttcctagcctcatactataccttcctcattaattcttctt |
405 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29519961 |
tatttcccaaactattcattcatgcttttcttccctcttcccaaactaatcctaatttccttcctagcctcatactataccttcctcattaattcttctt |
29519862 |
T |
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| Q |
406 |
tcttcttatctcaatcatatt |
426 |
Q |
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||||||||||||||||||||| |
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| T |
29519861 |
tcttcttatctcaatcatatt |
29519841 |
T |
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